Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.53002 * 109.47645 * 294.99642 * 4 2 1 6 6 H 1.08999 * 109.46436 * 55.00109 * 5 4 2 7 7 N 1.46494 * 109.47031 * 295.00754 * 5 4 2 8 8 C 1.34777 * 120.00266 * 84.99616 * 7 5 4 9 9 O 1.21282 * 120.00100 * 359.97438 * 8 7 5 10 10 C 1.50704 * 119.99876 * 179.97438 * 8 7 5 11 11 C 1.50695 * 109.47049 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00045 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00062 * 180.02562 * 11 10 8 14 14 N 1.31514 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47225 * 59.99232 * 15 13 11 17 17 H 1.48494 * 109.47124 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46879 * 299.99629 * 15 13 11 19 19 C 1.50697 * 109.47440 * 174.99944 * 5 4 2 20 20 C 1.38240 * 119.99403 * 79.72866 * 19 5 4 21 21 C 1.38241 * 119.99301 * 179.81008 * 20 19 5 22 22 C 1.38226 * 120.00338 * 0.40026 * 21 20 19 23 23 C 1.38240 * 120.00062 * 359.85519 * 22 21 20 24 24 C 1.38234 * 120.00109 * 260.00671 * 19 5 4 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 32 32 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 33 33 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 34 34 H 0.97006 * 120.00051 * 264.99504 * 7 5 4 35 35 H 1.09002 * 109.47199 * 300.00119 * 10 8 7 36 36 H 1.08993 * 109.47077 * 59.99694 * 10 8 7 37 37 H 0.97004 * 119.99425 * 180.02562 * 14 13 11 38 38 H 1.07991 * 120.00280 * 0.02562 * 20 19 5 39 39 H 1.08001 * 119.99579 * 180.23357 * 21 20 19 40 40 H 1.08001 * 120.00089 * 179.83596 * 22 21 20 41 41 H 1.07998 * 120.00267 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00366 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6352 -2.1955 -1.1881 6 1 0.5563 -2.2707 -1.0528 7 7 2.3147 -2.8421 -0.0627 8 6 1.7815 -2.7779 1.1734 9 8 0.7393 -2.1844 1.3542 10 6 2.4802 -3.4435 2.3309 11 6 1.6834 -3.2255 3.5913 12 1 0.7633 -2.6610 3.5576 13 6 2.1296 -3.7458 4.7876 14 7 3.2503 -4.4328 4.8287 15 14 1.1415 -3.4762 6.3498 16 1 -0.2129 -4.0626 6.1863 17 1 1.8301 -4.1319 7.4904 18 1 1.0216 -2.0198 6.6145 19 6 2.0292 -2.8784 -2.4724 20 6 3.3383 -3.2762 -2.6702 21 6 3.6989 -3.9061 -3.8467 22 6 2.7523 -4.1308 -4.8286 23 6 1.4444 -3.7283 -4.6329 24 6 1.0829 -3.1018 -3.4549 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6053 -0.2617 -2.1370 33 1 3.1263 -0.6444 -1.2952 34 1 3.1484 -3.3164 -0.2072 35 1 2.5671 -4.5126 2.1368 36 1 3.4748 -3.0141 2.4505 37 1 3.5639 -4.7991 5.6704 38 1 4.0784 -3.0979 -1.9043 39 1 4.7208 -4.2203 -3.9997 40 1 3.0346 -4.6206 -5.7489 41 1 0.7049 -3.9035 -5.4003 42 1 0.0611 -2.7874 -3.3020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = -33.996337 kcal Electronic energy + Delta-G solvation = -21497.850452 eV Core-core repulsion = 18441.902492 eV Total energy + Delta-G solvation = -3055.947960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01033 -38.52866 -36.07410 -33.98753 -32.88338 -31.32385 -30.86503 -28.98731 -27.76772 -26.71087 -24.25512 -23.25598 -22.64098 -20.81910 -19.51445 -19.45404 -17.16159 -16.40624 -15.81776 -15.66632 -15.22277 -15.00371 -14.45665 -14.30395 -13.83565 -13.68456 -13.45051 -13.14385 -12.79545 -12.77039 -12.27072 -12.02443 -11.95943 -11.78057 -11.47395 -11.20786 -11.14299 -10.99964 -10.78516 -10.60571 -10.45579 -10.21136 -10.02308 -9.87937 -9.25519 -8.98648 -8.87665 -8.45504 -8.42028 -8.32741 -6.03345 -4.02482 1.27742 1.33543 3.38506 3.40793 3.45920 3.67074 3.77322 4.00343 4.51038 4.63311 4.83050 4.91705 5.04479 5.24780 5.29768 5.34447 5.35336 5.43638 5.51289 5.59978 5.82931 5.85554 5.92163 5.98212 6.02073 6.12166 6.15832 6.25921 6.30871 6.38809 6.42338 6.44509 6.60518 6.61746 6.88545 6.92132 6.98858 7.14175 7.23873 7.36004 7.98524 8.09632 8.47530 9.08112 9.29755 9.62520 11.09082 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.004824 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.969369 B = 5802.947826 C = 6734.541405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.114 4.114 5 C 0.180 3.820 6 H 0.095 0.905 7 N -0.742 5.742 8 C 0.514 3.486 9 O -0.533 6.533 10 C 0.005 3.995 11 C -0.505 4.505 12 H 0.075 0.925 13 C 0.054 3.946 14 N -0.902 5.902 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.081 4.081 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.261 0.739 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 3.963 -18.502 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.153 4.153 5 C 0.075 3.925 6 H 0.113 0.887 7 N -0.397 5.397 8 C 0.304 3.696 9 O -0.409 6.409 10 C -0.034 4.034 11 C -0.543 4.543 12 H 0.093 0.907 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.082 4.082 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.129 4.129 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.156 4.306 -18.208 18.711 hybrid contribution 0.105 -0.198 0.703 0.738 sum -0.051 4.108 -17.505 17.981 Atomic orbital electron populations 1.21805 0.95045 1.02921 0.99465 1.21193 0.96590 0.94926 0.98891 1.21845 1.00347 0.96993 1.00989 1.22025 1.00744 0.94141 0.98399 1.19840 0.98747 0.91111 0.82785 0.88745 1.46478 1.27554 1.57873 1.07803 1.21934 0.85414 0.78854 0.83364 1.90529 1.23731 1.42457 1.84144 1.19226 0.96992 0.96704 0.90501 1.21115 1.08525 1.33722 0.90985 0.90674 1.25001 0.95184 0.95181 0.99247 1.69954 1.21339 1.36189 1.26665 0.86510 0.80105 0.78462 0.82079 1.20181 1.21436 1.20168 1.20105 0.93856 0.98277 0.95913 1.21007 0.95819 0.98697 0.97580 1.21131 0.99508 0.99034 0.93881 1.21128 0.93534 1.00607 0.99196 1.21114 0.96363 0.98873 0.97385 1.21036 0.99261 0.99063 0.93587 0.93468 0.94905 0.90655 0.89340 0.92935 0.93347 0.93567 0.91913 0.92115 0.77222 0.93695 0.93703 0.92926 0.85911 0.86077 0.86323 0.86165 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.04 37.16 0.30 -1.88 16 2 C -0.10 -1.56 2.38 -90.62 -0.22 -1.77 16 3 C -0.14 -1.99 9.19 37.16 0.34 -1.65 16 4 C -0.11 -1.58 4.33 -26.73 -0.12 -1.70 16 5 C 0.18 2.64 2.37 -69.09 -0.16 2.47 16 6 H 0.09 1.54 5.78 -51.93 -0.30 1.24 16 7 N -0.74 -12.41 4.98 -54.94 -0.27 -12.69 16 8 C 0.51 11.08 6.38 -10.98 -0.07 11.01 16 9 O -0.53 -12.55 10.42 5.56 0.06 -12.49 16 10 C 0.01 0.13 5.46 -29.04 -0.16 -0.03 16 11 C -0.50 -14.41 8.92 -34.44 -0.31 -14.72 16 12 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 15 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.08 -1.03 4.95 -104.62 -0.52 -1.55 16 20 C -0.11 -1.31 9.05 -39.58 -0.36 -1.67 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.13 -1.24 10.05 -39.59 -0.40 -1.63 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.35 4.76 -51.93 -0.25 1.10 16 28 H 0.09 1.74 5.19 -51.93 -0.27 1.47 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.39 5.84 6.89 -40.82 -0.28 5.55 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 38 H 0.12 1.32 6.93 -52.49 -0.36 0.96 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.28 8.04 -52.49 -0.42 0.86 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -30.81 335.99 -8.82 -39.63 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.45 Total: 5.59 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.94 Total: -16.55 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.46 Total: -38.37 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.81 -8.82 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.636 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds