Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.53002 * 109.47645 * 294.99642 * 4 2 1 6 6 H 1.08999 * 109.46436 * 55.00109 * 5 4 2 7 7 N 1.46494 * 109.47031 * 295.00754 * 5 4 2 8 8 C 1.34777 * 120.00266 * 84.99616 * 7 5 4 9 9 O 1.21282 * 120.00100 * 359.97438 * 8 7 5 10 10 C 1.50704 * 119.99876 * 179.97438 * 8 7 5 11 11 C 1.50695 * 109.47049 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00045 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00062 * 180.02562 * 11 10 8 14 14 N 1.31514 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47225 * 59.99232 * 15 13 11 17 17 H 1.48494 * 109.47124 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46879 * 299.99629 * 15 13 11 19 19 C 1.50697 * 109.47440 * 174.99944 * 5 4 2 20 20 C 1.38240 * 119.99403 * 79.72866 * 19 5 4 21 21 C 1.38241 * 119.99301 * 179.81008 * 20 19 5 22 22 C 1.38226 * 120.00338 * 0.40026 * 21 20 19 23 23 C 1.38240 * 120.00062 * 359.85519 * 22 21 20 24 24 C 1.38234 * 120.00109 * 260.00671 * 19 5 4 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 32 32 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 33 33 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 34 34 H 0.97006 * 120.00051 * 264.99504 * 7 5 4 35 35 H 1.09002 * 109.47199 * 300.00119 * 10 8 7 36 36 H 1.08993 * 109.47077 * 59.99694 * 10 8 7 37 37 H 0.97004 * 119.99425 * 180.02562 * 14 13 11 38 38 H 1.07991 * 120.00280 * 0.02562 * 20 19 5 39 39 H 1.08001 * 119.99579 * 180.23357 * 21 20 19 40 40 H 1.08001 * 120.00089 * 179.83596 * 22 21 20 41 41 H 1.07998 * 120.00267 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00366 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6352 -2.1955 -1.1881 6 1 0.5563 -2.2707 -1.0528 7 7 2.3147 -2.8421 -0.0627 8 6 1.7815 -2.7779 1.1734 9 8 0.7393 -2.1844 1.3542 10 6 2.4802 -3.4435 2.3309 11 6 1.6834 -3.2255 3.5913 12 1 0.7633 -2.6610 3.5576 13 6 2.1296 -3.7458 4.7876 14 7 3.2503 -4.4328 4.8287 15 14 1.1415 -3.4762 6.3498 16 1 -0.2129 -4.0626 6.1863 17 1 1.8301 -4.1319 7.4904 18 1 1.0216 -2.0198 6.6145 19 6 2.0292 -2.8784 -2.4724 20 6 3.3383 -3.2762 -2.6702 21 6 3.6989 -3.9061 -3.8467 22 6 2.7523 -4.1308 -4.8286 23 6 1.4444 -3.7283 -4.6329 24 6 1.0829 -3.1018 -3.4549 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6053 -0.2617 -2.1370 33 1 3.1263 -0.6444 -1.2952 34 1 3.1484 -3.3164 -0.2072 35 1 2.5671 -4.5126 2.1368 36 1 3.4748 -3.0141 2.4505 37 1 3.5639 -4.7991 5.6704 38 1 4.0784 -3.0979 -1.9043 39 1 4.7208 -4.2203 -3.9997 40 1 3.0346 -4.6206 -5.7489 41 1 0.7049 -3.9035 -5.4003 42 1 0.0611 -2.7874 -3.3020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = -50.978085 kcal Electronic energy + Delta-G solvation = -21498.586836 eV Core-core repulsion = 18441.902492 eV Total energy + Delta-G solvation = -3056.684344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25595 -39.74414 -37.41807 -35.30510 -35.04401 -32.52473 -31.74115 -30.76873 -29.04428 -27.94585 -25.93519 -24.65533 -23.55966 -21.89026 -21.02418 -20.76404 -18.49793 -18.25436 -17.26400 -16.92486 -16.74550 -16.29817 -15.92171 -15.38555 -15.26062 -14.94655 -14.53643 -14.38375 -14.24550 -14.06169 -13.75460 -13.39849 -13.17395 -13.06581 -12.93693 -12.73647 -12.60467 -12.48148 -12.15703 -12.00029 -11.88318 -11.68883 -11.42821 -11.40745 -11.25500 -10.60586 -10.33327 -9.89377 -9.79192 -9.56247 -8.23261 -6.29581 0.42547 0.52272 1.39904 1.42505 1.50995 2.01728 2.36010 2.55944 2.93137 3.12515 3.58469 3.96594 4.08111 4.12367 4.18178 4.20508 4.33154 4.35704 4.54195 4.62540 4.67331 4.72675 4.83653 4.87353 4.88713 5.00386 5.07545 5.08865 5.12851 5.17689 5.19818 5.29336 5.39569 5.54982 5.57211 5.61453 5.64811 5.69648 5.73470 5.85024 6.09250 6.13201 6.75666 6.89280 7.37157 7.63841 8.88906 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.004824 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.969369 B = 5802.947826 C = 6734.541405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.105 4.105 5 C 0.185 3.815 6 H 0.077 0.923 7 N -0.724 5.724 8 C 0.519 3.481 9 O -0.556 6.556 10 C 0.008 3.992 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.273 1.273 19 C -0.098 4.098 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 4.159 -20.504 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 C -0.197 4.197 4 C -0.144 4.144 5 C 0.080 3.920 6 H 0.095 0.905 7 N -0.378 5.378 8 C 0.308 3.692 9 O -0.434 6.434 10 C -0.032 4.032 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.098 4.098 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.141 4.141 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.083 4.496 -20.247 20.741 hybrid contribution 0.064 -0.293 1.228 1.264 sum 0.147 4.203 -19.019 19.479 Atomic orbital electron populations 1.21721 0.95369 1.01594 0.99944 1.21142 0.96354 0.96234 0.98135 1.21793 1.00702 0.95461 1.01718 1.21948 1.01173 0.93228 0.98024 1.19870 0.97428 0.91898 0.82774 0.90542 1.46192 1.27555 1.57057 1.06982 1.21222 0.85018 0.78760 0.84214 1.90524 1.24639 1.43463 1.84760 1.19049 0.96472 0.96286 0.91344 1.21334 1.08496 1.33963 0.92897 0.92373 1.25776 0.96184 0.94754 1.02245 1.70037 1.22400 1.36613 1.27636 0.85550 0.78768 0.78512 0.78492 1.19815 1.20095 1.19803 1.19931 0.94826 0.99862 0.95193 1.21129 0.95439 0.99222 0.98497 1.21431 1.00841 0.98351 0.93327 1.21518 0.93173 0.99645 0.99940 1.21429 0.97277 0.97954 0.97248 1.21202 0.99363 0.99499 0.94055 0.95059 0.92182 0.92875 0.93541 0.93697 0.92751 0.91324 0.89807 0.91414 0.76042 0.94811 0.94646 0.92557 0.85701 0.83980 0.83635 0.83801 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.04 71.98 0.58 -3.63 16 2 C -0.10 -3.19 2.38 -10.79 -0.03 -3.22 16 3 C -0.14 -3.70 9.19 71.98 0.66 -3.03 16 4 C -0.11 -2.80 4.33 30.59 0.13 -2.67 16 5 C 0.18 5.37 2.37 44.25 0.10 5.47 16 6 H 0.08 2.53 5.78 -2.39 -0.01 2.52 16 7 N -0.72 -24.70 4.98 -446.11 -2.22 -26.92 16 8 C 0.52 23.28 6.38 87.66 0.56 23.84 16 9 O -0.56 -27.38 10.42 -3.04 -0.03 -27.41 16 10 C 0.01 0.42 5.46 29.10 0.16 0.58 16 11 C -0.53 -31.17 8.92 25.60 0.23 -30.95 16 12 H 0.06 3.57 6.75 -2.91 -0.02 3.55 16 13 C 0.01 0.50 5.46 84.65 0.46 0.96 16 14 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 15 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 19 C -0.10 -2.36 4.95 -19.87 -0.10 -2.46 16 20 C -0.12 -2.70 9.05 22.27 0.20 -2.50 16 21 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 22 C -0.12 -2.03 10.05 22.27 0.22 -1.80 16 23 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 24 C -0.12 -2.64 9.67 22.27 0.22 -2.42 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.96 4.76 -2.39 -0.01 1.95 16 28 H 0.05 1.89 5.19 -2.39 -0.01 1.88 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.40 12.10 6.89 -92.70 -0.64 11.46 16 35 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.13 2.55 6.93 -2.92 -0.02 2.53 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.13 2.51 8.04 -2.91 -0.02 2.48 16 Total: -1.00 -67.57 335.99 4.28 -63.29 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.37 Total: 23.53 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 3.85 Total: -25.68 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.94 Total: -81.61 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.03 Total: -27.41 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -67.57 4.28 -63.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.312 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds