Wall clock time and date at job start Mon Mar 30 2020 02:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99770 * 269.72838 * 4 3 2 6 6 C 1.38239 * 119.99901 * 179.76875 * 5 4 3 7 7 C 1.38238 * 119.99492 * 0.48004 * 6 5 4 8 8 C 1.50706 * 119.99437 * 179.77082 * 7 6 5 9 9 N 1.46899 * 109.46930 * 270.02383 * 8 7 6 10 10 C 1.47478 * 110.99958 * 74.03374 * 9 8 7 11 11 C 1.53511 * 87.93133 * 138.70261 * 10 9 8 12 12 O 1.42900 * 114.34682 * 87.63366 * 11 10 9 13 13 C 1.50707 * 114.17042 * 220.32794 * 11 10 9 14 14 H 1.07991 * 119.99896 * 93.83665 * 13 11 10 15 15 C 1.37874 * 119.99591 * 273.84197 * 13 11 10 16 16 N 1.31512 * 120.00738 * 359.97438 * 15 13 11 17 17 Si 1.86810 * 119.99783 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46950 * 89.99887 * 17 15 13 19 19 H 1.48500 * 109.47090 * 209.99848 * 17 15 13 20 20 H 1.48496 * 109.47017 * 330.00178 * 17 15 13 21 21 C 1.47480 * 110.99802 * 170.00470 * 9 8 7 22 22 C 1.38225 * 120.00505 * 359.79428 * 7 6 5 23 23 C 1.38232 * 119.99860 * 90.00280 * 4 3 2 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.08001 * 120.00330 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.00120 * 180.25541 * 6 5 4 33 33 H 1.09002 * 109.47512 * 30.02407 * 8 7 6 34 34 H 1.09001 * 109.46797 * 150.02415 * 8 7 6 35 35 H 1.09006 * 113.47576 * 253.46631 * 10 9 8 36 36 H 1.08994 * 113.47863 * 23.93112 * 10 9 8 37 37 H 0.96708 * 114.00097 * 86.07645 * 12 11 10 38 38 H 0.97004 * 120.00700 * 180.02562 * 16 15 13 39 39 H 1.09002 * 113.47677 * 336.05927 * 21 9 8 40 40 H 1.08996 * 113.47941 * 106.46757 * 21 9 8 41 41 H 1.07998 * 120.00220 * 179.97438 * 22 7 6 42 42 H 1.07998 * 120.00407 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2386 1.4480 1.1962 6 6 5.6210 1.4432 1.1957 7 6 6.3116 1.4429 -0.0018 8 6 7.8187 1.4429 -0.0023 9 7 8.3083 2.8278 -0.0023 10 6 8.1279 3.4521 1.3216 11 6 9.5182 4.0808 1.1529 12 8 9.5174 5.3393 0.4758 13 6 10.3518 4.0812 2.4084 14 1 11.0460 3.2755 2.5958 15 6 10.2279 5.1100 3.3178 16 7 9.3827 6.0914 3.0895 17 14 11.2606 5.1101 4.8745 18 1 12.5396 5.8207 4.6199 19 1 10.5189 5.7997 5.9605 20 1 11.5445 3.7102 5.2802 21 6 9.7630 2.8741 0.2362 22 6 5.6200 1.4431 -1.1986 23 6 4.2376 1.4428 -1.1981 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.6990 1.4527 2.1318 32 1 6.1613 1.4433 2.1307 33 1 8.1824 0.9289 0.8874 34 1 8.1816 0.9292 -0.8926 35 1 7.3208 4.1843 1.3501 36 1 8.0733 2.7316 2.1376 37 1 9.3630 6.0978 1.0556 38 1 9.2958 6.8155 3.7291 39 1 10.1447 1.9993 0.7626 40 1 10.3418 3.1152 -0.6554 41 1 6.1596 1.4433 -2.1341 42 1 3.6973 1.4434 -2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116741353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:17 Heat of formation + Delta-G solvation = -24.188981 kcal Electronic energy + Delta-G solvation = -20897.397459 eV Core-core repulsion = 17841.874777 eV Total energy + Delta-G solvation = -3055.522681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23625 -40.05420 -36.68165 -35.77062 -34.11066 -32.90409 -31.81376 -30.11279 -28.13584 -26.77561 -26.23609 -23.89863 -23.60123 -22.40513 -21.33625 -20.49661 -19.26829 -17.28715 -16.98566 -16.83671 -16.70958 -16.17634 -15.91145 -15.71915 -15.24463 -14.80425 -14.46684 -14.30085 -14.18368 -13.98824 -13.82905 -13.37365 -13.13358 -13.06093 -12.91340 -12.78812 -12.50400 -12.31903 -12.21460 -12.02495 -12.00379 -11.78777 -11.54908 -11.46709 -11.18616 -10.65836 -10.11942 -9.80740 -9.71343 -9.36253 -8.26032 -6.44210 0.41853 0.52661 1.41809 1.43450 1.53657 2.36281 2.78654 2.94859 3.35829 3.73743 3.87211 3.92315 4.02508 4.14022 4.18089 4.22480 4.28022 4.35696 4.41443 4.52325 4.55076 4.61001 4.68511 4.71052 4.85089 4.89327 4.90071 5.03809 5.11157 5.13423 5.17588 5.27507 5.30834 5.37479 5.39193 5.47550 5.56673 5.73647 5.74261 5.76738 5.95261 6.14206 6.30945 6.61817 7.28923 7.54446 8.79199 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.003661 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.146925 B = 7645.873156 C = 8151.902849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.076 4.076 4 C -0.089 4.089 5 C -0.126 4.126 6 C -0.124 4.124 7 C -0.091 4.091 8 C 0.056 3.944 9 N -0.469 5.469 10 C 0.002 3.998 11 C 0.217 3.783 12 O -0.584 6.584 13 C -0.557 4.557 14 H 0.067 0.933 15 C 0.025 3.975 16 N -0.920 5.920 17 Si 0.970 3.030 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.266 1.266 21 C 0.012 3.988 22 C -0.110 4.110 23 C -0.123 4.123 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.383 0.617 38 H 0.274 0.726 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -11.600 -4.464 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.113 4.113 4 C -0.089 4.089 5 C -0.144 4.144 6 C -0.143 4.143 7 C -0.091 4.091 8 C -0.072 4.072 9 N -0.192 5.192 10 C -0.128 4.128 11 C 0.176 3.824 12 O -0.396 6.396 13 C -0.595 4.595 14 H 0.085 0.915 15 C -0.175 4.175 16 N -0.562 5.562 17 Si 0.795 3.205 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.117 4.117 22 C -0.128 4.128 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.147 0.853 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.965 -11.545 -5.528 18.944 hybrid contribution 0.893 0.230 2.062 2.259 sum -13.072 -11.315 -3.465 17.632 Atomic orbital electron populations 1.21775 0.94625 1.02148 1.02231 1.21471 0.96456 0.95288 1.02055 1.20653 0.89081 0.98127 1.03472 1.20160 0.96935 0.99072 0.92732 1.21180 0.93473 1.01080 0.98673 1.21163 0.95128 1.00542 0.97420 1.19788 0.94759 1.00573 0.93997 1.21662 0.92131 0.91451 1.01912 1.68959 1.07239 1.14178 1.28779 1.24315 1.00881 0.97803 0.89771 1.19762 0.91244 0.82001 0.89358 1.86009 1.94966 1.17850 1.40752 1.21844 1.24145 1.08850 1.04619 0.91451 1.25858 0.95624 0.94513 1.01475 1.69380 1.36643 1.11801 1.38330 0.85372 0.78448 0.78553 0.78149 1.19991 1.20526 1.19063 1.24008 0.90490 0.98050 0.99159 1.21175 0.94783 0.99388 0.97463 1.21260 0.93641 1.00665 0.98514 0.92145 0.92490 0.92169 0.91998 0.92475 0.90150 0.90735 0.84963 0.87162 0.93642 0.88974 0.94137 0.92372 0.76204 0.91578 0.90242 0.90903 0.85341 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 3 C -0.08 -1.36 5.35 29.85 0.16 -1.20 16 4 C -0.09 -2.15 5.13 -19.87 -0.10 -2.25 16 5 C -0.13 -3.44 9.70 22.27 0.22 -3.22 16 6 C -0.12 -3.95 9.12 22.27 0.20 -3.75 16 7 C -0.09 -2.97 5.18 -19.87 -0.10 -3.07 16 8 C 0.06 1.94 4.98 85.56 0.43 2.37 16 9 N -0.47 -20.05 6.40 -932.86 -5.97 -26.02 16 10 C 0.00 0.10 6.25 83.57 0.52 0.62 16 11 C 0.22 11.34 1.57 -11.19 -0.02 11.32 16 12 O -0.58 -33.13 13.54 -148.98 -2.02 -35.15 16 13 C -0.56 -29.98 8.68 25.60 0.22 -29.76 16 14 H 0.07 3.51 7.81 -2.92 -0.02 3.48 16 15 C 0.02 1.31 5.39 84.65 0.46 1.77 16 16 N -0.92 -50.40 11.02 21.45 0.24 -50.16 16 17 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 C 0.01 0.51 7.12 83.57 0.60 1.11 16 22 C -0.11 -3.17 9.70 22.27 0.22 -2.95 16 23 C -0.12 -3.06 9.70 22.27 0.22 -2.84 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 31 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.11 3.59 7.70 -2.91 -0.02 3.57 16 33 H 0.05 1.55 7.51 -2.39 -0.02 1.53 16 34 H 0.09 2.81 8.09 -2.39 -0.02 2.79 16 35 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.06 2.72 7.30 -2.39 -0.02 2.71 16 37 H 0.38 22.24 6.33 -74.05 -0.47 21.77 16 38 H 0.27 14.14 8.31 -92.71 -0.77 13.36 16 39 H 0.08 3.21 7.72 -2.39 -0.02 3.19 16 40 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -60.12 343.63 -1.31 -61.42 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.52 Total: 40.82 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.90 Total: -34.60 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -5.74 Total: -76.18 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -2.02 Total: -35.15 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -60.12 -1.31 -61.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116741353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.236 kcal (2) G-P(sol) polarization free energy of solvation -60.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds