Wall clock time and date at job start Mon Mar 30 2020 02:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 C 1.52999 * 109.47194 * 239.99626 * 2 1 3 5 5 C 1.50702 * 109.46749 * 185.00163 * 4 2 1 6 6 C 1.38284 * 119.92775 * 269.72029 * 5 4 2 7 7 C 1.38114 * 120.07007 * 179.76619 * 6 5 4 8 8 C 1.38875 * 119.92728 * 0.51621 * 7 6 5 9 9 N 1.39926 * 120.07063 * 179.72104 * 8 7 6 10 10 C 1.34779 * 119.99809 * 213.30819 * 9 8 7 11 11 O 1.21281 * 120.00048 * 5.27842 * 10 9 8 12 12 C 1.50700 * 119.99675 * 185.27335 * 10 9 8 13 13 C 1.53002 * 109.46751 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.46751 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00146 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00121 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47188 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46886 * 120.00333 * 18 16 14 21 21 H 1.48505 * 109.47039 * 240.00305 * 18 16 14 22 22 C 1.38881 * 119.85986 * 359.74161 * 8 7 6 23 23 C 1.38114 * 119.92565 * 0.02562 * 22 8 7 24 24 H 1.08998 * 109.46541 * 60.00238 * 1 2 3 25 25 H 1.09003 * 109.47099 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46919 * 300.00414 * 1 2 3 27 27 H 1.09004 * 109.46996 * 119.99203 * 2 1 3 28 28 H 1.09001 * 109.47689 * 60.00057 * 3 2 1 29 29 H 1.09006 * 109.46765 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47346 * 299.99269 * 3 2 1 31 31 H 1.08999 * 109.46977 * 305.00146 * 4 2 1 32 32 H 1.08992 * 109.46800 * 65.00503 * 4 2 1 33 33 H 1.07998 * 119.96387 * 0.03000 * 6 5 4 34 34 H 1.08003 * 120.03765 * 180.25776 * 7 6 5 35 35 H 0.96999 * 119.99985 * 33.30847 * 9 8 7 36 36 H 1.09003 * 109.46923 * 300.00146 * 12 10 9 37 37 H 1.09000 * 109.47292 * 59.99963 * 12 10 9 38 38 H 1.09003 * 109.46718 * 299.99280 * 13 12 10 39 39 H 1.08989 * 109.47513 * 60.00201 * 13 12 10 40 40 H 0.96996 * 120.00734 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.03359 * 179.97438 * 22 8 7 42 42 H 1.08003 * 119.96134 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.8294 -1.1887 6 6 4.3281 0.1696 -1.7330 7 6 5.7048 0.0758 -1.6749 8 6 6.2995 -1.0284 -1.0786 9 7 7.6940 -1.1292 -1.0233 10 6 8.2858 -2.3378 -1.0991 11 8 7.6180 -3.3278 -1.3110 12 6 9.7773 -2.4589 -0.9205 13 6 10.1892 -3.9265 -1.0530 14 6 11.6807 -4.0476 -0.8751 15 1 12.2754 -3.1660 -0.6860 16 6 12.2862 -5.2839 -0.9527 17 7 11.5621 -6.3574 -1.1825 18 14 14.1350 -5.4340 -0.7315 19 1 14.7149 -4.0893 -0.4856 20 1 14.4247 -6.3170 0.4268 21 1 14.7348 -6.0153 -1.9594 22 6 5.5072 -2.0326 -0.5376 23 6 4.1311 -1.9305 -0.5947 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 1.7518 -0.1584 -2.1368 33 1 3.8649 1.0261 -2.2002 34 1 6.3182 0.8584 -2.0965 35 1 8.2348 -0.3294 -0.9305 36 1 10.2837 -1.8693 -1.6848 37 1 10.0562 -2.0906 0.0667 38 1 9.6827 -4.5164 -0.2890 39 1 9.9104 -4.2944 -2.0404 40 1 11.9879 -7.2272 -1.2367 41 1 5.9668 -2.8927 -0.0736 42 1 3.5144 -2.7113 -0.1746 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127083596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:16 Heat of formation + Delta-G solvation = -44.952462 kcal Electronic energy + Delta-G solvation = -20207.626575 eV Core-core repulsion = 17151.203521 eV Total energy + Delta-G solvation = -3056.423054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29270 -38.74059 -36.43221 -34.26966 -33.51974 -31.27954 -30.90716 -30.15430 -27.39635 -26.61523 -25.26182 -22.93823 -22.32365 -21.02748 -20.12164 -19.66742 -17.52282 -16.94211 -15.96109 -15.72380 -15.32080 -15.06027 -14.52128 -14.46743 -14.25242 -14.05904 -13.41474 -13.34641 -13.07728 -12.79641 -12.45937 -12.33371 -12.20015 -12.06605 -11.78755 -11.24265 -11.16150 -11.10008 -10.97181 -10.88309 -10.81896 -10.60941 -10.02292 -9.97504 -9.71905 -9.25394 -9.08595 -8.81142 -8.35898 -7.83640 -5.99162 -4.03861 1.35404 1.48858 3.07477 3.30942 3.36159 3.39470 3.42809 3.88154 4.45085 4.59669 4.64444 4.74928 4.90200 5.03359 5.15743 5.26554 5.35999 5.36703 5.38803 5.42641 5.50060 5.58643 5.65508 5.68323 5.76274 5.82549 5.91063 6.05510 6.09551 6.12367 6.13658 6.15905 6.38651 6.47611 6.66715 6.71198 6.82215 7.17966 7.69394 7.71629 7.80406 8.02605 8.33601 8.60119 9.04375 9.60034 11.11803 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.052580 B = 0.002672 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.397396 B =10474.592318 C =10770.960314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.072 4.072 5 C -0.107 4.107 6 C -0.097 4.097 7 C -0.153 4.153 8 C 0.155 3.845 9 N -0.688 5.688 10 C 0.508 3.492 11 O -0.513 6.513 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.121 4.121 23 C -0.097 4.097 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.136 0.864 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.873 16.773 1.550 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.174 4.174 8 C 0.060 3.940 9 N -0.334 5.334 10 C 0.298 3.702 11 O -0.386 6.386 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.141 4.141 23 C -0.115 4.115 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.243 0.757 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.153 0.847 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.253 15.806 1.388 24.949 hybrid contribution 1.363 0.248 0.101 1.389 sum -17.891 16.054 1.489 24.083 Atomic orbital electron populations 1.21856 0.95293 1.01690 1.01646 1.21097 0.95217 0.96556 0.98214 1.21912 1.01811 0.95695 1.01276 1.20614 0.91244 1.01010 0.98043 1.19744 0.95368 0.95089 1.00543 1.20733 0.92667 0.98412 0.99788 1.20862 0.95205 0.99124 1.02188 1.17867 0.83528 0.95820 0.96740 1.43971 1.04602 1.10654 1.74125 1.21829 0.92211 0.81669 0.74489 1.90685 1.66089 1.36600 1.45195 1.21913 0.87542 1.04793 1.02653 1.18922 0.95667 0.86931 0.98623 1.21237 0.92546 0.93215 1.49584 0.92487 1.25033 0.98203 0.95935 0.95250 1.70003 1.35308 0.98484 1.48974 0.86522 0.85544 0.78085 0.77732 1.19738 1.20993 1.20991 1.21226 0.93341 0.99613 0.99924 1.20897 0.94152 0.97365 0.99132 0.92751 0.92701 0.92772 0.91083 0.93072 0.91983 0.92904 0.91184 0.91281 0.86180 0.86006 0.75690 0.89918 0.89787 0.95728 0.95722 0.92952 0.84665 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.09 -0.72 2.91 -90.62 -0.26 -0.98 16 3 C -0.15 -1.12 8.77 37.16 0.33 -0.80 16 4 C -0.07 -0.62 4.84 -27.88 -0.13 -0.76 16 5 C -0.11 -1.19 4.71 -104.59 -0.49 -1.68 16 6 C -0.10 -1.05 7.97 -39.61 -0.32 -1.37 16 7 C -0.15 -1.83 9.96 -39.39 -0.39 -2.22 16 8 C 0.16 2.28 6.28 -83.69 -0.53 1.75 16 9 N -0.69 -10.06 5.34 -9.86 -0.05 -10.11 16 10 C 0.51 9.69 7.57 -10.98 -0.08 9.61 16 11 O -0.51 -11.86 13.67 5.56 0.08 -11.78 16 12 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 13 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 14 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.12 -1.88 8.66 -39.39 -0.34 -2.22 16 23 C -0.10 -1.26 9.69 -39.61 -0.38 -1.64 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.52 6.28 -51.93 -0.33 0.20 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.12 1.03 8.05 -52.49 -0.42 0.60 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.41 4.46 8.82 -40.82 -0.36 4.10 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.72 8.10 -51.94 -0.42 0.29 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.14 2.41 6.41 -52.49 -0.34 2.07 16 42 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -33.18 347.40 -8.87 -42.05 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.89 Total: 1.01 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.95 Total: -16.38 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.68 Total: -36.68 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.18 -8.87 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127083596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.899 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds