Wall clock time and date at job start Mon Mar 30 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46766 * 199.60690 * 3 2 1 5 5 C 1.37094 * 120.00507 * 264.13933 * 4 3 2 6 6 H 1.08000 * 120.00380 * 197.43900 * 5 4 3 7 7 C 1.38949 * 119.99610 * 17.43775 * 5 4 3 8 8 N 1.31411 * 120.00332 * 21.52164 * 7 5 4 9 9 Si 1.86806 * 120.00150 * 201.52050 * 7 5 4 10 10 H 1.48503 * 109.46953 * 60.00101 * 9 7 5 11 11 H 1.48498 * 109.47495 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47012 * 300.00431 * 9 7 5 13 13 C 1.34784 * 119.99823 * 84.14486 * 4 3 2 14 14 O 1.21286 * 120.00044 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99726 * 359.97438 * 13 4 3 16 16 C 1.53001 * 109.47215 * 180.02562 * 15 13 4 17 17 C 1.50707 * 109.47175 * 300.00413 * 16 15 13 18 18 C 1.31005 * 119.99486 * 359.97438 * 17 16 15 19 19 C 1.53010 * 109.47089 * 59.99960 * 16 15 13 20 20 C 1.52989 * 109.46936 * 180.02562 * 19 16 15 21 21 C 1.52999 * 109.47585 * 299.99803 * 20 19 16 22 22 C 1.53001 * 109.46691 * 60.00532 * 21 20 19 23 23 C 1.52995 * 109.47641 * 180.02562 * 16 15 13 24 24 H 4.40635 * 5.51477 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47104 * 79.61075 * 3 2 1 26 26 H 1.09001 * 109.47219 * 319.60886 * 3 2 1 27 27 H 0.97001 * 120.00519 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47580 * 60.00773 * 15 13 4 29 29 H 1.09003 * 109.47753 * 300.00404 * 15 13 4 30 30 H 1.07996 * 119.99832 * 179.97438 * 17 16 15 31 31 H 1.07995 * 120.00157 * 0.02562 * 18 17 16 32 32 H 1.07998 * 119.99464 * 179.72514 * 18 17 16 33 33 H 1.08999 * 109.46791 * 300.00738 * 19 16 15 34 34 H 1.08995 * 109.46477 * 60.00355 * 19 16 15 35 35 H 1.09007 * 109.46822 * 180.02562 * 20 19 16 36 36 H 1.09000 * 109.47859 * 60.00693 * 20 19 16 37 37 H 1.08993 * 109.47022 * 300.00619 * 21 20 19 38 38 H 1.08997 * 109.47435 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.47052 * 180.02562 * 22 21 20 40 40 H 1.08993 * 109.47316 * 60.00267 * 22 21 20 41 41 H 1.09001 * 109.46857 * 299.99867 * 23 16 15 42 42 H 1.09000 * 109.47432 * 59.99711 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3020 0.4635 5 6 3.4760 2.2693 -0.4457 6 1 4.0881 3.1051 -0.1404 7 6 3.0354 2.1744 -1.7600 8 7 1.9845 1.4405 -2.0494 9 14 3.9370 3.0901 -3.1159 10 1 5.3460 2.6246 -3.1753 11 1 3.2736 2.8256 -4.4178 12 1 3.9088 4.5475 -2.8323 13 6 3.2458 1.5483 1.7839 14 8 3.6500 2.6256 2.1677 15 6 2.8691 0.4852 2.7833 16 6 3.0878 1.0175 4.2010 17 6 4.5382 1.3852 4.3813 18 6 5.3826 1.2238 3.3928 19 6 2.2166 2.2559 4.4209 20 6 2.4358 2.7885 5.8382 21 6 2.0537 1.7094 6.8534 22 6 2.9250 0.4711 6.6335 23 6 2.7060 -0.0620 5.2157 24 1 -1.0502 -0.0003 -0.0003 25 1 3.0094 -0.1845 -1.0109 26 1 3.0097 -0.7819 0.6659 27 1 1.6766 1.3745 -2.9670 28 1 3.4895 -0.3971 2.6265 29 1 1.8200 0.2195 2.6532 30 1 4.8813 1.7818 5.3254 31 1 5.0392 0.8277 2.4486 32 1 6.4210 1.4915 3.5206 33 1 2.4890 3.0248 3.6979 34 1 1.1677 1.9899 4.2905 35 1 1.8148 3.6705 5.9950 36 1 3.4848 3.0546 5.9683 37 1 1.0048 1.4434 6.7233 38 1 2.2103 2.0887 7.8632 39 1 2.6525 -0.2979 7.3565 40 1 3.9739 0.7371 6.7635 41 1 1.6571 -0.3283 5.0854 42 1 3.3269 -0.9440 5.0589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935811791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:44 Heat of formation + Delta-G solvation = 44.966653 kcal Electronic energy + Delta-G solvation = -22448.168005 eV Core-core repulsion = 19395.644137 eV Total energy + Delta-G solvation = -3052.523868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01733 -37.86319 -35.23744 -33.40684 -32.07218 -31.19051 -30.39655 -30.00602 -27.34926 -26.25632 -24.20477 -22.31493 -21.91953 -20.65750 -18.90672 -17.85022 -17.27225 -16.54465 -16.10851 -15.53572 -14.88717 -14.56381 -14.17884 -14.03461 -13.84921 -13.43593 -13.09336 -12.70644 -12.45040 -12.21842 -11.95157 -11.73396 -11.63218 -11.32731 -11.23482 -11.06270 -10.95762 -10.82254 -10.62526 -10.51545 -10.27565 -9.81437 -9.74087 -9.63466 -9.32079 -9.24091 -8.85748 -8.63973 -8.00679 -7.75357 -6.28959 -3.80674 3.05782 3.19317 3.26609 3.30008 3.71289 3.97150 4.08115 4.21340 4.83522 4.98372 5.03550 5.07784 5.19850 5.40185 5.48121 5.52602 5.56763 5.65663 5.78328 5.81477 5.88385 5.96447 6.00424 6.10428 6.17871 6.20886 6.23782 6.34277 6.36050 6.41966 6.51787 6.58918 6.65567 6.77339 6.85567 7.05001 7.14124 7.28593 7.54073 7.60411 8.11357 8.48525 8.83014 9.20423 9.42166 9.99783 10.72013 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.005654 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.559472 B = 4950.968934 C = 5430.271986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.445 5.445 5 C -0.313 4.313 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.918 3.082 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.457 3.543 14 O -0.567 6.567 15 C -0.129 4.129 16 C -0.003 4.003 17 C -0.138 4.138 18 C -0.173 4.173 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.106 4.106 24 H 0.198 0.802 25 H 0.108 0.892 26 H 0.060 0.940 27 H 0.267 0.733 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 -5.285 11.069 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.112 4.112 3 C 0.108 3.892 4 N -0.164 5.164 5 C -0.440 4.440 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.745 3.255 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.246 3.754 14 O -0.451 6.451 15 C -0.169 4.169 16 C -0.004 4.004 17 C -0.156 4.156 18 C -0.209 4.209 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.143 4.143 24 H 0.215 0.785 25 H 0.126 0.874 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.545 -4.787 11.055 12.059 hybrid contribution -0.091 0.412 -1.014 1.098 sum 0.454 -4.375 10.041 10.963 Atomic orbital electron populations 1.24261 0.95373 1.03070 1.05587 1.23210 0.94384 0.97555 0.96076 1.18243 0.84247 0.85405 1.01301 1.43743 1.56466 1.11855 1.04367 1.19585 1.30134 1.05545 0.88766 0.87931 1.25250 0.95203 0.98010 0.98873 1.70079 1.19812 1.40396 1.20006 0.86126 0.79645 0.79957 0.79753 1.19997 1.21143 1.19970 1.19889 0.83734 0.89010 0.82775 1.90493 1.50122 1.26328 1.78129 1.21763 1.02213 0.98529 0.94429 1.19270 0.93670 0.94829 0.92619 1.22430 0.93934 1.00767 0.98429 1.23858 0.98081 1.00647 0.98362 1.21807 0.97796 0.98550 0.97088 1.21528 1.01282 0.97263 0.95318 1.21551 0.99571 0.96024 0.98455 1.21523 1.00231 0.97120 0.96520 1.21584 1.00951 0.97532 0.94251 0.78476 0.87386 0.92203 0.92223 0.90670 0.90373 0.88405 0.88186 0.89951 0.88174 0.93283 0.92803 0.92020 0.92419 0.92848 0.92721 0.91875 0.92161 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.48 19.25 29.55 0.57 -4.91 16 2 C -0.11 -2.47 10.87 -37.12 -0.40 -2.87 16 3 C 0.23 5.07 4.91 -6.83 -0.03 5.04 16 4 N -0.45 -10.93 2.60 -117.93 -0.31 -11.24 16 5 C -0.31 -8.46 9.33 -14.94 -0.14 -8.60 16 6 H 0.10 2.93 7.38 -52.49 -0.39 2.54 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.70 16 8 N -0.86 -22.68 9.48 55.50 0.53 -22.15 16 9 Si 0.92 20.50 29.60 -169.99 -5.03 15.46 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.46 10.47 5.04 -10.98 -0.06 10.42 16 14 O -0.57 -14.37 11.10 5.55 0.06 -14.31 16 15 C -0.13 -2.36 2.85 -27.88 -0.08 -2.44 16 16 C 0.00 -0.06 0.50 -155.65 -0.08 -0.13 16 17 C -0.14 -2.29 6.66 -36.02 -0.24 -2.53 16 18 C -0.17 -3.10 11.96 29.01 0.35 -2.75 16 19 C -0.12 -1.98 4.43 -26.73 -0.12 -2.10 16 20 C -0.12 -1.65 5.69 -26.74 -0.15 -1.81 16 21 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 22 C -0.12 -1.37 5.69 -26.70 -0.15 -1.52 16 23 C -0.11 -1.40 4.73 -26.71 -0.13 -1.53 16 24 H 0.20 3.35 7.80 -54.08 -0.42 2.93 16 25 H 0.11 2.51 6.44 -51.93 -0.33 2.17 16 26 H 0.06 1.10 6.69 -51.93 -0.35 0.75 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.07 1.25 6.77 -51.93 -0.35 0.90 16 29 H 0.08 1.43 7.50 -51.93 -0.39 1.04 16 30 H 0.10 1.49 5.93 -52.49 -0.31 1.18 16 31 H 0.10 1.99 4.51 -52.49 -0.24 1.75 16 32 H 0.08 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.10 2.12 5.51 -51.93 -0.29 1.83 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.89 6.62 -51.93 -0.34 0.55 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.75 6.62 -51.93 -0.34 0.40 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -28.96 321.95 -7.08 -36.04 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.27 Total: 7.96 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.91 Total: -16.61 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.22 Total: -33.39 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.06 Total: -14.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.96 -7.08 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.003 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds