Wall clock time and date at job start Mon Mar 30 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38756 * 120.02859 * 2 1 4 4 O 1.35894 * 120.05350 * 359.97438 * 3 2 1 5 5 C 1.38709 * 119.88694 * 179.74672 * 3 2 1 6 6 C 1.38167 * 119.94255 * 0.50686 * 5 3 2 7 7 C 1.38241 * 120.05604 * 359.76328 * 6 5 3 8 8 C 1.38120 * 120.02543 * 180.27405 * 2 1 3 9 9 C 1.50701 * 119.97381 * 0.02562 * 8 2 1 10 10 N 1.46892 * 109.47032 * 80.00377 * 9 8 2 11 11 C 1.46850 * 111.00264 * 45.78842 * 10 9 8 12 12 C 1.53037 * 109.52181 * 185.84168 * 11 10 9 13 13 C 1.53122 * 109.27915 * 300.81870 * 12 11 10 14 14 C 1.50701 * 109.57623 * 177.59084 * 13 12 11 15 15 H 1.07994 * 120.00560 * 240.28490 * 14 13 12 16 16 C 1.37877 * 119.99823 * 60.28956 * 14 13 12 17 17 N 1.31518 * 120.00217 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47574 * 59.99566 * 18 16 14 20 20 H 1.48503 * 109.47311 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46758 * 299.99473 * 18 16 14 22 22 C 1.53123 * 109.15930 * 57.65634 * 13 12 11 23 23 C 1.46849 * 111.00321 * 170.00143 * 10 9 8 24 24 H 1.09002 * 109.47152 * 269.72681 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72782 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72763 * 1 2 3 27 27 H 0.96700 * 114.00336 * 89.99975 * 4 3 2 28 28 H 1.08003 * 120.02851 * 180.25443 * 5 3 2 29 29 H 1.08000 * 119.96803 * 179.74675 * 6 5 3 30 30 H 1.08002 * 119.94298 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.46689 * 200.00058 * 9 8 2 32 32 H 1.08996 * 109.46890 * 319.99950 * 9 8 2 33 33 H 1.08992 * 109.46200 * 305.85392 * 11 10 9 34 34 H 1.08998 * 109.46199 * 65.82694 * 11 10 9 35 35 H 1.09000 * 109.50117 * 180.87988 * 12 11 10 36 36 H 1.08994 * 109.54013 * 60.78042 * 12 11 10 37 37 H 1.08995 * 109.52187 * 297.74993 * 13 12 11 38 38 H 0.97003 * 120.00525 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.50284 * 182.40509 * 22 13 12 40 40 H 1.09001 * 109.53193 * 62.31117 * 22 13 12 41 41 H 1.09000 * 109.45946 * 294.17839 * 23 10 9 42 42 H 1.08996 * 109.46283 * 54.14704 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3792 -0.0005 5 6 3.5885 1.1979 0.0053 6 6 4.2752 -0.0010 0.0000 7 6 3.5810 -1.1965 -0.0057 8 6 2.1982 -1.1958 -0.0057 9 6 1.4446 -2.5009 -0.0125 10 7 0.9922 -2.7979 -1.3781 11 6 2.0711 -2.5776 -2.3497 12 6 1.5256 -2.7548 -3.7685 13 6 0.9588 -4.1692 -3.9192 14 6 0.3664 -4.3318 -5.2954 15 1 -0.6812 -4.5687 -5.4079 16 6 1.1621 -4.1782 -6.4109 17 7 2.4378 -3.8894 -6.2740 18 14 0.4278 -4.3791 -8.1168 19 1 -0.6563 -3.3829 -8.3095 20 1 1.4838 -4.1647 -9.1386 21 1 -0.1278 -5.7490 -8.2583 22 6 -0.1293 -4.3896 -2.8646 23 6 0.4641 -4.1649 -1.4720 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.3271 2.7203 0.8827 28 1 4.1313 2.1316 0.0095 29 1 5.3552 -0.0042 0.0000 30 1 4.1197 -2.1326 -0.0102 31 1 2.0992 -3.3001 0.3352 32 1 0.5810 -2.4252 0.6481 33 1 2.4624 -1.5669 -2.2347 34 1 2.8698 -3.2983 -2.1750 35 1 2.3302 -2.6065 -4.4888 36 1 0.7363 -2.0253 -3.9494 37 1 1.7565 -4.8983 -3.7776 38 1 2.9976 -3.7809 -7.0588 39 1 -0.5071 -5.4093 -2.9390 40 1 -0.9453 -3.6862 -3.0304 41 1 1.2704 -4.8782 -1.3013 42 1 -0.3116 -4.3071 -0.7196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144118637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:43 Heat of formation + Delta-G solvation = -26.921949 kcal Electronic energy + Delta-G solvation = -21760.809492 eV Core-core repulsion = 18705.168300 eV Total energy + Delta-G solvation = -3055.641192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14196 -38.20892 -36.60960 -34.14438 -32.65384 -31.36135 -29.92524 -29.59352 -27.00295 -26.26842 -24.35645 -22.11875 -21.88860 -21.58501 -20.31636 -18.53157 -17.95721 -16.38671 -16.06277 -15.90881 -15.33341 -14.97345 -14.41576 -14.26436 -13.74667 -13.44643 -13.08365 -12.92342 -12.80041 -12.36664 -12.25425 -12.21109 -11.85958 -11.81757 -11.36975 -11.25939 -11.15941 -10.89594 -10.68820 -10.49006 -10.26871 -10.16750 -9.91385 -9.37830 -8.93550 -8.71047 -8.53074 -8.43949 -8.24221 -7.69700 -5.92483 -3.97826 1.29481 1.38211 3.36005 3.40461 3.43275 3.62109 4.20044 4.48883 4.58171 4.85005 4.93490 5.08575 5.26705 5.37034 5.39124 5.62160 5.69149 5.75561 5.76067 5.84170 5.90635 5.95816 6.05744 6.15845 6.27476 6.35641 6.42934 6.44770 6.52986 6.67016 6.68619 6.72726 6.87965 6.89661 7.11772 7.21197 7.49445 7.65454 7.66250 7.72498 7.87571 8.10206 8.21624 8.53291 9.05625 9.66304 11.13643 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.004573 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.967698 B = 6120.892826 C = 6421.175923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C 0.096 3.904 4 O -0.495 6.495 5 C -0.146 4.146 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.060 4.060 9 C 0.090 3.910 10 N -0.527 5.527 11 C 0.057 3.943 12 C -0.103 4.103 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.106 4.106 23 C 0.060 3.940 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.383 0.617 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.024 0.976 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 7.690 16.383 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C 0.052 3.948 4 O -0.304 6.304 5 C -0.165 4.165 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.060 4.060 9 C -0.037 4.037 10 N -0.252 5.252 11 C -0.070 4.070 12 C -0.141 4.141 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.143 4.143 23 C -0.068 4.068 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.238 0.762 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.744 7.967 15.533 17.473 hybrid contribution 0.472 -0.512 -0.309 0.762 sum 1.217 7.456 15.224 16.995 Atomic orbital electron populations 1.20789 0.90495 1.04651 1.01541 1.20050 0.97009 0.91588 1.00006 1.18292 0.89718 0.84810 1.01991 1.84835 1.76633 1.36006 1.32958 1.21334 0.93487 0.98675 1.03016 1.20919 0.99744 0.91879 1.00480 1.21105 0.93647 0.98272 1.00582 1.19592 0.93232 0.94469 0.98749 1.21080 0.97642 0.92413 0.92587 1.62152 1.34874 1.25772 1.02418 1.22320 0.91247 0.99033 0.94387 1.21648 1.01381 0.99217 0.91886 1.18679 0.92789 0.93089 0.92470 1.21171 0.95556 1.47345 0.90809 0.92842 1.24964 0.94830 0.95227 0.98953 1.69872 1.04974 1.48830 1.29461 0.86706 0.78760 0.78564 0.84234 1.20316 1.21394 1.20395 1.21671 1.00013 0.99685 0.92976 1.22138 0.97762 0.87574 0.99293 0.92146 0.89012 0.91354 0.76177 0.85844 0.85860 0.86092 0.94611 0.90325 0.92182 0.96213 0.89093 0.93936 0.96253 0.93085 0.93202 0.92471 0.95770 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.04 36.01 0.33 -1.20 16 2 C -0.09 -1.20 5.89 -104.47 -0.62 -1.82 16 3 C 0.10 1.28 6.68 -39.22 -0.26 1.02 16 4 O -0.50 -5.82 12.55 -19.41 -0.24 -6.06 16 5 C -0.15 -1.81 9.99 -39.43 -0.39 -2.20 16 6 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 7 C -0.12 -1.58 8.64 -39.56 -0.34 -1.92 16 8 C -0.06 -0.86 3.68 -104.65 -0.39 -1.24 16 9 C 0.09 1.31 4.53 -4.98 -0.02 1.28 16 10 N -0.53 -9.34 4.14 -236.13 -0.98 -10.32 16 11 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 12 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 13 C 0.05 1.22 2.16 -91.64 -0.20 1.02 16 14 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 17 N -0.89 -25.87 11.37 55.43 0.63 -25.24 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 23 C 0.06 1.07 5.42 -3.84 -0.02 1.05 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 26 H 0.07 0.90 7.52 -51.93 -0.39 0.50 16 27 H 0.38 2.52 9.06 45.56 0.41 2.93 16 28 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.51 8.03 -52.49 -0.42 1.09 16 31 H 0.04 0.50 7.94 -51.93 -0.41 0.09 16 32 H 0.08 1.02 7.28 -51.93 -0.38 0.64 16 33 H 0.06 1.21 6.03 -51.93 -0.31 0.89 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -30.44 329.78 -9.56 -40.00 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.92 Total: 2.59 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.00 Total: -22.56 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.35 Total: -35.55 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.24 Total: -6.06 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.44 -9.56 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144118637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.076 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds