Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47101 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47323 * 120.00351 * 2 1 3 6 6 C 1.50702 * 109.47084 * 65.59227 * 5 2 1 7 7 C 1.37978 * 120.07556 * 269.76150 * 6 5 2 8 8 C 1.38330 * 120.14665 * 180.25514 * 7 6 5 9 9 C 1.38393 * 120.28995 * 359.44509 * 8 7 6 10 10 C 1.37925 * 120.14389 * 0.55297 * 9 8 7 11 11 C 1.39554 * 120.07169 * 89.74094 * 6 5 2 12 12 C 1.47847 * 120.14496 * 359.97438 * 11 6 5 13 13 O 1.21542 * 120.00122 * 6.04979 * 12 11 6 14 14 N 1.34778 * 119.99760 * 186.04701 * 12 11 6 15 15 C 1.46504 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47414 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00081 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47454 * 90.00101 * 20 18 16 22 22 H 1.48501 * 109.47035 * 210.00077 * 20 18 16 23 23 H 1.48496 * 109.47456 * 329.99838 * 20 18 16 24 24 H 1.09006 * 109.47141 * 299.99624 * 1 2 3 25 25 H 1.09001 * 109.47672 * 59.99781 * 1 2 3 26 26 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47618 * 300.00313 * 3 2 1 29 29 H 1.09006 * 109.47293 * 60.00207 * 3 2 1 30 30 H 1.09004 * 109.47179 * 293.21848 * 4 2 1 31 31 H 1.08998 * 109.46998 * 53.21265 * 4 2 1 32 32 H 1.09001 * 109.46926 * 173.21421 * 4 2 1 33 33 H 1.09001 * 109.46905 * 305.59669 * 5 2 1 34 34 H 1.08996 * 109.47542 * 185.59307 * 5 2 1 35 35 H 1.07998 * 119.92815 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.85937 * 179.70499 * 8 7 6 37 37 H 1.08004 * 119.92460 * 180.27988 * 9 8 7 38 38 H 1.08004 * 120.07529 * 179.74750 * 10 9 8 39 39 H 0.96997 * 120.00410 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47132 * 300.00505 * 15 14 12 41 41 H 1.09007 * 109.46643 * 59.99990 * 15 14 12 42 42 H 0.96998 * 120.00361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6539 -2.1765 1.1818 7 6 0.4539 -2.5989 1.7159 8 6 0.1004 -3.9351 1.6596 9 6 0.9414 -4.8548 1.0578 10 6 2.1438 -4.4458 0.5200 11 6 2.5092 -3.0997 0.5787 12 6 3.7961 -2.6540 0.0034 13 8 4.1622 -1.5044 0.1511 14 7 4.5634 -3.5224 -0.6847 15 6 5.8390 -3.0809 -1.2543 16 6 6.4959 -4.2336 -1.9689 17 1 6.0115 -5.1985 -1.9965 18 6 7.7152 -4.0565 -2.5875 19 7 8.3053 -2.8817 -2.5536 20 14 8.5291 -5.4852 -3.4739 21 1 8.0915 -5.5015 -4.8928 22 1 10.0047 -5.3298 -3.4128 23 1 8.1384 -6.7603 -2.8208 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.7791 -1.7780 -1.1907 31 1 1.5808 -0.2823 -2.1351 32 1 3.1232 -0.6172 -1.3121 33 1 1.5971 -0.2686 2.1364 34 1 3.1253 -0.6354 1.3007 35 1 -0.2089 -1.8855 2.1830 36 1 -0.8379 -4.2614 2.0833 37 1 0.6574 -5.8959 1.0131 38 1 2.8011 -5.1651 0.0543 39 1 4.2712 -4.4397 -0.8029 40 1 5.6603 -2.2703 -1.9607 41 1 6.4914 -2.7291 -0.4550 42 1 9.1634 -2.7571 -2.9885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935695103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -44.577121 kcal Electronic energy + Delta-G solvation = -21815.663457 eV Core-core repulsion = 18759.256680 eV Total energy + Delta-G solvation = -3056.406778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65147 -39.26214 -38.00753 -36.11789 -34.42370 -32.47865 -32.20458 -29.29338 -28.18422 -28.04150 -27.40751 -25.26387 -23.95870 -22.37840 -21.41588 -19.88810 -19.07107 -17.84822 -17.12115 -16.69371 -16.53475 -16.36090 -15.95604 -15.49234 -15.44496 -15.00032 -14.86136 -14.40015 -14.07035 -13.95084 -13.69196 -13.25489 -13.22045 -12.96635 -12.91915 -12.74226 -12.57760 -12.52607 -12.38519 -12.21263 -12.07341 -11.61306 -11.54484 -11.44997 -11.33653 -10.79981 -10.22654 -9.91772 -9.71103 -9.50372 -8.30337 -6.46943 -0.00322 0.48089 1.41629 1.44061 1.55210 2.03821 2.31166 2.58514 2.96435 3.05002 3.81729 3.87026 3.93032 4.01488 4.07335 4.18559 4.30879 4.49135 4.59646 4.69480 4.73269 4.79592 4.86355 4.94243 4.94861 5.02782 5.09574 5.10726 5.15641 5.19425 5.23742 5.25850 5.42001 5.46259 5.50008 5.52069 5.54344 5.57125 5.73710 5.80927 5.91208 6.06975 6.63517 6.91340 7.22465 7.50035 8.81781 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.004923 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.244983 B = 5686.420546 C = 6692.867440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.100 4.100 6 C -0.027 4.027 7 C -0.129 4.129 8 C -0.088 4.088 9 C -0.132 4.132 10 C -0.097 4.097 11 C -0.152 4.152 12 C 0.536 3.464 13 O -0.566 6.566 14 N -0.707 5.707 15 C 0.272 3.728 16 C -0.558 4.558 17 H 0.081 0.919 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.983 3.017 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.256 1.256 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.402 0.598 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.897 -1.562 7.858 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.137 4.137 6 C -0.028 4.028 7 C -0.147 4.147 8 C -0.106 4.106 9 C -0.150 4.150 10 C -0.116 4.116 11 C -0.155 4.155 12 C 0.326 3.674 13 O -0.449 6.449 14 N -0.357 5.357 15 C 0.149 3.851 16 C -0.595 4.595 17 H 0.099 0.901 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.806 3.194 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.180 1.180 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.168 0.832 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.148 0.852 39 H 0.238 0.762 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.444 -0.666 7.883 20.992 hybrid contribution 1.178 -0.647 -0.796 1.562 sum -18.266 -1.313 7.087 19.636 Atomic orbital electron populations 1.21921 0.93026 1.02115 1.02297 1.20264 0.96189 0.94749 0.93592 1.21801 1.00002 0.95263 1.02169 1.22122 1.00767 0.99624 0.97489 1.21207 1.04179 0.90421 0.97913 1.20059 0.93500 0.95287 0.93931 1.21312 0.95433 0.97222 1.00727 1.21735 1.00147 0.92416 0.96279 1.21404 0.93397 1.01547 0.98611 1.21536 0.97949 0.93780 0.98325 1.19849 0.94895 0.95608 1.05175 1.18933 0.84908 0.85133 0.78444 1.90544 1.74422 1.19387 1.60518 1.46202 1.21689 1.14081 1.53716 1.18506 0.80024 0.95058 0.91489 1.21597 1.05533 0.97118 1.35279 0.90136 1.26034 0.97467 0.99144 0.96721 1.70132 1.17355 1.25083 1.44229 0.85177 0.77080 0.78508 0.78590 1.19594 1.20829 1.17965 0.91014 0.92631 0.92383 0.94910 0.92301 0.91117 0.93871 0.93494 0.94208 0.90176 0.89549 0.83229 0.82168 0.82701 0.85221 0.76195 0.99354 0.99385 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.07 71.98 0.58 -2.28 16 2 C -0.05 -1.35 0.79 -52.18 -0.04 -1.39 16 3 C -0.14 -3.66 8.47 71.98 0.61 -3.05 16 4 C -0.14 -4.97 6.85 71.98 0.49 -4.48 16 5 C -0.10 -2.99 4.06 29.85 0.12 -2.87 16 6 C -0.03 -0.76 4.02 -19.61 -0.08 -0.84 16 7 C -0.13 -2.63 7.98 22.23 0.18 -2.45 16 8 C -0.09 -1.47 10.04 22.33 0.22 -1.25 16 9 C -0.13 -2.52 10.03 22.23 0.22 -2.30 16 10 C -0.10 -2.55 9.53 22.52 0.21 -2.34 16 11 C -0.15 -5.00 4.57 -20.09 -0.09 -5.09 16 12 C 0.54 22.87 6.24 86.79 0.54 23.41 16 13 O -0.57 -27.48 10.54 -3.85 -0.04 -27.52 16 14 N -0.71 -31.72 5.50 -469.71 -2.58 -34.30 16 15 C 0.27 15.27 5.43 85.63 0.46 15.74 16 16 C -0.56 -30.94 9.28 25.60 0.24 -30.70 16 17 H 0.08 4.07 7.60 -2.91 -0.02 4.04 16 18 C 0.01 0.34 5.46 84.65 0.46 0.80 16 19 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 20 Si 0.98 42.80 29.54 68.60 2.03 44.83 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.20 6.30 -2.39 -0.02 1.18 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.52 5.41 -2.38 -0.01 1.51 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.71 5.78 -2.39 -0.01 1.70 16 33 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.09 3.33 5.03 -6.78 -0.03 3.30 16 35 H 0.15 2.23 8.05 -2.91 -0.02 2.21 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.13 3.18 6.45 -2.91 -0.02 3.16 16 39 H 0.40 15.43 6.39 -92.71 -0.59 14.83 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -70.38 329.65 4.22 -66.16 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.40 Total: 26.24 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.14 Total: -19.08 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -2.30 Total: -90.63 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.04 Total: -27.52 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.38 4.22 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935695103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.584 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds