Wall clock time and date at job start Mon Mar 30 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38756 * 120.02859 * 2 1 4 4 O 1.35894 * 120.05350 * 359.97438 * 3 2 1 5 5 C 1.38709 * 119.88694 * 179.74672 * 3 2 1 6 6 C 1.38167 * 119.94255 * 0.50686 * 5 3 2 7 7 C 1.38241 * 120.05604 * 359.76328 * 6 5 3 8 8 C 1.38120 * 120.02543 * 180.27405 * 2 1 3 9 9 C 1.50701 * 119.97381 * 0.02562 * 8 2 1 10 10 N 1.46892 * 109.47032 * 80.00377 * 9 8 2 11 11 C 1.46850 * 111.00264 * 45.78842 * 10 9 8 12 12 C 1.53037 * 109.52181 * 185.84168 * 11 10 9 13 13 C 1.53122 * 109.27915 * 300.81870 * 12 11 10 14 14 C 1.50701 * 109.57623 * 177.59084 * 13 12 11 15 15 H 1.07994 * 120.00560 * 240.28490 * 14 13 12 16 16 C 1.37877 * 119.99823 * 60.28956 * 14 13 12 17 17 N 1.31518 * 120.00217 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47574 * 59.99566 * 18 16 14 20 20 H 1.48503 * 109.47311 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46758 * 299.99473 * 18 16 14 22 22 C 1.53123 * 109.15930 * 57.65634 * 13 12 11 23 23 C 1.46849 * 111.00321 * 170.00143 * 10 9 8 24 24 H 1.09002 * 109.47152 * 269.72681 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72782 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72763 * 1 2 3 27 27 H 0.96700 * 114.00336 * 89.99975 * 4 3 2 28 28 H 1.08003 * 120.02851 * 180.25443 * 5 3 2 29 29 H 1.08000 * 119.96803 * 179.74675 * 6 5 3 30 30 H 1.08002 * 119.94298 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.46689 * 200.00058 * 9 8 2 32 32 H 1.08996 * 109.46890 * 319.99950 * 9 8 2 33 33 H 1.08992 * 109.46200 * 305.85392 * 11 10 9 34 34 H 1.08998 * 109.46199 * 65.82694 * 11 10 9 35 35 H 1.09000 * 109.50117 * 180.87988 * 12 11 10 36 36 H 1.08994 * 109.54013 * 60.78042 * 12 11 10 37 37 H 1.08995 * 109.52187 * 297.74993 * 13 12 11 38 38 H 0.97003 * 120.00525 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.50284 * 182.40509 * 22 13 12 40 40 H 1.09001 * 109.53193 * 62.31117 * 22 13 12 41 41 H 1.09000 * 109.45946 * 294.17839 * 23 10 9 42 42 H 1.08996 * 109.46283 * 54.14704 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3792 -0.0005 5 6 3.5885 1.1979 0.0053 6 6 4.2752 -0.0010 0.0000 7 6 3.5810 -1.1965 -0.0057 8 6 2.1982 -1.1958 -0.0057 9 6 1.4446 -2.5009 -0.0125 10 7 0.9922 -2.7979 -1.3781 11 6 2.0711 -2.5776 -2.3497 12 6 1.5256 -2.7548 -3.7685 13 6 0.9588 -4.1692 -3.9192 14 6 0.3664 -4.3318 -5.2954 15 1 -0.6812 -4.5687 -5.4079 16 6 1.1621 -4.1782 -6.4109 17 7 2.4378 -3.8894 -6.2740 18 14 0.4278 -4.3791 -8.1168 19 1 -0.6563 -3.3829 -8.3095 20 1 1.4838 -4.1647 -9.1386 21 1 -0.1278 -5.7490 -8.2583 22 6 -0.1293 -4.3896 -2.8646 23 6 0.4641 -4.1649 -1.4720 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.3271 2.7203 0.8827 28 1 4.1313 2.1316 0.0095 29 1 5.3552 -0.0042 0.0000 30 1 4.1197 -2.1326 -0.0102 31 1 2.0992 -3.3001 0.3352 32 1 0.5810 -2.4252 0.6481 33 1 2.4624 -1.5669 -2.2347 34 1 2.8698 -3.2983 -2.1750 35 1 2.3302 -2.6065 -4.4888 36 1 0.7363 -2.0253 -3.9494 37 1 1.7565 -4.8983 -3.7776 38 1 2.9976 -3.7809 -7.0588 39 1 -0.5071 -5.4093 -2.9390 40 1 -0.9453 -3.6862 -3.0304 41 1 1.2704 -4.8782 -1.3013 42 1 -0.3116 -4.3071 -0.7196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144118637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:43 Heat of formation + Delta-G solvation = -45.851508 kcal Electronic energy + Delta-G solvation = -21761.630339 eV Core-core repulsion = 18705.168300 eV Total energy + Delta-G solvation = -3056.462039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18595 -39.62594 -37.68995 -35.78246 -34.05430 -32.87434 -31.52227 -30.94928 -28.34014 -27.55979 -25.96639 -23.76064 -23.31659 -22.77994 -21.48165 -20.30497 -18.90622 -18.43546 -17.20584 -16.92165 -16.78697 -16.33342 -16.01584 -15.58374 -15.11603 -14.78636 -14.58384 -14.38465 -14.14441 -13.90009 -13.53196 -13.49498 -13.14967 -13.08120 -12.83350 -12.66042 -12.58744 -12.40712 -12.30447 -12.13542 -11.98755 -11.85010 -11.37253 -11.20967 -10.79910 -10.64477 -10.36781 -9.62147 -9.41262 -9.10456 -8.07251 -6.20730 0.31396 0.39960 1.40856 1.42665 1.49948 2.44024 2.62575 3.18724 3.22858 3.32853 3.80051 3.97587 4.14299 4.22626 4.26593 4.30639 4.34415 4.49222 4.52453 4.69617 4.72070 4.80477 4.84188 4.87744 4.91756 4.97214 4.99623 5.08042 5.11644 5.24651 5.34209 5.43722 5.47469 5.54123 5.58476 5.63120 5.70687 5.95648 6.01068 6.03657 6.28932 6.35114 6.41470 6.91190 6.91616 7.46987 8.97132 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.004573 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.967698 B = 6120.892826 C = 6421.175923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C 0.090 3.910 4 O -0.505 6.505 5 C -0.151 4.151 6 C -0.114 4.114 7 C -0.131 4.131 8 C -0.076 4.076 9 C 0.094 3.906 10 N -0.531 5.531 11 C 0.077 3.923 12 C -0.093 4.093 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.099 4.099 23 C 0.066 3.934 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.406 0.594 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.012 0.988 35 H 0.056 0.944 36 H 0.025 0.975 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.023 0.977 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 8.214 17.698 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C 0.045 3.955 4 O -0.318 6.318 5 C -0.169 4.169 6 C -0.132 4.132 7 C -0.149 4.149 8 C -0.076 4.076 9 C -0.033 4.033 10 N -0.256 5.256 11 C -0.051 4.051 12 C -0.132 4.132 13 C 0.026 3.974 14 C -0.572 4.572 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.137 4.137 23 C -0.062 4.062 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.264 0.736 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.144 0.856 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.245 8.496 16.880 18.899 hybrid contribution 0.634 -0.613 -0.687 1.118 sum 0.880 7.883 16.193 18.031 Atomic orbital electron populations 1.20720 0.89972 1.03395 1.02714 1.20249 0.97594 0.91926 1.00552 1.18442 0.90248 0.85062 1.01724 1.84774 1.76504 1.35401 1.35085 1.21614 0.93395 0.99596 1.02332 1.21218 1.00997 0.91441 0.99505 1.21288 0.93626 0.99088 1.00913 1.19642 0.93658 0.94417 0.99922 1.21129 0.98765 0.92901 0.90471 1.62060 1.33951 1.25723 1.03874 1.21945 0.91507 0.98887 0.92718 1.21402 0.99554 0.98221 0.94008 1.18652 0.93110 0.92547 0.93053 1.21577 0.95645 1.47458 0.92489 0.93028 1.25751 0.95217 0.94936 1.02774 1.70020 1.06095 1.49396 1.30338 0.85702 0.78054 0.78824 0.79624 1.19810 1.21006 1.19502 1.21534 0.98435 0.99863 0.93845 1.22083 0.98579 0.87603 0.97922 0.89763 0.90706 0.92008 0.73590 0.83955 0.83616 0.85631 0.93745 0.88279 0.91997 0.96971 0.92523 0.95657 0.99403 0.93161 0.92635 0.93043 0.95856 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 9.04 71.24 0.64 -2.05 16 2 C -0.10 -2.71 5.89 -19.77 -0.12 -2.83 16 3 C 0.09 2.23 6.68 22.51 0.15 2.39 16 4 O -0.51 -10.93 12.55 -92.36 -1.16 -12.08 16 5 C -0.15 -3.43 9.99 22.37 0.22 -3.21 16 6 C -0.11 -2.57 10.04 22.25 0.22 -2.35 16 7 C -0.13 -3.33 8.64 22.28 0.19 -3.13 16 8 C -0.08 -2.06 3.68 -19.88 -0.07 -2.13 16 9 C 0.09 2.53 4.53 85.56 0.39 2.92 16 10 N -0.53 -18.21 4.14 -900.97 -3.73 -21.93 16 11 C 0.08 3.15 4.80 86.33 0.41 3.57 16 12 C -0.09 -4.70 5.12 30.65 0.16 -4.54 16 13 C 0.04 2.33 2.16 -11.46 -0.02 2.30 16 14 C -0.53 -30.38 8.56 25.60 0.22 -30.17 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 16 C 0.01 0.65 5.31 84.65 0.45 1.10 16 17 N -0.92 -54.73 11.37 21.45 0.24 -54.49 16 18 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C -0.10 -4.14 5.32 30.65 0.16 -3.98 16 23 C 0.07 2.23 5.42 86.32 0.47 2.70 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 2.06 6.34 -2.39 -0.02 2.05 16 26 H 0.06 1.54 7.52 -2.38 -0.02 1.53 16 27 H 0.41 4.43 9.06 -74.06 -0.67 3.75 16 28 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.13 2.99 8.03 -2.91 -0.02 2.96 16 31 H 0.04 1.14 7.94 -2.38 -0.02 1.12 16 32 H 0.10 2.28 7.28 -2.39 -0.02 2.26 16 33 H 0.06 2.50 6.03 -2.39 -0.01 2.49 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 3.22 6.17 -2.39 -0.01 3.20 16 36 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 Total: -1.00 -66.49 329.78 1.19 -65.30 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.33 Total: 15.77 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 3.48 Total: -39.41 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -3.49 Total: -76.42 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.16 Total: -12.08 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.49 1.19 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144118637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.444 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds