Wall clock time and date at job start Mon Mar 30 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46766 * 199.60690 * 3 2 1 5 5 C 1.37094 * 120.00507 * 264.13933 * 4 3 2 6 6 H 1.08000 * 120.00380 * 197.43900 * 5 4 3 7 7 C 1.38949 * 119.99610 * 17.43775 * 5 4 3 8 8 N 1.31411 * 120.00332 * 21.52164 * 7 5 4 9 9 Si 1.86806 * 120.00150 * 201.52050 * 7 5 4 10 10 H 1.48503 * 109.46953 * 60.00101 * 9 7 5 11 11 H 1.48498 * 109.47495 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47012 * 300.00431 * 9 7 5 13 13 C 1.34784 * 119.99823 * 84.14486 * 4 3 2 14 14 O 1.21286 * 120.00044 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99726 * 359.97438 * 13 4 3 16 16 C 1.53001 * 109.47215 * 180.02562 * 15 13 4 17 17 C 1.50707 * 109.47175 * 300.00413 * 16 15 13 18 18 C 1.31005 * 119.99486 * 359.97438 * 17 16 15 19 19 C 1.53010 * 109.47089 * 59.99960 * 16 15 13 20 20 C 1.52989 * 109.46936 * 180.02562 * 19 16 15 21 21 C 1.52999 * 109.47585 * 299.99803 * 20 19 16 22 22 C 1.53001 * 109.46691 * 60.00532 * 21 20 19 23 23 C 1.52995 * 109.47641 * 180.02562 * 16 15 13 24 24 H 4.40635 * 5.51477 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47104 * 79.61075 * 3 2 1 26 26 H 1.09001 * 109.47219 * 319.60886 * 3 2 1 27 27 H 0.97001 * 120.00519 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47580 * 60.00773 * 15 13 4 29 29 H 1.09003 * 109.47753 * 300.00404 * 15 13 4 30 30 H 1.07996 * 119.99832 * 179.97438 * 17 16 15 31 31 H 1.07995 * 120.00157 * 0.02562 * 18 17 16 32 32 H 1.07998 * 119.99464 * 179.72514 * 18 17 16 33 33 H 1.08999 * 109.46791 * 300.00738 * 19 16 15 34 34 H 1.08995 * 109.46477 * 60.00355 * 19 16 15 35 35 H 1.09007 * 109.46822 * 180.02562 * 20 19 16 36 36 H 1.09000 * 109.47859 * 60.00693 * 20 19 16 37 37 H 1.08993 * 109.47022 * 300.00619 * 21 20 19 38 38 H 1.08997 * 109.47435 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.47052 * 180.02562 * 22 21 20 40 40 H 1.08993 * 109.47316 * 60.00267 * 22 21 20 41 41 H 1.09001 * 109.46857 * 299.99867 * 23 16 15 42 42 H 1.09000 * 109.47432 * 59.99711 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3020 0.4635 5 6 3.4760 2.2693 -0.4457 6 1 4.0881 3.1051 -0.1404 7 6 3.0354 2.1744 -1.7600 8 7 1.9845 1.4405 -2.0494 9 14 3.9370 3.0901 -3.1159 10 1 5.3460 2.6246 -3.1753 11 1 3.2736 2.8256 -4.4178 12 1 3.9088 4.5475 -2.8323 13 6 3.2458 1.5483 1.7839 14 8 3.6500 2.6256 2.1677 15 6 2.8691 0.4852 2.7833 16 6 3.0878 1.0175 4.2010 17 6 4.5382 1.3852 4.3813 18 6 5.3826 1.2238 3.3928 19 6 2.2166 2.2559 4.4209 20 6 2.4358 2.7885 5.8382 21 6 2.0537 1.7094 6.8534 22 6 2.9250 0.4711 6.6335 23 6 2.7060 -0.0620 5.2157 24 1 -1.0502 -0.0003 -0.0003 25 1 3.0094 -0.1845 -1.0109 26 1 3.0097 -0.7819 0.6659 27 1 1.6766 1.3745 -2.9670 28 1 3.4895 -0.3971 2.6265 29 1 1.8200 0.2195 2.6532 30 1 4.8813 1.7818 5.3254 31 1 5.0392 0.8277 2.4486 32 1 6.4210 1.4915 3.5206 33 1 2.4890 3.0248 3.6979 34 1 1.1677 1.9899 4.2905 35 1 1.8148 3.6705 5.9950 36 1 3.4848 3.0546 5.9683 37 1 1.0048 1.4434 6.7233 38 1 2.2103 2.0887 7.8632 39 1 2.6525 -0.2979 7.3565 40 1 3.9739 0.7371 6.7635 41 1 1.6571 -0.3283 5.0854 42 1 3.3269 -0.9440 5.0589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935811791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:43 Heat of formation + Delta-G solvation = 30.752238 kcal Electronic energy + Delta-G solvation = -22448.784388 eV Core-core repulsion = 19395.644137 eV Total energy + Delta-G solvation = -3053.140251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51598 -39.38849 -36.99998 -34.76341 -33.93606 -32.97616 -31.51983 -31.37727 -28.89428 -27.95155 -26.02303 -23.44495 -23.21362 -21.90369 -20.54456 -19.63750 -18.70872 -18.25065 -17.81205 -16.98447 -16.37801 -16.21623 -15.85317 -15.34959 -15.10009 -14.96661 -14.30926 -14.19659 -14.06021 -13.90471 -13.52093 -13.18133 -13.03717 -12.80897 -12.67541 -12.62656 -12.45581 -12.28653 -12.09513 -11.94376 -11.76159 -11.19718 -11.08341 -11.01134 -10.87072 -10.85436 -10.56518 -10.22424 -9.74328 -9.56359 -8.26644 -5.85175 1.38457 1.42196 1.51267 1.68426 1.97279 2.21416 2.34837 2.40383 3.10370 3.26490 3.74867 3.87199 3.89297 4.01207 4.15131 4.29013 4.33727 4.41472 4.52029 4.59284 4.64129 4.73994 4.76874 4.79659 4.90662 4.93496 5.00463 5.01109 5.13282 5.27024 5.32017 5.34621 5.39645 5.44212 5.50124 5.51579 5.66386 5.74160 5.90155 6.12785 6.19600 6.53341 7.15796 7.24680 7.53149 8.13524 8.71894 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.005654 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.559472 B = 4950.968934 C = 5430.271986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.150 4.150 3 C 0.235 3.765 4 N -0.462 5.462 5 C -0.344 4.344 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.876 5.876 9 Si 0.978 3.022 10 H -0.269 1.269 11 H -0.275 1.275 12 H -0.282 1.282 13 C 0.454 3.546 14 O -0.598 6.598 15 C -0.119 4.119 16 C -0.005 4.005 17 C -0.126 4.126 18 C -0.195 4.195 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.101 4.101 24 H 0.231 0.769 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.269 0.731 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -6.516 12.653 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.152 4.152 3 C 0.112 3.888 4 N -0.182 5.182 5 C -0.472 4.472 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.514 5.514 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.200 1.200 12 H -0.207 1.207 13 C 0.245 3.755 14 O -0.483 6.483 15 C -0.159 4.159 16 C -0.005 4.005 17 C -0.144 4.144 18 C -0.232 4.232 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.138 4.138 24 H 0.248 0.752 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.073 -6.042 12.642 14.012 hybrid contribution 0.046 0.843 -1.488 1.711 sum -0.027 -5.199 11.154 12.306 Atomic orbital electron populations 1.25120 0.96352 1.01447 1.03995 1.23513 0.95054 0.99053 0.97569 1.18251 0.84540 0.85017 1.01008 1.43929 1.57117 1.12371 1.04735 1.19461 1.31218 1.06191 0.90304 0.90813 1.25878 0.95543 0.98775 1.00036 1.70174 1.20116 1.40840 1.20287 0.85238 0.78846 0.78231 0.77432 1.19368 1.20032 1.20736 1.20692 0.82193 0.89611 0.82981 1.90476 1.51106 1.28030 1.78713 1.21743 1.02357 0.97528 0.94291 1.19354 0.93303 0.95561 0.92312 1.22645 0.93889 0.99154 0.98699 1.23819 0.99135 1.02422 0.97824 1.21692 0.97681 0.97751 0.97969 1.21495 1.01181 0.98319 0.94079 1.21529 0.99843 0.95233 0.98512 1.21535 1.00285 0.97552 0.95772 1.21563 1.01520 0.96589 0.94176 0.75196 0.89265 0.88983 0.92123 0.88874 0.90184 0.86541 0.90483 0.88906 0.92793 0.93518 0.92573 0.92419 0.92003 0.90789 0.90245 0.91777 0.91534 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.06 19.25 74.32 1.43 -8.63 16 2 C -0.15 -6.66 10.87 31.13 0.34 -6.33 16 3 C 0.23 10.41 4.91 84.57 0.42 10.82 16 4 N -0.46 -23.41 2.60 -645.41 -1.68 -25.09 16 5 C -0.34 -19.37 9.33 84.04 0.78 -18.59 16 6 H 0.07 4.47 7.38 -2.91 -0.02 4.45 16 7 C 0.00 0.02 4.87 84.93 0.41 0.43 16 8 N -0.88 -46.37 9.48 21.66 0.21 -46.17 16 9 Si 0.98 42.81 29.60 68.60 2.03 44.84 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.45 21.47 5.04 87.65 0.44 21.92 16 14 O -0.60 -31.73 11.10 -3.05 -0.03 -31.76 16 15 C -0.12 -4.31 2.85 29.85 0.08 -4.22 16 16 C 0.00 -0.15 0.50 -52.92 -0.03 -0.18 16 17 C -0.13 -4.09 6.66 25.64 0.17 -3.92 16 18 C -0.20 -7.05 11.96 67.78 0.81 -6.24 16 19 C -0.11 -3.88 4.43 30.59 0.14 -3.74 16 20 C -0.11 -3.05 5.69 30.59 0.17 -2.87 16 21 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 22 C -0.11 -2.24 5.69 30.61 0.17 -2.06 16 23 C -0.10 -2.38 4.73 30.61 0.14 -2.23 16 24 H 0.23 7.21 7.80 -4.41 -0.03 7.18 16 25 H 0.09 4.24 6.44 -2.38 -0.02 4.23 16 26 H 0.09 3.35 6.69 -2.39 -0.02 3.33 16 27 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.09 3.01 6.77 -2.39 -0.02 2.99 16 29 H 0.08 2.87 7.50 -2.39 -0.02 2.85 16 30 H 0.12 3.34 5.93 -2.91 -0.02 3.32 16 31 H 0.08 3.14 4.51 -2.91 -0.01 3.13 16 32 H 0.09 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.05 2.36 5.51 -2.39 -0.01 2.35 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.06 1.58 6.62 -2.39 -0.02 1.57 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 1.27 6.62 -2.39 -0.02 1.25 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.60 321.95 7.19 -57.41 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.99 Total: 28.78 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.67 Total: -28.01 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.47 Total: -71.26 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.03 Total: -31.76 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -64.60 7.19 -57.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.163 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds