Wall clock time and date at job start Mon Mar 30 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38161 * 120.03220 * 2 1 4 4 C 1.38239 * 120.05758 * 179.79486 * 3 2 1 5 5 C 1.50701 * 119.94722 * 180.20906 * 4 3 2 6 6 N 1.46897 * 109.47357 * 270.25333 * 5 4 3 7 7 C 1.46853 * 111.00129 * 45.78244 * 6 5 4 8 8 C 1.53032 * 109.52479 * 185.84379 * 7 6 5 9 9 C 1.53122 * 109.27999 * 300.82069 * 8 7 6 10 10 C 1.53127 * 109.15684 * 57.65740 * 9 8 7 11 11 H 1.08992 * 109.53809 * 62.30315 * 10 9 8 12 12 C 1.50697 * 109.50342 * 182.40586 * 10 9 8 13 13 H 1.07998 * 120.00291 * 119.79696 * 12 10 9 14 14 C 1.37883 * 119.99987 * 299.80623 * 12 10 9 15 15 N 1.31508 * 120.00079 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99810 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.46635 * 90.00535 * 16 14 12 18 18 H 1.48496 * 109.47298 * 210.00569 * 16 14 12 19 19 H 1.48501 * 109.47260 * 330.00731 * 16 14 12 20 20 C 1.46837 * 111.00419 * 169.99651 * 6 5 4 21 21 C 1.38286 * 120.11316 * 0.45640 * 4 3 2 22 22 C 1.38128 * 120.05182 * 359.79826 * 21 4 3 23 23 C 1.38714 * 120.02409 * 180.27709 * 2 1 3 24 24 O 1.35896 * 120.05520 * 359.94956 * 23 2 1 25 25 H 1.08999 * 109.47015 * 269.72805 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.71957 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.72675 * 1 2 3 28 28 H 1.08004 * 119.96835 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46873 * 30.25008 * 5 4 3 30 30 H 1.08997 * 109.47328 * 150.24732 * 5 4 3 31 31 H 1.08999 * 109.46177 * 305.86072 * 7 6 5 32 32 H 1.09004 * 109.45884 * 65.82888 * 7 6 5 33 33 H 1.09002 * 109.50387 * 180.88539 * 8 7 6 34 34 H 1.08993 * 109.50444 * 60.76401 * 8 7 6 35 35 H 1.08996 * 109.52571 * 297.75682 * 9 8 7 36 36 H 1.08999 * 109.57403 * 177.58814 * 9 8 7 37 37 H 0.97006 * 120.00365 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.46514 * 294.17754 * 20 6 5 39 39 H 1.09004 * 109.46194 * 54.14263 * 20 6 5 40 40 H 1.07996 * 119.97482 * 179.77185 * 21 4 3 41 41 H 1.07998 * 120.02481 * 179.97438 * 22 21 4 42 42 H 0.96702 * 113.99852 * 90.00897 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1967 0.0043 5 6 4.3326 2.5029 0.0090 6 7 4.5759 2.9329 -1.3743 7 6 3.3616 2.7972 -2.1889 8 6 3.6879 3.1138 -3.6502 9 6 4.2339 4.5410 -3.7484 10 6 5.4699 4.6688 -2.8535 11 1 6.2473 3.9915 -3.2068 12 6 5.9791 6.0864 -2.8985 13 1 6.0284 6.6715 -1.9920 14 6 6.3819 6.6366 -4.0969 15 7 6.8268 7.8736 -4.1360 16 14 6.2971 5.6245 -5.6646 17 1 4.9719 5.8166 -6.3066 18 1 7.3668 6.0639 -6.5961 19 1 6.4850 4.1882 -5.3374 20 6 5.0918 4.3071 -1.4153 21 6 4.2753 0.0008 -0.0009 22 6 3.5886 -1.1977 -0.0063 23 6 2.2011 -1.2010 -0.0058 24 8 1.5233 -2.3788 -0.0105 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6585 2.1315 0.0004 29 1 3.7428 3.2596 0.5264 30 1 5.2855 2.3718 0.5217 31 1 2.9859 1.7767 -2.1136 32 1 2.6025 3.4911 -1.8277 33 1 2.7830 3.0283 -4.2519 34 1 4.4368 2.4116 -4.0162 35 1 3.4712 5.2464 -3.4189 36 1 4.5081 4.7568 -4.7811 37 1 7.1106 8.2605 -4.9791 38 1 4.3248 4.9939 -1.0577 39 1 5.9729 4.3833 -0.7781 40 1 5.3552 0.0039 -0.0013 41 1 4.1313 -2.1314 -0.0108 42 1 1.3266 -2.7159 -0.8952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140579012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:55 Heat of formation + Delta-G solvation = -22.199651 kcal Electronic energy + Delta-G solvation = -21462.095833 eV Core-core repulsion = 18406.659415 eV Total energy + Delta-G solvation = -3055.436418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23464 -38.53511 -36.81753 -34.04358 -32.82841 -32.08930 -30.50397 -29.89694 -27.19357 -25.75438 -24.90469 -22.68975 -22.21415 -21.54031 -20.14723 -18.85240 -18.44482 -16.72312 -16.15316 -15.84064 -15.75837 -15.12286 -14.34941 -14.17119 -13.93502 -13.67449 -13.47304 -13.36530 -13.19655 -12.86148 -12.52771 -12.39242 -12.21492 -12.15374 -11.80214 -11.53970 -11.20709 -11.04469 -10.96915 -10.54686 -10.47258 -10.07024 -9.94531 -9.68179 -9.11747 -8.93926 -8.83620 -8.53360 -8.49575 -7.79013 -6.06228 -4.05310 1.11532 1.25485 3.29189 3.40476 3.44054 3.46047 4.08206 4.43410 4.48379 4.68449 4.71608 4.80723 5.14778 5.25551 5.29215 5.40369 5.43977 5.49411 5.53212 5.59608 5.67089 5.72320 5.83459 5.93094 6.00149 6.03498 6.16405 6.22397 6.28970 6.33592 6.37645 6.47394 6.59688 6.62194 6.72303 6.81524 6.85055 7.20731 7.40964 7.48202 7.58138 7.65977 7.87207 8.52850 8.96912 9.56715 11.07025 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.004021 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.921883 B = 6962.353389 C = 7107.306641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.113 4.113 3 C -0.099 4.099 4 C -0.075 4.075 5 C 0.091 3.909 6 N -0.535 5.535 7 C 0.059 3.941 8 C -0.119 4.119 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.036 0.964 12 C -0.514 4.514 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.903 5.903 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.076 3.924 21 C -0.089 4.089 22 C -0.142 4.142 23 C 0.094 3.906 24 O -0.498 6.498 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 -17.723 6.901 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.076 4.076 5 C -0.037 4.037 6 N -0.260 5.260 7 C -0.068 4.068 8 C -0.157 4.157 9 C -0.160 4.160 10 C 0.001 3.999 11 H 0.054 0.946 12 C -0.552 4.552 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.050 4.050 21 C -0.108 4.108 22 C -0.160 4.160 23 C 0.050 3.950 24 O -0.308 6.308 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.352 -17.811 7.209 21.826 hybrid contribution -0.676 0.098 -1.142 1.331 sum -11.028 -17.713 6.067 21.730 Atomic orbital electron populations 1.20635 0.90829 1.02496 1.02375 1.20144 0.96558 0.92491 1.02160 1.20895 0.93608 0.97204 1.00077 1.19895 0.93337 0.95437 0.98915 1.21098 0.99084 0.92112 0.91361 1.62170 1.29805 1.25880 1.08109 1.22113 0.90792 0.99897 0.94042 1.21655 1.00059 0.99037 0.94979 1.22026 0.99863 0.93970 1.00125 1.19156 0.93144 0.97294 0.90262 0.94636 1.21004 1.42330 0.96073 0.95842 0.90962 1.24980 0.94487 0.94679 0.98934 1.69898 1.43840 1.13762 1.26593 0.86827 0.76685 0.81381 0.83277 1.20745 1.22625 1.18812 1.22117 0.98187 0.84682 1.00033 1.20933 1.00243 0.91005 0.98625 1.21378 0.93354 0.98815 1.02482 1.18266 0.89815 0.84668 1.02295 1.84818 1.76611 1.36178 1.33199 0.91221 0.91612 0.91606 0.85888 0.94220 0.89919 0.91299 0.95631 0.92949 0.91916 0.92614 0.93583 0.92697 0.95479 0.91379 0.85303 0.85594 0.75925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.79 36.01 0.35 -0.60 16 2 C -0.11 -1.26 5.89 -104.47 -0.62 -1.88 16 3 C -0.10 -1.18 7.41 -39.61 -0.29 -1.48 16 4 C -0.08 -0.96 4.14 -104.60 -0.43 -1.39 16 5 C 0.09 1.27 5.43 -4.98 -0.03 1.25 16 6 N -0.53 -9.13 4.80 -236.12 -1.13 -10.27 16 7 C 0.06 0.96 4.57 -3.83 -0.02 0.95 16 8 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 9 C -0.12 -2.65 4.74 -26.60 -0.13 -2.78 16 10 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 11 H 0.04 0.88 7.19 -51.93 -0.37 0.51 16 12 C -0.51 -14.35 9.14 -34.44 -0.31 -14.67 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 15 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 16 Si 0.89 22.16 24.36 -169.99 -4.14 18.02 16 17 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 18 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 19 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 20 C 0.08 1.53 4.65 -3.84 -0.02 1.51 16 21 C -0.09 -1.07 9.69 -39.60 -0.38 -1.45 16 22 C -0.14 -1.57 9.99 -39.43 -0.39 -1.97 16 23 C 0.09 1.05 6.68 -39.22 -0.26 0.79 16 24 O -0.50 -4.76 12.55 -19.41 -0.24 -5.01 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.52 7.53 -51.93 -0.39 0.12 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 30 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.07 1.03 5.63 -51.93 -0.29 0.74 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.06 3.37 -51.93 -0.17 0.88 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 40 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.39 1.98 9.06 45.56 0.41 2.39 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -31.37 326.13 -8.69 -40.06 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.90 Total: 0.93 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.96 Total: -21.76 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.36 Total: -37.16 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.24 Total: -5.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.37 -8.69 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140579012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.862 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds