Wall clock time and date at job start Mon Mar 30 2020 02:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47024 * 2 1 4 4 C 1.53008 * 109.47017 * 240.00321 * 2 1 3 5 5 C 1.53003 * 109.46927 * 294.62759 * 4 2 1 6 6 H 1.08997 * 109.47021 * 54.46786 * 5 4 2 7 7 N 1.46495 * 109.46865 * 174.47212 * 5 4 2 8 8 C 1.34773 * 119.99984 * 272.01120 * 7 5 4 9 9 O 1.21288 * 120.00243 * 4.67396 * 8 7 5 10 10 C 1.50703 * 120.00248 * 184.67964 * 8 7 5 11 11 C 1.50696 * 109.47523 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99896 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00344 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00307 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46850 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47050 * 119.99924 * 15 13 11 18 18 H 1.48506 * 109.47185 * 240.00251 * 15 13 11 19 19 C 1.50706 * 109.46876 * 294.47140 * 5 4 2 20 20 C 1.38238 * 119.99498 * 279.72575 * 19 5 4 21 21 C 1.38233 * 119.99337 * 179.78966 * 20 19 5 22 22 C 1.38234 * 120.00349 * 0.44198 * 21 20 19 23 23 C 1.38240 * 120.00067 * 359.81415 * 22 21 20 24 24 C 1.38229 * 119.99764 * 100.00383 * 19 5 4 25 25 H 1.09004 * 109.47097 * 55.98712 * 1 2 3 26 26 H 1.09004 * 109.47218 * 175.98946 * 1 2 3 27 27 H 1.09000 * 109.46893 * 295.98778 * 1 2 3 28 28 H 1.08995 * 109.47120 * 120.00230 * 2 1 3 29 29 H 1.09002 * 109.46844 * 60.00645 * 3 2 1 30 30 H 1.09000 * 109.46963 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47360 * 300.00083 * 3 2 1 32 32 H 1.09002 * 109.46960 * 54.62600 * 4 2 1 33 33 H 1.08999 * 109.47002 * 174.62677 * 4 2 1 34 34 H 0.97003 * 120.00337 * 92.00685 * 7 5 4 35 35 H 1.09001 * 109.46677 * 299.99717 * 10 8 7 36 36 H 1.09000 * 109.47167 * 59.99759 * 10 8 7 37 37 H 0.97000 * 120.00370 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.00182 * 0.02562 * 20 19 5 39 39 H 1.08005 * 119.99955 * 180.27636 * 21 20 19 40 40 H 1.07998 * 120.00445 * 179.82977 * 22 21 20 41 41 H 1.07996 * 120.00458 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00487 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6432 -2.1974 -1.1837 6 1 0.5664 -2.2780 -1.0355 7 7 2.0146 -2.8591 -2.4368 8 6 1.1553 -2.8670 -3.4751 9 8 0.1107 -2.2551 -3.4024 10 6 1.4923 -3.6365 -4.7263 11 6 0.3749 -3.4844 -5.7259 12 1 -0.4928 -2.8903 -5.4796 13 6 0.4602 -4.1036 -6.9548 14 7 1.5166 -4.8274 -7.2545 15 14 -0.9252 -3.9156 -8.1936 16 1 -1.9922 -3.0589 -7.6167 17 1 -0.4000 -3.2865 -9.4319 18 1 -1.4852 -5.2525 -8.5167 19 6 2.3593 -2.8594 -0.0346 20 6 3.6744 -3.2604 -0.1788 21 6 4.3325 -3.8636 0.8766 22 6 3.6729 -4.0741 2.0730 23 6 2.3561 -3.6779 2.2154 24 6 1.6993 -3.0707 1.1614 25 1 -0.3633 0.5749 -0.8519 26 1 -0.3634 -1.0252 -0.0719 27 1 -0.3633 0.4503 0.9238 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6002 -0.2659 -2.1367 33 1 3.1257 -0.6386 -1.2988 34 1 2.8790 -3.2914 -2.5194 35 1 2.4173 -3.2488 -5.1531 36 1 1.6191 -4.6910 -4.4813 37 1 1.5768 -5.2627 -8.1193 38 1 4.1887 -3.0989 -1.1146 39 1 5.3613 -4.1729 0.7655 40 1 4.1862 -4.5479 2.8966 41 1 1.8406 -3.8428 3.1499 42 1 0.6706 -2.7612 1.2726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:40 Heat of formation + Delta-G solvation = -58.455062 kcal Electronic energy + Delta-G solvation = -21234.383125 eV Core-core repulsion = 18177.374555 eV Total energy + Delta-G solvation = -3057.008570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21265 -39.79063 -37.69959 -35.41182 -35.09194 -32.45101 -31.76075 -30.83607 -29.10517 -28.06378 -25.97816 -24.59497 -23.57695 -22.14457 -21.24841 -20.53923 -18.55485 -18.35315 -17.26492 -16.95698 -16.43095 -16.31438 -16.01931 -15.78439 -15.39080 -14.88992 -14.64046 -14.44815 -14.18557 -14.14004 -13.94332 -13.35380 -13.31635 -13.11136 -12.95156 -12.79565 -12.66756 -12.50813 -12.08535 -12.00378 -11.94624 -11.84570 -11.56331 -11.44571 -11.41399 -10.63642 -10.53427 -10.01339 -9.78822 -9.59464 -8.25936 -6.33110 0.42480 0.52099 1.38849 1.39418 1.54546 1.88777 2.31948 2.49903 2.92332 3.09387 3.60083 3.88673 3.99062 4.04160 4.08478 4.16671 4.28095 4.32410 4.48811 4.53774 4.65037 4.72837 4.76369 4.81220 4.89979 4.98098 5.01092 5.05811 5.08798 5.12891 5.17685 5.24543 5.27903 5.40935 5.49159 5.54098 5.59547 5.64912 5.70720 5.79873 6.04805 6.12712 6.69396 6.83371 7.33234 7.51046 8.86557 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.004434 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.690090 B = 6312.810533 C = 7239.029468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.113 4.113 5 C 0.183 3.817 6 H 0.074 0.926 7 N -0.724 5.724 8 C 0.520 3.480 9 O -0.579 6.579 10 C 0.008 3.992 11 C -0.535 4.535 12 H 0.055 0.945 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.964 3.036 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.120 4.120 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.406 0.594 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.267 0.733 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 5.068 21.081 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.152 4.152 5 C 0.079 3.921 6 H 0.092 0.908 7 N -0.377 5.377 8 C 0.309 3.691 9 O -0.458 6.458 10 C -0.032 4.032 11 C -0.573 4.573 12 H 0.073 0.927 13 C -0.189 4.189 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.200 1.200 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.138 4.138 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.243 0.757 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.133 5.385 20.990 22.521 hybrid contribution -0.311 -0.257 -1.196 1.262 sum 5.822 5.127 19.795 21.261 Atomic orbital electron populations 1.21890 0.95564 1.01289 1.01759 1.21048 0.95608 0.96687 0.97250 1.21803 1.01161 0.95083 1.01961 1.21951 1.01178 0.93519 0.98532 1.19867 0.98896 0.91829 0.81511 0.90841 1.46198 1.20279 1.58328 1.12918 1.21434 0.82801 0.79575 0.85255 1.90510 1.27241 1.45433 1.82654 1.19080 0.98338 0.95720 0.90026 1.21390 1.04859 1.31226 0.99809 0.92680 1.25791 0.98596 0.94538 0.99941 1.70040 1.29849 1.33264 1.23344 0.85408 0.79032 0.78206 0.78463 1.19988 1.19675 1.19734 1.19844 0.95009 0.99746 0.94751 1.21109 0.94021 0.99424 0.99860 1.21416 1.00932 0.98393 0.93015 1.21514 0.94901 0.99533 0.98191 1.21420 0.95325 0.97940 0.99083 1.21155 1.00230 0.99509 0.92955 0.94121 0.93639 0.90931 0.89986 0.91258 0.92183 0.93596 0.93942 0.90984 0.75699 0.94072 0.94241 0.92398 0.85769 0.83922 0.83575 0.83777 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.05 71.98 0.65 -2.90 16 2 C -0.09 -1.97 2.76 -10.79 -0.03 -2.00 16 3 C -0.14 -2.78 9.19 71.98 0.66 -2.12 16 4 C -0.11 -3.18 4.45 30.60 0.14 -3.05 16 5 C 0.18 5.61 2.14 44.25 0.09 5.71 16 6 H 0.07 2.60 5.54 -2.39 -0.01 2.58 16 7 N -0.72 -25.85 5.00 -446.09 -2.23 -28.08 16 8 C 0.52 24.61 7.81 87.66 0.68 25.30 16 9 O -0.58 -31.26 15.12 -3.05 -0.05 -31.31 16 10 C 0.01 0.41 5.46 29.10 0.16 0.57 16 11 C -0.53 -32.17 8.92 25.60 0.23 -31.94 16 12 H 0.05 3.49 6.75 -2.91 -0.02 3.47 16 13 C 0.01 0.57 5.46 84.65 0.46 1.03 16 14 N -0.92 -54.86 13.29 21.45 0.28 -54.57 16 15 Si 0.96 46.00 29.54 68.60 2.03 48.03 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 C -0.09 -2.30 4.25 -19.86 -0.08 -2.38 16 20 C -0.13 -2.76 9.09 22.27 0.20 -2.55 16 21 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 22 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 24 C -0.12 -2.61 8.61 22.27 0.19 -2.41 16 25 H 0.04 1.09 8.14 -2.38 -0.02 1.08 16 26 H 0.04 1.20 6.29 -2.39 -0.02 1.18 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.71 6.46 -2.39 -0.02 1.69 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.41 12.45 6.87 -92.71 -0.64 11.81 16 35 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.12 2.55 6.86 -2.91 -0.02 2.53 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.12 2.55 8.04 -2.91 -0.02 2.53 16 Total: -1.00 -70.46 344.17 4.42 -66.04 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.36 Total: 22.17 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.03 Total: -22.27 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.95 Total: -82.65 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.05 Total: -31.31 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.46 4.42 -66.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.584 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds