Wall clock time and date at job start Mon Mar 30 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.52993 * 109.47307 * 300.00113 * 3 2 1 5 5 C 1.52998 * 109.47028 * 60.00071 * 3 2 1 6 6 C 1.50702 * 109.47227 * 179.97438 * 3 2 1 7 7 C 1.37978 * 120.07303 * 4.47929 * 6 3 2 8 8 C 1.38340 * 120.14845 * 180.02562 * 7 6 3 9 9 C 1.38385 * 120.28782 * 0.02562 * 8 7 6 10 10 C 1.37933 * 120.14819 * 0.02562 * 9 8 7 11 11 C 1.39552 * 120.07288 * 184.20699 * 6 3 2 12 12 C 1.47847 * 120.14743 * 359.97438 * 11 6 3 13 13 O 1.21551 * 119.99905 * 352.55692 * 12 11 6 14 14 N 1.34777 * 120.00169 * 172.55093 * 12 11 6 15 15 C 1.46494 * 120.00067 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47012 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99793 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47312 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46868 * 119.99954 * 20 18 16 23 23 H 1.48497 * 109.46963 * 239.99874 * 20 18 16 24 24 H 1.08994 * 109.47479 * 299.99614 * 1 2 3 25 25 H 1.09002 * 109.47272 * 59.99689 * 1 2 3 26 26 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47272 * 120.00311 * 2 1 3 28 28 H 1.09003 * 109.47204 * 240.00425 * 2 1 3 29 29 H 1.08998 * 109.47449 * 91.96356 * 4 3 2 30 30 H 1.09001 * 109.47589 * 211.96393 * 4 3 2 31 31 H 1.08998 * 109.47362 * 331.96247 * 4 3 2 32 32 H 1.09006 * 109.47448 * 26.52947 * 5 3 2 33 33 H 1.09002 * 109.47258 * 146.52819 * 5 3 2 34 34 H 1.08999 * 109.47163 * 266.53021 * 5 3 2 35 35 H 1.08003 * 119.92451 * 0.02562 * 7 6 3 36 36 H 1.07996 * 119.85672 * 179.97438 * 8 7 6 37 37 H 1.07998 * 119.92454 * 179.97438 * 9 8 7 38 38 H 1.07996 * 120.08019 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99922 * 0.02562 * 14 12 11 40 40 H 1.09007 * 109.46917 * 299.99957 * 15 14 12 41 41 H 1.08999 * 109.47014 * 59.99880 * 15 14 12 42 42 H 0.97001 * 120.00399 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 1.5300 2.1637 1.2492 6 6 3.5470 1.4425 0.0006 7 6 4.2385 0.2520 -0.0921 8 6 5.6219 0.2502 -0.0912 9 6 6.3213 1.4405 0.0033 10 6 5.6423 2.6374 0.0976 11 6 4.2463 2.6469 0.0893 12 6 3.5119 3.9267 0.1824 13 8 2.3042 3.9457 0.0461 14 7 4.1815 5.0723 0.4185 15 6 3.4538 6.3403 0.5113 16 6 4.4270 7.4596 0.7779 17 1 5.4820 7.2476 0.8696 18 6 3.9703 8.7543 0.9059 19 7 2.6856 9.0125 0.7948 20 14 5.1765 10.1417 1.2372 21 1 6.5536 9.5917 1.3176 22 1 5.1040 11.1343 0.1350 23 1 4.8309 10.8020 2.5216 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.5870 2.6609 -1.0222 30 1 2.2641 2.9045 -1.5662 31 1 1.3757 1.4398 -2.0492 32 1 1.3502 1.4362 2.0409 33 1 2.2758 2.8857 1.5819 34 1 0.6007 2.6829 1.0151 35 1 3.6984 -0.6804 -0.1657 36 1 6.1583 -0.6843 -0.1636 37 1 7.4013 1.4322 0.0039 38 1 6.1893 3.5657 0.1717 39 1 5.1454 5.0571 0.5270 40 1 2.9317 6.5290 -0.4268 41 1 2.7307 6.2855 1.3250 42 1 2.3642 9.9232 0.8853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:43 Heat of formation + Delta-G solvation = -25.353079 kcal Electronic energy + Delta-G solvation = -21821.907304 eV Core-core repulsion = 18766.334144 eV Total energy + Delta-G solvation = -3055.573161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90184 -39.30587 -37.92741 -36.05037 -34.38043 -32.41022 -31.77732 -30.31301 -29.03664 -28.18094 -25.92341 -24.96686 -23.79287 -23.04140 -21.17774 -19.80697 -19.29821 -18.07725 -17.12669 -16.69936 -16.61233 -16.29904 -15.84709 -15.51795 -15.44227 -15.17149 -14.61552 -14.42130 -14.26971 -13.88109 -13.86217 -13.40527 -13.06111 -13.01713 -12.82266 -12.81560 -12.51872 -12.29022 -12.18454 -12.09708 -11.95924 -11.54708 -11.47574 -11.46016 -11.14733 -10.78833 -10.36322 -9.88595 -9.71180 -9.52528 -8.30886 -6.47291 -0.00697 0.47391 1.41340 1.42497 1.55942 2.05423 2.31320 2.60331 2.95831 3.04564 3.64958 3.76136 3.94501 4.09504 4.14538 4.25126 4.38135 4.51903 4.56067 4.62255 4.65064 4.78144 4.87116 4.91625 5.04519 5.05240 5.07870 5.12085 5.18532 5.24253 5.26090 5.29821 5.37956 5.46813 5.49893 5.54674 5.57330 5.59520 5.70515 5.82169 5.84809 6.04760 6.63493 6.93165 7.22032 7.49573 8.81473 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.004741 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.762606 B = 5904.382451 C = 6938.107295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.016 4.016 4 C -0.103 4.103 5 C -0.109 4.109 6 C -0.030 4.030 7 C -0.134 4.134 8 C -0.087 4.087 9 C -0.131 4.131 10 C -0.095 4.095 11 C -0.152 4.152 12 C 0.523 3.477 13 O -0.552 6.552 14 N -0.709 5.709 15 C 0.273 3.727 16 C -0.557 4.557 17 H 0.080 0.920 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.254 1.254 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.401 0.599 40 H -0.012 1.012 41 H -0.012 1.012 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -20.951 -1.624 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.016 4.016 4 C -0.160 4.160 5 C -0.166 4.166 6 C -0.031 4.031 7 C -0.151 4.151 8 C -0.105 4.105 9 C -0.149 4.149 10 C -0.114 4.114 11 C -0.155 4.155 12 C 0.312 3.688 13 O -0.433 6.433 14 N -0.359 5.359 15 C 0.150 3.850 16 C -0.595 4.595 17 H 0.098 0.902 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.807 3.193 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.174 0.826 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.237 0.763 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.075 -20.755 -1.711 21.435 hybrid contribution 0.293 1.642 0.226 1.683 sum 5.368 -19.113 -1.485 19.908 Atomic orbital electron populations 1.21801 0.95511 1.02043 1.01562 1.21761 0.96378 0.93580 1.02796 1.19438 0.89853 0.96406 0.95870 1.21810 1.00089 0.98252 0.95877 1.21958 1.00278 0.98200 0.96127 1.20205 0.95589 0.92155 0.95137 1.21453 0.94979 0.97489 1.01218 1.21769 0.93828 0.99372 0.95484 1.21434 1.01550 0.91447 1.00486 1.21543 0.92181 1.00212 0.97452 1.19864 0.94656 0.92449 1.08571 1.18859 0.87510 0.84772 0.77686 1.90827 1.14983 1.87107 1.50408 1.46174 1.11390 1.07214 1.71144 1.18489 0.92058 0.80463 0.93997 1.21637 0.94537 0.92319 1.50958 0.90161 1.26039 0.97312 1.01899 0.94148 1.70138 1.15527 1.21557 1.49621 0.85127 0.78825 0.77635 0.77741 1.17724 1.20353 1.20362 0.93556 0.93283 0.91016 0.90691 0.90255 0.94282 0.94678 0.93073 0.93534 0.94686 0.94299 0.82628 0.81993 0.82606 0.85181 0.76305 0.99431 0.99437 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.43 71.98 0.68 -2.44 16 2 C -0.11 -2.25 3.28 30.59 0.10 -2.15 16 3 C -0.02 -0.46 0.52 -52.93 -0.03 -0.49 16 4 C -0.10 -3.47 6.38 71.98 0.46 -3.01 16 5 C -0.11 -3.78 6.37 71.98 0.46 -3.32 16 6 C -0.03 -0.86 4.73 -19.61 -0.09 -0.95 16 7 C -0.13 -2.75 8.98 22.23 0.20 -2.55 16 8 C -0.09 -1.45 10.04 22.33 0.22 -1.23 16 9 C -0.13 -2.51 10.03 22.23 0.22 -2.29 16 10 C -0.10 -2.51 9.52 22.53 0.21 -2.30 16 11 C -0.15 -5.05 5.31 -20.09 -0.11 -5.16 16 12 C 0.52 22.30 5.98 86.79 0.52 22.82 16 13 O -0.55 -26.34 8.81 -3.88 -0.03 -26.37 16 14 N -0.71 -31.89 5.50 -469.71 -2.58 -34.48 16 15 C 0.27 15.34 5.43 85.63 0.46 15.81 16 16 C -0.56 -30.98 9.28 25.60 0.24 -30.75 16 17 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 18 C 0.01 0.32 5.46 84.66 0.46 0.78 16 19 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 20 Si 0.98 42.91 29.54 68.60 2.03 44.93 16 21 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H 0.05 1.04 7.08 -2.39 -0.02 1.03 16 25 H 0.05 1.08 7.11 -2.39 -0.02 1.06 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.37 7.70 -2.39 -0.02 1.35 16 28 H 0.08 1.38 7.28 -2.39 -0.02 1.36 16 29 H 0.04 1.43 7.15 -2.39 -0.02 1.41 16 30 H 0.03 1.38 5.45 -2.39 -0.01 1.37 16 31 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 32 H 0.05 1.38 7.58 -2.38 -0.02 1.36 16 33 H 0.03 1.42 4.81 -2.39 -0.01 1.41 16 34 H 0.04 1.47 7.06 -2.39 -0.02 1.46 16 35 H 0.16 2.32 5.90 -2.91 -0.02 2.30 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.13 3.21 6.47 -2.91 -0.02 3.19 16 39 H 0.40 15.48 6.41 -92.71 -0.59 14.89 16 40 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -70.56 323.28 4.14 -66.42 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.43 Total: 23.15 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.01 Total: -17.22 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -2.30 Total: -90.91 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.03 Total: -26.37 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.56 4.14 -66.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.069 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds