Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47101 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47323 * 120.00351 * 2 1 3 6 6 C 1.50702 * 109.47084 * 65.59227 * 5 2 1 7 7 C 1.37978 * 120.07556 * 269.76150 * 6 5 2 8 8 C 1.38330 * 120.14665 * 180.25514 * 7 6 5 9 9 C 1.38393 * 120.28995 * 359.44509 * 8 7 6 10 10 C 1.37925 * 120.14389 * 0.55297 * 9 8 7 11 11 C 1.39554 * 120.07169 * 89.74094 * 6 5 2 12 12 C 1.47847 * 120.14496 * 359.97438 * 11 6 5 13 13 O 1.21542 * 120.00122 * 6.04979 * 12 11 6 14 14 N 1.34778 * 119.99760 * 186.04701 * 12 11 6 15 15 C 1.46504 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47414 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00081 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47454 * 90.00101 * 20 18 16 22 22 H 1.48501 * 109.47035 * 210.00077 * 20 18 16 23 23 H 1.48496 * 109.47456 * 329.99838 * 20 18 16 24 24 H 1.09006 * 109.47141 * 299.99624 * 1 2 3 25 25 H 1.09001 * 109.47672 * 59.99781 * 1 2 3 26 26 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47618 * 300.00313 * 3 2 1 29 29 H 1.09006 * 109.47293 * 60.00207 * 3 2 1 30 30 H 1.09004 * 109.47179 * 293.21848 * 4 2 1 31 31 H 1.08998 * 109.46998 * 53.21265 * 4 2 1 32 32 H 1.09001 * 109.46926 * 173.21421 * 4 2 1 33 33 H 1.09001 * 109.46905 * 305.59669 * 5 2 1 34 34 H 1.08996 * 109.47542 * 185.59307 * 5 2 1 35 35 H 1.07998 * 119.92815 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.85937 * 179.70499 * 8 7 6 37 37 H 1.08004 * 119.92460 * 180.27988 * 9 8 7 38 38 H 1.08004 * 120.07529 * 179.74750 * 10 9 8 39 39 H 0.96997 * 120.00410 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47132 * 300.00505 * 15 14 12 41 41 H 1.09007 * 109.46643 * 59.99990 * 15 14 12 42 42 H 0.96998 * 120.00361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6539 -2.1765 1.1818 7 6 0.4539 -2.5989 1.7159 8 6 0.1004 -3.9351 1.6596 9 6 0.9414 -4.8548 1.0578 10 6 2.1438 -4.4458 0.5200 11 6 2.5092 -3.0997 0.5787 12 6 3.7961 -2.6540 0.0034 13 8 4.1622 -1.5044 0.1511 14 7 4.5634 -3.5224 -0.6847 15 6 5.8390 -3.0809 -1.2543 16 6 6.4959 -4.2336 -1.9689 17 1 6.0115 -5.1985 -1.9965 18 6 7.7152 -4.0565 -2.5875 19 7 8.3053 -2.8817 -2.5536 20 14 8.5291 -5.4852 -3.4739 21 1 8.0915 -5.5015 -4.8928 22 1 10.0047 -5.3298 -3.4128 23 1 8.1384 -6.7603 -2.8208 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.7791 -1.7780 -1.1907 31 1 1.5808 -0.2823 -2.1351 32 1 3.1232 -0.6172 -1.3121 33 1 1.5971 -0.2686 2.1364 34 1 3.1253 -0.6354 1.3007 35 1 -0.2089 -1.8855 2.1830 36 1 -0.8379 -4.2614 2.0833 37 1 0.6574 -5.8959 1.0131 38 1 2.8011 -5.1651 0.0543 39 1 4.2712 -4.4397 -0.8029 40 1 5.6603 -2.2703 -1.9607 41 1 6.4914 -2.7291 -0.4550 42 1 9.1634 -2.7571 -2.9885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935695103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -27.192626 kcal Electronic energy + Delta-G solvation = -21814.909609 eV Core-core repulsion = 18759.256680 eV Total energy + Delta-G solvation = -3055.652929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37533 -37.84383 -36.90047 -34.24585 -32.48241 -31.41996 -30.99133 -27.45398 -27.03216 -26.88603 -26.19187 -23.66738 -22.44821 -21.22994 -19.83936 -18.68530 -17.53513 -16.10134 -15.66644 -15.44591 -15.14003 -14.80773 -14.60923 -14.16126 -14.09020 -13.76150 -13.67494 -12.87859 -12.69009 -12.40974 -12.14562 -12.00688 -11.92740 -11.75624 -11.50930 -11.44605 -11.21434 -11.01016 -10.96755 -10.83289 -10.48773 -10.37497 -10.24680 -10.20752 -9.40634 -8.81759 -8.73981 -8.73247 -8.47069 -7.85235 -6.17999 -4.24813 1.09829 1.46061 3.23556 3.29897 3.32042 3.34989 4.06060 4.16427 4.36268 4.85687 4.93622 4.99656 5.13058 5.15710 5.18486 5.19343 5.39342 5.45214 5.64854 5.77012 5.77687 5.85842 5.95173 5.99901 6.04100 6.06919 6.16517 6.31494 6.33461 6.43057 6.43299 6.50764 6.56901 6.64945 6.85030 6.93580 7.03795 7.30834 7.47139 7.50227 7.65695 7.95518 8.60021 8.76550 9.08175 9.41885 10.92130 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.004923 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.244983 B = 5686.420546 C = 6692.867440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C -0.137 4.137 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.015 4.015 7 C -0.132 4.132 8 C -0.104 4.104 9 C -0.137 4.137 10 C -0.089 4.089 11 C -0.124 4.124 12 C 0.541 3.459 13 O -0.537 6.537 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.389 0.611 40 H 0.029 0.971 41 H 0.028 0.972 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 0.573 7.008 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.048 4.048 3 C -0.194 4.194 4 C -0.207 4.207 5 C -0.139 4.139 6 C -0.016 4.016 7 C -0.150 4.150 8 C -0.122 4.122 9 C -0.155 4.155 10 C -0.108 4.108 11 C -0.127 4.127 12 C 0.327 3.673 13 O -0.418 6.418 14 N -0.353 5.353 15 C 0.130 3.870 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.223 0.777 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.076 1.486 7.014 17.602 hybrid contribution 0.222 -1.359 -0.600 1.502 sum -15.854 0.127 6.413 17.102 Atomic orbital electron populations 1.22007 0.95780 1.01539 1.00888 1.20253 0.94125 0.95129 0.95342 1.21822 1.01911 0.95059 1.00646 1.22231 1.03543 0.99471 0.95440 1.21336 1.06550 0.89293 0.96689 1.19982 0.92398 0.95945 0.93308 1.21023 0.96536 0.95817 1.01605 1.21235 0.99257 0.93320 0.98404 1.21015 0.94768 0.99660 1.00020 1.21382 0.96564 0.94949 0.97903 1.20117 0.96278 0.93778 1.02510 1.18190 0.83792 0.85827 0.79463 1.90523 1.73386 1.18060 1.59803 1.46472 1.22895 1.13051 1.52897 1.19126 0.78324 0.95937 0.93592 1.21213 1.05093 0.96530 1.35393 0.91976 1.24931 0.96809 0.96118 0.96031 1.69967 1.16782 1.22378 1.43098 0.86429 0.78574 0.82084 0.79919 1.20454 1.20992 1.19751 0.93228 0.93213 0.92604 0.91863 0.93191 0.93358 0.93196 0.94255 0.89893 0.92461 0.85539 0.85961 0.86199 0.85924 0.85563 0.77739 0.95327 0.95361 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.07 37.15 0.30 -1.42 16 2 C -0.05 -0.68 0.79 -154.51 -0.12 -0.81 16 3 C -0.14 -1.83 8.47 37.15 0.31 -1.51 16 4 C -0.15 -2.47 6.85 37.16 0.25 -2.22 16 5 C -0.10 -1.52 4.06 -27.88 -0.11 -1.63 16 6 C -0.02 -0.22 4.02 -104.23 -0.42 -0.64 16 7 C -0.13 -1.59 7.98 -39.64 -0.32 -1.91 16 8 C -0.10 -1.14 10.04 -39.49 -0.40 -1.53 16 9 C -0.14 -1.58 10.03 -39.64 -0.40 -1.97 16 10 C -0.09 -1.23 9.53 -39.19 -0.37 -1.60 16 11 C -0.12 -2.01 4.57 -104.97 -0.48 -2.49 16 12 C 0.54 10.72 6.24 -12.33 -0.08 10.65 16 13 O -0.54 -11.80 10.54 5.33 0.06 -11.74 16 14 N -0.71 -14.80 5.50 -62.43 -0.34 -15.14 16 15 C 0.25 6.51 5.43 -5.19 -0.03 6.49 16 16 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 20 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.67 6.30 -51.93 -0.33 0.34 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.85 5.41 -51.93 -0.28 0.57 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.63 5.78 -51.93 -0.30 1.33 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.13 2.26 5.03 -52.21 -0.26 2.00 16 35 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.60 6.45 -52.48 -0.34 1.26 16 39 H 0.39 7.16 6.39 -40.82 -0.26 6.90 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -29.64 329.65 -8.25 -37.89 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.37 Total: 7.21 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.27 Total: -13.83 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.39 Total: -40.19 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.06 Total: -11.74 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.64 -8.25 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935695103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.699 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds