Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38760 * 120.02680 * 2 1 4 4 O 1.35891 * 120.05416 * 0.02562 * 3 2 1 5 5 C 1.38714 * 119.88696 * 179.97438 * 3 2 1 6 6 C 1.38161 * 119.94312 * 0.25907 * 5 3 2 7 7 C 1.38250 * 120.05761 * 359.46537 * 6 5 3 8 8 C 1.38123 * 120.03116 * 179.97438 * 2 1 3 9 9 C 1.50702 * 119.96824 * 0.02562 * 8 2 1 10 10 N 1.46893 * 109.47168 * 80.00426 * 9 8 2 11 11 C 1.46853 * 111.00294 * 66.04210 * 10 9 8 12 12 C 1.53038 * 109.52382 * 185.83941 * 11 10 9 13 13 C 1.53123 * 109.27986 * 300.82205 * 12 11 10 14 14 C 1.53123 * 109.16094 * 57.65412 * 13 12 11 15 15 H 1.08993 * 109.50201 * 62.32397 * 14 13 12 16 16 C 1.50699 * 109.50442 * 182.40490 * 14 13 12 17 17 H 1.07997 * 119.99911 * 119.99914 * 16 14 13 18 18 C 1.37874 * 119.99817 * 300.00376 * 16 14 13 19 19 N 1.31514 * 120.00293 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99800 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47331 * 59.99841 * 20 18 16 22 22 H 1.48501 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47302 * 299.99466 * 20 18 16 24 24 C 1.46846 * 111.00004 * 190.25359 * 10 9 8 25 25 H 1.09004 * 109.47102 * 89.99837 * 1 2 3 26 26 H 1.09006 * 109.47118 * 209.99747 * 1 2 3 27 27 H 1.09004 * 109.47514 * 329.99929 * 1 2 3 28 28 H 0.96704 * 114.00540 * 269.97619 * 4 3 2 29 29 H 1.08002 * 120.02359 * 179.97438 * 5 3 2 30 30 H 1.07998 * 119.97295 * 179.74769 * 6 5 3 31 31 H 1.08001 * 119.94284 * 180.25991 * 7 6 5 32 32 H 1.08997 * 109.46744 * 200.00344 * 9 8 2 33 33 H 1.09000 * 109.47389 * 319.99604 * 9 8 2 34 34 H 1.08994 * 109.45739 * 305.85866 * 11 10 9 35 35 H 1.08997 * 109.45846 * 65.82392 * 11 10 9 36 36 H 1.08992 * 109.50314 * 60.76257 * 12 11 10 37 37 H 1.08997 * 109.49743 * 180.88413 * 12 11 10 38 38 H 1.08997 * 109.52097 * 177.56002 * 13 12 11 39 39 H 1.09002 * 109.52050 * 297.68807 * 13 12 11 40 40 H 0.97001 * 119.99993 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.46399 * 294.17382 * 24 10 9 42 42 H 1.09001 * 109.46063 * 54.14577 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.2014 0.0000 4 8 1.5235 2.3792 0.0005 5 6 3.5884 1.1980 0.0005 6 6 4.2751 -0.0009 -0.0043 7 6 3.5810 -1.1965 0.0014 8 6 2.1982 -1.1958 0.0005 9 6 1.4447 -2.5009 0.0005 10 7 0.9922 -2.8051 -1.3635 11 6 2.1333 -3.0604 -2.2519 12 6 1.6348 -3.2291 -3.6890 13 6 0.6469 -4.3975 -3.7476 14 6 -0.5071 -4.1291 -2.7777 15 1 -1.0395 -3.2293 -3.0857 16 6 -1.4540 -5.3014 -2.7854 17 1 -1.6404 -5.8510 -1.8746 18 6 -2.0821 -5.6724 -3.9553 19 7 -1.8554 -5.0030 -5.0644 20 14 -3.2553 -7.1261 -3.9651 21 1 -4.3742 -6.8656 -3.0241 22 1 -3.7955 -7.3169 -5.3351 23 1 -2.5292 -8.3510 -3.5438 24 6 0.0534 -3.9343 -1.3670 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.3272 2.7205 -0.8827 29 1 4.1311 2.1318 0.0001 30 1 5.3551 -0.0041 -0.0080 31 1 4.1197 -2.1326 0.0018 32 1 2.0992 -3.2983 0.3525 33 1 0.5810 -2.4219 0.6608 34 1 2.8259 -2.2202 -2.2039 35 1 2.6435 -3.9701 -1.9353 36 1 1.1366 -2.3148 -4.0110 37 1 2.4804 -3.4342 -4.3456 38 1 0.2564 -4.4939 -4.7606 39 1 1.1554 -5.3190 -3.4640 40 1 -2.2977 -5.2638 -5.8874 41 1 0.5734 -4.8398 -1.0546 42 1 -0.7645 -3.7287 -0.6764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144118609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -47.185041 kcal Electronic energy + Delta-G solvation = -21659.806662 eV Core-core repulsion = 18603.286796 eV Total energy + Delta-G solvation = -3056.519866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08115 -39.62920 -37.66374 -35.63731 -34.15970 -32.94734 -31.78041 -30.89681 -27.91892 -26.94759 -26.81879 -23.78320 -23.19041 -22.78032 -21.46197 -20.32647 -18.90182 -18.36512 -17.15004 -16.85091 -16.74801 -16.38045 -16.02924 -15.53204 -15.10792 -14.85530 -14.50052 -14.46429 -14.05787 -13.97495 -13.57580 -13.47979 -13.28038 -12.99079 -12.82524 -12.74377 -12.64287 -12.50237 -12.19484 -12.14408 -11.82445 -11.71150 -11.40875 -11.22849 -10.84416 -10.65708 -10.36196 -9.60317 -9.38667 -9.08717 -8.06501 -6.20661 0.34515 0.43126 1.42632 1.43572 1.51145 2.43516 2.64711 3.20533 3.25662 3.39491 3.83667 3.98894 4.14342 4.21821 4.25113 4.26147 4.37423 4.43167 4.60258 4.64996 4.70477 4.76730 4.86040 4.88480 4.91497 4.93292 5.00783 5.06442 5.12376 5.19414 5.38126 5.39538 5.49785 5.52540 5.56641 5.64636 5.74436 5.96407 5.99573 6.13970 6.22725 6.35153 6.47554 6.89154 6.92039 7.47251 8.97818 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.004170 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.552885 B = 6712.898641 C = 6977.787571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.103 4.103 3 C 0.089 3.911 4 O -0.507 6.507 5 C -0.149 4.149 6 C -0.109 4.109 7 C -0.126 4.126 8 C -0.070 4.070 9 C 0.092 3.908 10 N -0.536 5.536 11 C 0.070 3.930 12 C -0.109 4.109 13 C -0.103 4.103 14 C 0.055 3.945 15 H -0.004 1.004 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.015 3.985 19 N -0.915 5.915 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.082 3.918 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.405 0.595 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.022 0.978 40 H 0.260 0.740 41 H 0.016 0.984 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.762 10.697 9.077 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C 0.045 3.955 4 O -0.319 6.319 5 C -0.167 4.167 6 C -0.127 4.127 7 C -0.145 4.145 8 C -0.071 4.071 9 C -0.034 4.034 10 N -0.260 5.260 11 C -0.058 4.058 12 C -0.147 4.147 13 C -0.141 4.141 14 C 0.036 3.964 15 H 0.014 0.986 16 C -0.575 4.575 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.045 4.045 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.263 0.737 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.478 11.047 9.319 18.456 hybrid contribution -0.598 -1.499 -0.597 1.721 sum 10.880 9.548 8.722 16.900 Atomic orbital electron populations 1.20578 0.90783 1.02314 1.02129 1.20187 0.97013 0.92379 1.00780 1.18428 0.90424 0.84800 1.01868 1.84716 1.76634 1.35454 1.35092 1.21607 0.93019 0.99849 1.02236 1.21244 1.01088 0.91163 0.99234 1.21278 0.93036 0.99359 1.00794 1.19578 0.93851 0.93735 0.99904 1.21038 0.98543 0.93428 0.90440 1.61920 1.15680 1.40244 1.08139 1.21994 0.91935 0.99251 0.92625 1.21567 0.98512 0.98588 0.96022 1.21457 0.95576 0.95073 1.02012 1.18555 0.92670 0.94486 0.90648 0.98566 1.21499 1.26017 1.14984 0.95018 0.93022 1.25693 0.98170 0.99146 0.95322 1.70030 1.43915 1.41439 1.00089 0.85701 0.79395 0.80013 0.77060 1.19690 1.21015 1.19707 1.21992 0.94026 0.89713 0.98809 0.91878 0.91840 0.91208 0.73714 0.83826 0.83088 0.84898 0.93709 0.89957 0.90061 0.95512 0.93447 0.91464 0.92472 0.95899 0.93114 0.96548 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.74 9.38 71.23 0.67 -2.07 16 2 C -0.10 -2.75 5.89 -19.77 -0.12 -2.86 16 3 C 0.09 2.13 6.68 22.51 0.15 2.28 16 4 O -0.51 -10.71 12.55 -92.33 -1.16 -11.87 16 5 C -0.15 -3.00 9.99 22.37 0.22 -2.78 16 6 C -0.11 -2.08 10.04 22.25 0.22 -1.85 16 7 C -0.13 -2.80 8.57 22.28 0.19 -2.61 16 8 C -0.07 -1.85 4.58 -19.88 -0.09 -1.94 16 9 C 0.09 2.68 4.48 85.56 0.38 3.07 16 10 N -0.54 -18.96 4.65 -900.94 -4.19 -23.14 16 11 C 0.07 2.34 5.26 86.32 0.45 2.80 16 12 C -0.11 -4.23 6.09 30.65 0.19 -4.05 16 13 C -0.10 -4.96 5.02 30.68 0.15 -4.80 16 14 C 0.06 2.81 2.26 -11.48 -0.03 2.79 16 15 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 16 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 18 C 0.02 0.86 5.30 84.65 0.45 1.31 16 19 N -0.92 -53.35 11.35 21.45 0.24 -53.11 16 20 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.08 3.44 4.68 86.33 0.40 3.84 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 1.75 6.12 -2.38 -0.01 1.74 16 27 H 0.07 1.72 7.53 -2.39 -0.02 1.70 16 28 H 0.40 5.22 9.06 -74.05 -0.67 4.55 16 29 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.13 2.55 8.03 -2.91 -0.02 2.53 16 32 H 0.04 1.22 7.98 -2.39 -0.02 1.20 16 33 H 0.08 2.36 6.25 -2.39 -0.01 2.35 16 34 H 0.08 2.43 6.31 -2.39 -0.02 2.41 16 35 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -63.53 330.82 0.73 -62.80 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.33 Total: 15.99 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 3.47 Total: -36.45 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -3.94 Total: -76.25 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.16 Total: -11.87 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.53 0.73 -62.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144118609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.615 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds