Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47024 * 2 1 4 4 C 1.53008 * 109.47017 * 240.00321 * 2 1 3 5 5 C 1.53003 * 109.46927 * 294.62759 * 4 2 1 6 6 H 1.08997 * 109.47021 * 54.46786 * 5 4 2 7 7 N 1.46495 * 109.46865 * 174.47212 * 5 4 2 8 8 C 1.34773 * 119.99984 * 272.01120 * 7 5 4 9 9 O 1.21288 * 120.00243 * 4.67396 * 8 7 5 10 10 C 1.50703 * 120.00248 * 184.67964 * 8 7 5 11 11 C 1.50696 * 109.47523 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99896 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00344 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00307 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46850 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47050 * 119.99924 * 15 13 11 18 18 H 1.48506 * 109.47185 * 240.00251 * 15 13 11 19 19 C 1.50706 * 109.46876 * 294.47140 * 5 4 2 20 20 C 1.38238 * 119.99498 * 279.72575 * 19 5 4 21 21 C 1.38233 * 119.99337 * 179.78966 * 20 19 5 22 22 C 1.38234 * 120.00349 * 0.44198 * 21 20 19 23 23 C 1.38240 * 120.00067 * 359.81415 * 22 21 20 24 24 C 1.38229 * 119.99764 * 100.00383 * 19 5 4 25 25 H 1.09004 * 109.47097 * 55.98712 * 1 2 3 26 26 H 1.09004 * 109.47218 * 175.98946 * 1 2 3 27 27 H 1.09000 * 109.46893 * 295.98778 * 1 2 3 28 28 H 1.08995 * 109.47120 * 120.00230 * 2 1 3 29 29 H 1.09002 * 109.46844 * 60.00645 * 3 2 1 30 30 H 1.09000 * 109.46963 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47360 * 300.00083 * 3 2 1 32 32 H 1.09002 * 109.46960 * 54.62600 * 4 2 1 33 33 H 1.08999 * 109.47002 * 174.62677 * 4 2 1 34 34 H 0.97003 * 120.00337 * 92.00685 * 7 5 4 35 35 H 1.09001 * 109.46677 * 299.99717 * 10 8 7 36 36 H 1.09000 * 109.47167 * 59.99759 * 10 8 7 37 37 H 0.97000 * 120.00370 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.00182 * 0.02562 * 20 19 5 39 39 H 1.08005 * 119.99955 * 180.27636 * 21 20 19 40 40 H 1.07998 * 120.00445 * 179.82977 * 22 21 20 41 41 H 1.07996 * 120.00458 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00487 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6432 -2.1974 -1.1837 6 1 0.5664 -2.2780 -1.0355 7 7 2.0146 -2.8591 -2.4368 8 6 1.1553 -2.8670 -3.4751 9 8 0.1107 -2.2551 -3.4024 10 6 1.4923 -3.6365 -4.7263 11 6 0.3749 -3.4844 -5.7259 12 1 -0.4928 -2.8903 -5.4796 13 6 0.4602 -4.1036 -6.9548 14 7 1.5166 -4.8274 -7.2545 15 14 -0.9252 -3.9156 -8.1936 16 1 -1.9922 -3.0589 -7.6167 17 1 -0.4000 -3.2865 -9.4319 18 1 -1.4852 -5.2525 -8.5167 19 6 2.3593 -2.8594 -0.0346 20 6 3.6744 -3.2604 -0.1788 21 6 4.3325 -3.8636 0.8766 22 6 3.6729 -4.0741 2.0730 23 6 2.3561 -3.6779 2.2154 24 6 1.6993 -3.0707 1.1614 25 1 -0.3633 0.5749 -0.8519 26 1 -0.3634 -1.0252 -0.0719 27 1 -0.3633 0.4503 0.9238 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6002 -0.2659 -2.1367 33 1 3.1257 -0.6386 -1.2988 34 1 2.8790 -3.2914 -2.5194 35 1 2.4173 -3.2488 -5.1531 36 1 1.6191 -4.6910 -4.4813 37 1 1.5768 -5.2627 -8.1193 38 1 4.1887 -3.0989 -1.1146 39 1 5.3613 -4.1729 0.7655 40 1 4.1862 -4.5479 2.8966 41 1 1.8406 -3.8428 3.1499 42 1 0.6706 -2.7612 1.2726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -40.151672 kcal Electronic energy + Delta-G solvation = -21233.589431 eV Core-core repulsion = 18177.374555 eV Total energy + Delta-G solvation = -3056.214876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01147 -38.34687 -36.58339 -34.05611 -32.89721 -31.23625 -30.86420 -29.06524 -27.82205 -27.12209 -24.26339 -23.22282 -22.63311 -21.09579 -19.74708 -19.36097 -17.18069 -16.38807 -15.87652 -15.56418 -15.23907 -15.03626 -14.45961 -14.33357 -14.29973 -13.63068 -13.44608 -13.36902 -13.03746 -12.74164 -12.33365 -12.16205 -12.08804 -12.00517 -11.68138 -11.22591 -11.14210 -11.02247 -10.88748 -10.71947 -10.61218 -10.54000 -10.35218 -9.93274 -9.23167 -8.96808 -8.87769 -8.56514 -8.44884 -8.36835 -6.03933 -4.03121 1.29054 1.34373 3.34628 3.41597 3.50004 3.66483 3.76171 3.96121 4.50807 4.65648 4.82454 4.92532 4.97500 5.01105 5.02302 5.09500 5.34511 5.41389 5.44327 5.51406 5.64311 5.69274 5.76304 5.82935 5.87876 5.95310 5.98294 6.06563 6.11513 6.24280 6.33645 6.37479 6.40768 6.44954 6.53518 6.63889 6.93772 7.09975 7.22579 7.35486 7.98082 8.08102 8.46416 9.08251 9.26042 9.62014 11.08581 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.004434 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.690090 B = 6312.810533 C = 7239.029468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.119 4.119 5 C 0.181 3.819 6 H 0.095 0.905 7 N -0.744 5.744 8 C 0.516 3.484 9 O -0.543 6.543 10 C 0.004 3.996 11 C -0.505 4.505 12 H 0.076 0.924 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.900 3.100 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.077 4.077 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.260 0.740 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 5.266 19.314 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.076 3.924 6 H 0.113 0.887 7 N -0.398 5.398 8 C 0.306 3.694 9 O -0.419 6.419 10 C -0.035 4.035 11 C -0.544 4.544 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.728 3.272 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.078 4.078 20 C -0.132 4.132 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.180 5.591 19.192 20.650 hybrid contribution -0.096 -0.275 -0.733 0.788 sum 5.084 5.317 18.459 19.871 Atomic orbital electron populations 1.21900 0.95135 1.02196 1.01378 1.21092 0.96038 0.95939 0.98268 1.21818 1.00671 0.96183 1.01564 1.22025 1.00806 0.94355 0.98605 1.19807 0.99671 0.90945 0.82026 0.88680 1.46466 1.20855 1.59343 1.13173 1.22007 0.82661 0.79937 0.84792 1.90532 1.25600 1.43853 1.81916 1.19246 0.99536 0.95768 0.88945 1.21208 1.04337 1.30660 0.98195 0.90623 1.25008 0.96146 0.95165 0.98337 1.69970 1.28508 1.33079 1.22569 0.86393 0.82216 0.77839 0.80797 1.19479 1.21030 1.21037 1.20069 0.94417 0.98055 0.95242 1.20984 0.94333 0.98869 0.98982 1.21118 0.99885 0.99168 0.93332 1.21120 0.95033 1.00622 0.97686 1.21110 0.94969 0.98942 0.98712 1.21030 0.99905 0.99052 0.92844 0.92392 0.92353 0.93197 0.91123 0.92974 0.92965 0.92654 0.90680 0.92012 0.77151 0.93570 0.93482 0.93003 0.85996 0.86102 0.86348 0.86189 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.05 37.16 0.34 -1.44 16 2 C -0.09 -1.10 2.76 -90.62 -0.25 -1.35 16 3 C -0.14 -1.51 9.19 37.16 0.34 -1.16 16 4 C -0.12 -1.65 4.45 -26.73 -0.12 -1.76 16 5 C 0.18 2.71 2.14 -69.08 -0.15 2.56 16 6 H 0.10 1.60 5.54 -51.93 -0.29 1.31 16 7 N -0.74 -12.92 5.00 -54.93 -0.27 -13.19 16 8 C 0.52 11.71 7.81 -10.99 -0.09 11.63 16 9 O -0.54 -13.96 15.12 5.55 0.08 -13.88 16 10 C 0.00 0.11 5.46 -29.04 -0.16 -0.05 16 11 C -0.51 -14.75 8.92 -34.44 -0.31 -15.06 16 12 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 15 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.08 -0.98 4.25 -104.62 -0.44 -1.43 16 20 C -0.11 -1.33 9.09 -39.58 -0.36 -1.69 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.11 -1.27 8.61 -39.58 -0.34 -1.61 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.74 6.29 -51.93 -0.33 0.41 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.79 6.46 -51.93 -0.34 0.46 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.39 5.97 6.87 -40.82 -0.28 5.69 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.12 1.32 6.86 -52.49 -0.36 0.96 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -32.23 344.17 -8.69 -40.92 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.57 Total: 4.34 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.83 Total: -14.75 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.46 Total: -39.06 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.88 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.23 -8.69 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.767 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds