Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38161 * 120.03220 * 2 1 4 4 C 1.38239 * 120.05758 * 179.79486 * 3 2 1 5 5 C 1.50701 * 119.94722 * 180.20906 * 4 3 2 6 6 N 1.46897 * 109.47357 * 270.25333 * 5 4 3 7 7 C 1.46853 * 111.00129 * 45.78244 * 6 5 4 8 8 C 1.53032 * 109.52479 * 185.84379 * 7 6 5 9 9 C 1.53122 * 109.27999 * 300.82069 * 8 7 6 10 10 C 1.53127 * 109.15684 * 57.65740 * 9 8 7 11 11 H 1.08992 * 109.53809 * 62.30315 * 10 9 8 12 12 C 1.50697 * 109.50342 * 182.40586 * 10 9 8 13 13 H 1.07998 * 120.00291 * 119.79696 * 12 10 9 14 14 C 1.37883 * 119.99987 * 299.80623 * 12 10 9 15 15 N 1.31508 * 120.00079 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99810 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.46635 * 90.00535 * 16 14 12 18 18 H 1.48496 * 109.47298 * 210.00569 * 16 14 12 19 19 H 1.48501 * 109.47260 * 330.00731 * 16 14 12 20 20 C 1.46837 * 111.00419 * 169.99651 * 6 5 4 21 21 C 1.38286 * 120.11316 * 0.45640 * 4 3 2 22 22 C 1.38128 * 120.05182 * 359.79826 * 21 4 3 23 23 C 1.38714 * 120.02409 * 180.27709 * 2 1 3 24 24 O 1.35896 * 120.05520 * 359.94956 * 23 2 1 25 25 H 1.08999 * 109.47015 * 269.72805 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.71957 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.72675 * 1 2 3 28 28 H 1.08004 * 119.96835 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46873 * 30.25008 * 5 4 3 30 30 H 1.08997 * 109.47328 * 150.24732 * 5 4 3 31 31 H 1.08999 * 109.46177 * 305.86072 * 7 6 5 32 32 H 1.09004 * 109.45884 * 65.82888 * 7 6 5 33 33 H 1.09002 * 109.50387 * 180.88539 * 8 7 6 34 34 H 1.08993 * 109.50444 * 60.76401 * 8 7 6 35 35 H 1.08996 * 109.52571 * 297.75682 * 9 8 7 36 36 H 1.08999 * 109.57403 * 177.58814 * 9 8 7 37 37 H 0.97006 * 120.00365 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.46514 * 294.17754 * 20 6 5 39 39 H 1.09004 * 109.46194 * 54.14263 * 20 6 5 40 40 H 1.07996 * 119.97482 * 179.77185 * 21 4 3 41 41 H 1.07998 * 120.02481 * 179.97438 * 22 21 4 42 42 H 0.96702 * 113.99852 * 90.00897 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1967 0.0043 5 6 4.3326 2.5029 0.0090 6 7 4.5759 2.9329 -1.3743 7 6 3.3616 2.7972 -2.1889 8 6 3.6879 3.1138 -3.6502 9 6 4.2339 4.5410 -3.7484 10 6 5.4699 4.6688 -2.8535 11 1 6.2473 3.9915 -3.2068 12 6 5.9791 6.0864 -2.8985 13 1 6.0284 6.6715 -1.9920 14 6 6.3819 6.6366 -4.0969 15 7 6.8268 7.8736 -4.1360 16 14 6.2971 5.6245 -5.6646 17 1 4.9719 5.8166 -6.3066 18 1 7.3668 6.0639 -6.5961 19 1 6.4850 4.1882 -5.3374 20 6 5.0918 4.3071 -1.4153 21 6 4.2753 0.0008 -0.0009 22 6 3.5886 -1.1977 -0.0063 23 6 2.2011 -1.2010 -0.0058 24 8 1.5233 -2.3788 -0.0105 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6585 2.1315 0.0004 29 1 3.7428 3.2596 0.5264 30 1 5.2855 2.3718 0.5217 31 1 2.9859 1.7767 -2.1136 32 1 2.6025 3.4911 -1.8277 33 1 2.7830 3.0283 -4.2519 34 1 4.4368 2.4116 -4.0162 35 1 3.4712 5.2464 -3.4189 36 1 4.5081 4.7568 -4.7811 37 1 7.1106 8.2605 -4.9791 38 1 4.3248 4.9939 -1.0577 39 1 5.9729 4.3833 -0.7781 40 1 5.3552 0.0039 -0.0013 41 1 4.1313 -2.1314 -0.0108 42 1 1.3266 -2.7159 -0.8952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140579012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = -43.754345 kcal Electronic energy + Delta-G solvation = -21463.030514 eV Core-core repulsion = 18406.659415 eV Total energy + Delta-G solvation = -3056.371099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14764 -39.83534 -37.77403 -35.59310 -34.14303 -33.45234 -32.05820 -31.13684 -28.03226 -26.88338 -26.81156 -23.99059 -23.14772 -23.06596 -21.27574 -20.44386 -19.21190 -18.82420 -17.30588 -17.01906 -16.68961 -16.16805 -16.10524 -15.42065 -15.28423 -14.99522 -14.80515 -14.69592 -14.18478 -14.02356 -13.92639 -13.76814 -13.32816 -13.14808 -12.92841 -12.79006 -12.72004 -12.53442 -12.25676 -12.00497 -11.87523 -11.73987 -11.43079 -11.30734 -11.00645 -10.80927 -10.61270 -9.71584 -9.43979 -9.09408 -8.30100 -6.33504 0.25530 0.41096 1.30162 1.36714 1.47868 2.33193 2.58001 3.05881 3.20398 3.36012 3.75964 3.87352 3.97871 4.02984 4.12293 4.26224 4.35059 4.38632 4.44340 4.60501 4.62909 4.70853 4.78469 4.79613 4.80280 4.81177 4.89361 4.95443 5.04065 5.07454 5.14835 5.22631 5.28736 5.39340 5.44422 5.55437 5.63666 5.68689 5.73114 5.92399 6.16107 6.24378 6.35296 6.73910 6.88043 7.32301 8.86757 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.004021 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.921883 B = 6962.353389 C = 7107.306641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.089 4.089 5 C 0.094 3.906 6 N -0.539 5.539 7 C 0.063 3.937 8 C -0.114 4.114 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.025 0.975 12 C -0.519 4.519 13 H 0.033 0.967 14 C 0.014 3.986 15 N -0.951 5.951 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.299 1.299 19 H -0.248 1.248 20 C 0.088 3.912 21 C -0.096 4.096 22 C -0.147 4.147 23 C 0.095 3.905 24 O -0.504 6.504 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 -20.669 6.407 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.090 4.090 5 C -0.033 4.033 6 N -0.264 5.264 7 C -0.064 4.064 8 C -0.152 4.152 9 C -0.159 4.159 10 C 0.001 3.999 11 H 0.043 0.957 12 C -0.557 4.557 13 H 0.052 0.948 14 C -0.183 4.183 15 N -0.591 5.591 16 Si 0.778 3.222 17 H -0.193 1.193 18 H -0.227 1.227 19 H -0.172 1.172 20 C -0.040 4.040 21 C -0.114 4.114 22 C -0.165 4.165 23 C 0.051 3.949 24 O -0.317 6.317 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -12.067 -20.789 6.721 24.959 hybrid contribution -0.169 0.986 -0.873 1.327 sum -12.236 -19.803 5.849 24.002 Atomic orbital electron populations 1.20677 0.89348 1.03436 1.02797 1.20384 0.97738 0.92199 1.01693 1.20976 0.93333 0.97817 1.00170 1.19775 0.93668 0.94782 1.00757 1.21091 0.99747 0.93014 0.89474 1.62094 1.30731 1.23290 1.10286 1.22122 0.90359 1.01098 0.92828 1.21635 1.01060 0.95897 0.96623 1.21920 0.98674 0.96731 0.98590 1.19067 0.93762 0.93971 0.93070 0.95671 1.21335 1.41900 0.98073 0.94426 0.94818 1.25830 0.94242 0.95678 1.02575 1.70045 1.45646 1.15787 1.27626 0.85804 0.77123 0.80366 0.78917 1.19305 1.22731 1.17243 1.21808 0.97969 0.86604 0.97592 1.21046 1.00637 0.91112 0.98632 1.21568 0.93633 0.99138 1.02151 1.18390 0.89970 0.85199 1.01369 1.84766 1.76332 1.35505 1.35105 0.90997 0.90931 0.90462 0.85549 0.94095 0.89480 0.89281 0.95349 0.90147 0.92026 0.93290 0.94721 0.92570 0.96357 0.91968 0.84849 0.84071 0.73507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.79 71.24 0.70 -0.88 16 2 C -0.12 -2.34 5.89 -19.77 -0.12 -2.45 16 3 C -0.10 -2.25 7.41 22.25 0.16 -2.08 16 4 C -0.09 -2.10 4.14 -19.85 -0.08 -2.18 16 5 C 0.09 2.50 5.43 85.56 0.46 2.97 16 6 N -0.54 -17.64 4.80 -900.93 -4.32 -21.96 16 7 C 0.06 1.90 4.57 86.32 0.39 2.29 16 8 C -0.11 -3.76 6.09 30.65 0.19 -3.57 16 9 C -0.12 -5.10 4.74 30.68 0.15 -4.96 16 10 C 0.02 0.96 1.85 -11.48 -0.02 0.94 16 11 H 0.03 1.24 7.19 -2.39 -0.02 1.22 16 12 C -0.52 -29.87 9.14 25.60 0.23 -29.64 16 13 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 14 C 0.01 0.80 5.45 84.66 0.46 1.26 16 15 N -0.95 -60.05 13.96 21.45 0.30 -59.76 16 16 Si 0.95 45.82 24.36 68.60 1.67 47.49 16 17 H -0.27 -12.21 6.89 99.48 0.69 -11.53 16 18 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 20 C 0.09 3.52 4.65 86.33 0.40 3.92 16 21 C -0.10 -2.08 9.69 22.25 0.22 -1.86 16 22 C -0.15 -2.87 9.99 22.37 0.22 -2.64 16 23 C 0.10 1.85 6.68 22.51 0.15 2.00 16 24 O -0.50 -8.02 12.55 -92.38 -1.16 -9.18 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 0.97 8.08 -2.39 -0.02 0.96 16 27 H 0.08 0.96 7.53 -2.39 -0.02 0.94 16 28 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.04 1.08 8.02 -2.38 -0.02 1.07 16 30 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 31 H 0.09 2.37 5.63 -2.39 -0.01 2.35 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.03 1.52 3.37 -2.39 -0.01 1.52 16 37 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 2.51 8.12 -2.38 -0.02 2.50 16 40 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.41 2.74 9.06 -74.06 -0.67 2.07 16 Total: -1.00 -68.18 326.13 0.26 -67.92 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.26 Total: 12.37 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.52 Total: -36.89 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -4.02 Total: -81.72 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -68.18 0.26 -67.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140579012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.161 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds