Wall clock time and date at job start Mon Mar 30 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38760 * 120.02680 * 2 1 4 4 O 1.35891 * 120.05416 * 0.02562 * 3 2 1 5 5 C 1.38714 * 119.88696 * 179.97438 * 3 2 1 6 6 C 1.38161 * 119.94312 * 0.25907 * 5 3 2 7 7 C 1.38250 * 120.05761 * 359.46537 * 6 5 3 8 8 C 1.38123 * 120.03116 * 179.97438 * 2 1 3 9 9 C 1.50702 * 119.96824 * 0.02562 * 8 2 1 10 10 N 1.46893 * 109.47168 * 80.00426 * 9 8 2 11 11 C 1.46853 * 111.00294 * 66.04210 * 10 9 8 12 12 C 1.53038 * 109.52382 * 185.83941 * 11 10 9 13 13 C 1.53123 * 109.27986 * 300.82205 * 12 11 10 14 14 C 1.53123 * 109.16094 * 57.65412 * 13 12 11 15 15 H 1.08993 * 109.50201 * 62.32397 * 14 13 12 16 16 C 1.50699 * 109.50442 * 182.40490 * 14 13 12 17 17 H 1.07997 * 119.99911 * 119.99914 * 16 14 13 18 18 C 1.37874 * 119.99817 * 300.00376 * 16 14 13 19 19 N 1.31514 * 120.00293 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99800 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47331 * 59.99841 * 20 18 16 22 22 H 1.48501 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47302 * 299.99466 * 20 18 16 24 24 C 1.46846 * 111.00004 * 190.25359 * 10 9 8 25 25 H 1.09004 * 109.47102 * 89.99837 * 1 2 3 26 26 H 1.09006 * 109.47118 * 209.99747 * 1 2 3 27 27 H 1.09004 * 109.47514 * 329.99929 * 1 2 3 28 28 H 0.96704 * 114.00540 * 269.97619 * 4 3 2 29 29 H 1.08002 * 120.02359 * 179.97438 * 5 3 2 30 30 H 1.07998 * 119.97295 * 179.74769 * 6 5 3 31 31 H 1.08001 * 119.94284 * 180.25991 * 7 6 5 32 32 H 1.08997 * 109.46744 * 200.00344 * 9 8 2 33 33 H 1.09000 * 109.47389 * 319.99604 * 9 8 2 34 34 H 1.08994 * 109.45739 * 305.85866 * 11 10 9 35 35 H 1.08997 * 109.45846 * 65.82392 * 11 10 9 36 36 H 1.08992 * 109.50314 * 60.76257 * 12 11 10 37 37 H 1.08997 * 109.49743 * 180.88413 * 12 11 10 38 38 H 1.08997 * 109.52097 * 177.56002 * 13 12 11 39 39 H 1.09002 * 109.52050 * 297.68807 * 13 12 11 40 40 H 0.97001 * 119.99993 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.46399 * 294.17382 * 24 10 9 42 42 H 1.09001 * 109.46063 * 54.14577 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.2014 0.0000 4 8 1.5235 2.3792 0.0005 5 6 3.5884 1.1980 0.0005 6 6 4.2751 -0.0009 -0.0043 7 6 3.5810 -1.1965 0.0014 8 6 2.1982 -1.1958 0.0005 9 6 1.4447 -2.5009 0.0005 10 7 0.9922 -2.8051 -1.3635 11 6 2.1333 -3.0604 -2.2519 12 6 1.6348 -3.2291 -3.6890 13 6 0.6469 -4.3975 -3.7476 14 6 -0.5071 -4.1291 -2.7777 15 1 -1.0395 -3.2293 -3.0857 16 6 -1.4540 -5.3014 -2.7854 17 1 -1.6404 -5.8510 -1.8746 18 6 -2.0821 -5.6724 -3.9553 19 7 -1.8554 -5.0030 -5.0644 20 14 -3.2553 -7.1261 -3.9651 21 1 -4.3742 -6.8656 -3.0241 22 1 -3.7955 -7.3169 -5.3351 23 1 -2.5292 -8.3510 -3.5438 24 6 0.0534 -3.9343 -1.3670 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.3272 2.7205 -0.8827 29 1 4.1311 2.1318 0.0001 30 1 5.3551 -0.0041 -0.0080 31 1 4.1197 -2.1326 0.0018 32 1 2.0992 -3.2983 0.3525 33 1 0.5810 -2.4219 0.6608 34 1 2.8259 -2.2202 -2.2039 35 1 2.6435 -3.9701 -1.9353 36 1 1.1366 -2.3148 -4.0110 37 1 2.4804 -3.4342 -4.3456 38 1 0.2564 -4.4939 -4.7606 39 1 1.1554 -5.3190 -3.4640 40 1 -2.2977 -5.2638 -5.8874 41 1 0.5734 -4.8398 -1.0546 42 1 -0.7645 -3.7287 -0.6764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144118609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:05 Heat of formation + Delta-G solvation = -29.225761 kcal Electronic energy + Delta-G solvation = -21659.027889 eV Core-core repulsion = 18603.286796 eV Total energy + Delta-G solvation = -3055.741093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07342 -38.19167 -36.63248 -34.03677 -32.71459 -31.52650 -30.22762 -29.52586 -26.86406 -25.68133 -24.90159 -22.31401 -21.77788 -21.52934 -20.32037 -18.59388 -17.93972 -16.38073 -16.11028 -15.92853 -15.16217 -15.07382 -14.51941 -14.12453 -13.75342 -13.40762 -13.19820 -13.00471 -12.76567 -12.44427 -12.29226 -12.13325 -11.96547 -11.71042 -11.63548 -11.20156 -11.05807 -10.92763 -10.71500 -10.66091 -10.29179 -10.10107 -9.82399 -9.46389 -9.07017 -8.70689 -8.59514 -8.44298 -8.29236 -7.65364 -5.96815 -4.03169 1.27960 1.38272 3.32373 3.37241 3.39504 3.59795 4.25400 4.41889 4.64441 4.85683 4.93026 5.07183 5.26093 5.33214 5.37507 5.57499 5.66921 5.76309 5.83271 5.85855 5.93030 5.97845 6.06920 6.10970 6.27463 6.39232 6.40409 6.42380 6.48729 6.52647 6.71551 6.75025 6.76210 6.87230 6.97544 7.22759 7.40431 7.65739 7.67386 7.75291 7.81592 8.08910 8.18323 8.48608 9.00703 9.61129 11.09012 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.004170 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.552885 B = 6712.898641 C = 6977.787571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.082 4.082 3 C 0.096 3.904 4 O -0.499 6.499 5 C -0.148 4.148 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.055 4.055 9 C 0.089 3.911 10 N -0.529 5.529 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.110 4.110 14 C 0.057 3.943 15 H 0.034 0.966 16 C -0.516 4.516 17 H 0.052 0.948 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.067 3.933 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.387 0.613 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.260 0.740 41 H 0.019 0.981 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.037 10.262 8.086 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C 0.051 3.949 4 O -0.308 6.308 5 C -0.166 4.166 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.056 4.056 9 C -0.039 4.039 10 N -0.253 5.253 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.052 0.948 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.059 4.059 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.243 0.757 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.749 10.598 8.325 16.633 hybrid contribution -0.080 -1.454 -0.292 1.485 sum 9.669 9.144 8.033 15.544 Atomic orbital electron populations 1.20686 0.90320 1.02329 1.03182 1.20076 0.97077 0.91616 0.99491 1.18282 0.89707 0.84845 1.02030 1.84766 1.76643 1.36000 1.33439 1.21305 0.93474 0.98611 1.03257 1.20896 0.99591 0.91930 1.00903 1.21077 0.93683 0.98094 1.01036 1.19640 0.93091 0.94569 0.98308 1.21054 0.98116 0.92287 0.92440 1.62019 1.15452 1.41852 1.06001 1.22056 0.92002 0.98124 0.94374 1.21662 0.98928 1.01091 0.93720 1.21655 0.95123 0.93654 1.04422 1.18643 0.92654 0.96966 0.87943 0.94796 1.21111 1.25216 1.14169 0.94935 0.92928 1.24921 0.96589 0.96586 0.95652 1.69881 1.43095 1.40065 0.99669 0.86699 0.81387 0.83132 0.76988 1.20309 1.21330 1.20407 1.22335 0.93341 0.88655 1.01594 0.90314 0.91147 0.91890 0.75713 0.85940 0.86021 0.86218 0.94689 0.89931 0.92220 0.96068 0.92229 0.93676 0.89157 0.95230 0.93021 0.96297 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.38 36.00 0.34 -1.13 16 2 C -0.08 -1.14 5.89 -104.48 -0.62 -1.75 16 3 C 0.10 1.23 6.68 -39.21 -0.26 0.97 16 4 O -0.50 -5.71 12.55 -19.40 -0.24 -5.95 16 5 C -0.15 -1.72 9.99 -39.43 -0.39 -2.12 16 6 C -0.12 -1.30 10.04 -39.61 -0.40 -1.70 16 7 C -0.12 -1.51 8.57 -39.56 -0.34 -1.85 16 8 C -0.06 -0.78 4.58 -104.65 -0.48 -1.26 16 9 C 0.09 1.34 4.48 -4.98 -0.02 1.32 16 10 N -0.53 -9.50 4.65 -236.12 -1.10 -10.60 16 11 C 0.06 1.10 5.26 -3.83 -0.02 1.08 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C -0.11 -2.60 5.02 -26.60 -0.13 -2.73 16 14 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.52 -13.98 8.56 -34.44 -0.29 -14.28 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.18 11.35 55.43 0.63 -24.56 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.07 1.40 4.68 -3.83 -0.02 1.38 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 0.96 6.12 -51.93 -0.32 0.64 16 27 H 0.06 0.78 7.53 -51.93 -0.39 0.39 16 28 H 0.39 2.82 9.06 45.56 0.41 3.23 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.36 8.03 -52.49 -0.42 0.94 16 32 H 0.03 0.51 7.98 -51.93 -0.41 0.10 16 33 H 0.08 1.21 6.25 -51.93 -0.32 0.88 16 34 H 0.06 0.97 6.31 -51.93 -0.33 0.64 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -29.23 330.82 -9.72 -38.95 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.87 Total: 2.74 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.10 Total: -21.67 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.47 Total: -35.15 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.24 Total: -5.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.23 -9.72 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144118609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.719 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds