Wall clock time and date at job start Mon Mar 30 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38167 * 120.03230 * 2 1 4 4 C 1.38237 * 120.05858 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.94667 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47090 * 89.99850 * 5 4 3 7 7 C 1.46851 * 111.00089 * 294.21492 * 6 5 4 8 8 C 1.53031 * 109.52181 * 174.16107 * 7 6 5 9 9 C 1.53122 * 109.28328 * 59.17685 * 8 7 6 10 10 C 1.53113 * 109.15931 * 302.34845 * 9 8 7 11 11 H 1.09009 * 109.50156 * 297.71048 * 10 9 8 12 12 C 1.50698 * 109.50466 * 177.59455 * 10 9 8 13 13 H 1.07999 * 119.99790 * 240.19732 * 12 10 9 14 14 C 1.37871 * 120.00389 * 60.18887 * 12 10 9 15 15 N 1.31519 * 119.99636 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00490 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46641 * 90.00432 * 16 14 12 18 18 H 1.48493 * 109.47424 * 210.00223 * 16 14 12 19 19 H 1.48499 * 109.47090 * 330.00574 * 16 14 12 20 20 C 1.46848 * 110.99943 * 170.00456 * 6 5 4 21 21 C 1.38289 * 120.11494 * 359.74537 * 4 3 2 22 22 C 1.38125 * 120.05202 * 0.50894 * 21 4 3 23 23 C 1.38709 * 120.03025 * 179.97438 * 2 1 3 24 24 O 1.35906 * 120.05198 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47146 * 270.02582 * 1 2 3 26 26 H 1.09006 * 109.47104 * 30.02426 * 1 2 3 27 27 H 1.08997 * 109.47215 * 150.02537 * 1 2 3 28 28 H 1.08006 * 119.96903 * 359.94962 * 3 2 1 29 29 H 1.08993 * 109.47243 * 210.00317 * 5 4 3 30 30 H 1.09001 * 109.46983 * 330.00266 * 5 4 3 31 31 H 1.09000 * 109.46069 * 294.17519 * 7 6 5 32 32 H 1.08997 * 109.46355 * 54.13946 * 7 6 5 33 33 H 1.09002 * 109.50613 * 299.23146 * 8 7 6 34 34 H 1.09001 * 109.53502 * 179.14129 * 8 7 6 35 35 H 1.09000 * 109.52331 * 182.43811 * 9 8 7 36 36 H 1.09001 * 109.56756 * 62.27923 * 9 8 7 37 37 H 0.96999 * 119.99862 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.45901 * 305.85189 * 20 6 5 39 39 H 1.08999 * 109.46187 * 65.82527 * 20 6 5 40 40 H 1.07995 * 119.98087 * 180.27524 * 21 4 3 41 41 H 1.08002 * 120.03152 * 179.77429 * 22 21 4 42 42 H 0.96696 * 114.00369 * 270.02003 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1968 0.0005 5 6 4.3325 2.5030 -0.0001 6 7 4.5762 2.9283 1.3847 7 6 3.3153 3.2450 2.0676 8 6 3.5933 3.5422 3.5428 9 6 4.5624 4.7232 3.6469 10 6 5.8482 4.3866 2.8867 11 1 6.3274 3.5225 3.3470 12 6 6.7842 5.5666 2.9342 13 1 7.1028 6.0404 2.0174 14 6 7.2339 6.0416 4.1479 15 7 6.8463 5.4645 5.2643 16 14 8.3937 7.5048 4.2067 17 1 7.6037 8.7595 4.2896 18 1 9.2716 7.3930 5.3991 19 1 9.2276 7.5252 2.9781 20 6 5.5048 4.0650 1.4304 21 6 4.2752 0.0009 0.0064 22 6 3.5887 -1.1976 0.0011 23 6 2.2011 -1.2009 0.0005 24 8 1.5233 -2.3788 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6584 2.1315 -0.0008 29 1 5.2852 2.3737 -0.5134 30 1 3.7425 3.2615 -0.5146 31 1 2.8589 4.1180 1.6010 32 1 2.6368 2.3955 1.9898 33 1 4.0370 2.6648 4.0135 34 1 2.6595 3.7922 4.0465 35 1 4.7970 4.9107 4.6947 36 1 4.1038 5.6111 3.2117 37 1 7.1629 5.7984 6.1182 38 1 6.4166 3.8109 0.8900 39 1 5.0382 4.9341 0.9669 40 1 5.3551 0.0039 0.0113 41 1 4.1313 -2.1314 0.0020 42 1 1.3265 -2.7194 0.8839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140579011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:51 Heat of formation + Delta-G solvation = -49.979380 kcal Electronic energy + Delta-G solvation = -21283.277895 eV Core-core repulsion = 18226.636858 eV Total energy + Delta-G solvation = -3056.641037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01971 -39.70524 -37.70873 -35.56999 -33.96364 -33.29542 -31.81381 -30.92671 -27.95360 -26.89094 -26.67252 -23.75526 -23.22782 -23.06966 -21.30823 -20.34006 -19.18435 -18.42061 -16.99808 -16.86917 -16.70011 -16.29966 -15.98614 -15.49085 -15.05649 -14.81598 -14.60529 -14.44213 -14.05264 -14.03441 -13.94017 -13.44825 -13.17468 -13.09229 -12.83991 -12.71020 -12.64137 -12.48002 -12.43821 -12.04515 -11.81385 -11.71071 -11.37489 -11.29144 -10.86702 -10.66431 -10.36960 -9.70858 -9.36884 -9.08202 -8.07113 -6.21338 0.28704 0.43050 1.41878 1.42596 1.52790 2.43019 2.60564 3.19932 3.28099 3.39050 3.84180 3.88080 3.99881 4.20262 4.23972 4.36773 4.39370 4.43050 4.60504 4.65098 4.68753 4.76627 4.80444 4.82024 4.89692 4.92298 4.98571 5.07655 5.11001 5.18764 5.29421 5.38724 5.41658 5.52298 5.57003 5.64316 5.71831 5.94016 5.97977 6.13183 6.21833 6.34088 6.46756 6.88682 6.91540 7.46623 8.97554 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037382 B = 0.003647 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.848681 B = 7675.872702 C = 7870.941505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.084 4.084 5 C 0.094 3.906 6 N -0.542 5.542 7 C 0.067 3.933 8 C -0.110 4.110 9 C -0.103 4.103 10 C 0.053 3.947 11 H -0.004 1.004 12 C -0.536 4.536 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.082 3.918 21 C -0.099 4.099 22 C -0.148 4.148 23 C 0.093 3.907 24 O -0.504 6.504 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.017 0.983 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 -11.713 -9.850 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.085 4.085 5 C -0.033 4.033 6 N -0.266 5.266 7 C -0.061 4.061 8 C -0.148 4.148 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.014 0.986 12 C -0.575 4.575 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.780 3.220 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.046 4.046 21 C -0.117 4.117 22 C -0.167 4.167 23 C 0.048 3.952 24 O -0.317 6.317 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -11.705 -12.031 -10.024 19.551 hybrid contribution 0.581 1.475 0.535 1.673 sum -11.124 -10.556 -9.490 18.034 Atomic orbital electron populations 1.20692 0.89188 1.03455 1.03062 1.20416 0.97851 0.92195 1.01599 1.20991 0.93280 0.97878 1.00263 1.19807 0.93763 0.94765 1.00122 1.21049 0.99738 0.93222 0.89341 1.61947 1.12964 1.36848 1.14868 1.22058 0.90818 0.99103 0.94111 1.21575 0.98900 0.98368 0.95927 1.21456 0.95533 0.95195 1.01954 1.18584 0.92968 0.94296 0.90755 0.98594 1.21528 1.28123 1.15299 0.92501 0.92947 1.25721 0.97840 0.99501 0.95427 1.70044 1.45522 1.42158 0.97796 0.85617 0.78993 0.79751 0.77651 1.20178 1.20968 1.19241 1.22001 0.94443 0.89667 0.98467 1.21034 1.00489 0.91386 0.98834 1.21556 0.93766 0.99046 1.02300 1.18369 0.89892 0.85288 1.01604 1.84725 1.76293 1.35505 1.35176 0.90305 0.90821 0.90833 0.85152 0.89776 0.93760 0.95493 0.89763 0.93468 0.91354 0.92478 0.95816 0.93106 0.92244 0.96439 0.85288 0.84225 0.73537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.79 71.23 0.70 -1.03 16 2 C -0.12 -2.59 5.89 -19.77 -0.12 -2.71 16 3 C -0.11 -2.49 7.52 22.25 0.17 -2.32 16 4 C -0.08 -2.20 4.89 -19.85 -0.10 -2.30 16 5 C 0.09 2.70 5.12 85.56 0.44 3.14 16 6 N -0.54 -19.48 4.65 -900.94 -4.19 -23.67 16 7 C 0.07 2.26 5.15 86.32 0.44 2.71 16 8 C -0.11 -4.30 6.09 30.65 0.19 -4.11 16 9 C -0.10 -5.00 5.03 30.67 0.15 -4.84 16 10 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 11 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 12 C -0.54 -29.88 8.56 25.60 0.22 -29.66 16 13 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 14 C 0.01 0.77 5.30 84.65 0.45 1.22 16 15 N -0.92 -53.57 11.36 21.45 0.24 -53.33 16 16 Si 0.95 43.86 29.54 68.60 2.03 45.88 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C 0.08 3.45 4.68 86.33 0.40 3.85 16 21 C -0.10 -2.48 9.69 22.25 0.22 -2.26 16 22 C -0.15 -3.35 9.99 22.37 0.22 -3.12 16 23 C 0.09 2.03 6.68 22.51 0.15 2.18 16 24 O -0.50 -9.06 12.55 -92.49 -1.16 -10.22 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.07 8.09 -2.38 -0.02 1.05 16 27 H 0.07 1.15 7.53 -2.39 -0.02 1.13 16 28 H 0.13 2.78 7.95 -2.91 -0.02 2.76 16 29 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 30 H 0.04 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 2.51 5.75 -2.39 -0.01 2.50 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 3.13 6.17 -2.39 -0.01 3.12 16 36 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.06 2.47 8.02 -2.39 -0.02 2.45 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.41 3.66 9.06 -74.06 -0.67 2.99 16 Total: -1.00 -64.21 333.79 0.76 -63.45 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.33 Total: 14.46 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 3.51 Total: -36.58 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -3.94 Total: -77.00 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.16 Total: -10.22 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.21 0.76 -63.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140579011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.475 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds