Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99666 * 2 1 4 4 C 1.34772 * 120.00330 * 180.02562 * 2 1 3 5 5 O 1.21560 * 119.99859 * 4.31045 * 4 2 1 6 6 C 1.47848 * 120.00261 * 184.30834 * 4 2 1 7 7 C 1.39573 * 120.14174 * 148.11611 * 6 4 2 8 8 C 1.37965 * 119.84786 * 180.02562 * 7 6 4 9 9 C 1.38353 * 120.14588 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.85206 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46790 * 299.99625 * 10 9 8 12 12 C 1.52998 * 109.47337 * 59.99535 * 10 9 8 13 13 C 1.53004 * 109.47097 * 179.97438 * 10 9 8 14 14 C 1.50695 * 109.46928 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00089 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99689 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00298 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47327 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47268 * 120.00292 * 18 16 14 21 21 H 1.48502 * 109.47297 * 240.00421 * 18 16 14 22 22 C 1.38359 * 120.29584 * 0.23152 * 9 8 7 23 23 C 1.37960 * 120.14278 * 359.49219 * 22 9 8 24 24 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47327 * 299.99816 * 1 2 3 26 26 H 1.09000 * 109.47499 * 60.00235 * 1 2 3 27 27 H 1.09002 * 109.46917 * 274.45628 * 3 2 1 28 28 H 1.08996 * 109.47515 * 34.45833 * 3 2 1 29 29 H 1.09002 * 109.47270 * 154.46177 * 3 2 1 30 30 H 1.08000 * 120.07679 * 359.97438 * 7 6 4 31 31 H 1.08007 * 119.92462 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47625 * 60.00520 * 11 10 9 33 33 H 1.09000 * 109.47313 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47392 * 299.99584 * 11 10 9 35 35 H 1.09006 * 109.46886 * 59.99930 * 12 10 9 36 36 H 1.09000 * 109.46940 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47401 * 300.00365 * 12 10 9 38 38 H 1.08996 * 109.46927 * 300.00177 * 13 10 9 39 39 H 1.08997 * 109.46903 * 59.99744 * 13 10 9 40 40 H 0.97000 * 120.00237 * 179.97438 * 17 16 14 41 41 H 1.07991 * 119.93106 * 179.74880 * 22 9 8 42 42 H 1.08000 * 120.07748 * 180.25497 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5337 -2.2184 -0.0801 6 6 3.6142 -1.1690 0.0957 7 6 4.2734 -2.2182 0.7380 8 6 5.6503 -2.2135 0.8247 9 6 6.3774 -1.1716 0.2772 10 6 7.8812 -1.1729 0.3762 11 6 8.2952 -1.1813 1.8491 12 6 8.4370 -2.4185 -0.3168 13 6 8.4382 0.0797 -0.3034 14 6 9.9418 0.0786 -0.2038 15 1 10.4495 -0.7342 0.2941 16 6 10.6695 1.1150 -0.7493 17 7 10.0514 2.1046 -1.3560 18 14 12.5335 1.1135 -0.6264 19 1 12.9808 -0.1031 0.0982 20 1 13.1195 1.1198 -1.9909 21 1 12.9820 2.3221 0.1105 22 6 5.7299 -0.1258 -0.3563 23 6 4.3538 -0.1210 -0.4549 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.3099 1.6233 -1.0246 28 1 1.6453 2.0071 0.5814 29 1 3.1821 1.1199 0.4430 30 1 3.7069 -3.0315 1.1669 31 1 6.1616 -3.0246 1.3219 32 1 7.8985 -2.0738 2.3330 33 1 9.3828 -1.1827 1.9209 34 1 7.8994 -0.2938 2.3429 35 1 8.1419 -2.4125 -1.3662 36 1 9.5246 -2.4192 -0.2455 37 1 8.0402 -3.3111 0.1670 38 1 8.1432 0.0852 -1.3527 39 1 8.0423 0.9672 0.1900 40 1 10.5633 2.8339 -1.7394 41 1 6.3030 0.6865 -0.7780 42 1 3.8497 0.6938 -0.9532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148895092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -6.376207 kcal Electronic energy + Delta-G solvation = -21280.617754 eV Core-core repulsion = 18225.867492 eV Total energy + Delta-G solvation = -3054.750262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41910 -38.82497 -35.93912 -35.63507 -32.52731 -30.99373 -30.27718 -28.00823 -27.09045 -26.45169 -26.44165 -23.98479 -22.64604 -21.69385 -19.81780 -18.57882 -17.29442 -16.54067 -16.20474 -15.84372 -15.22462 -14.64511 -14.43449 -14.27999 -13.65612 -13.45460 -13.30446 -13.16091 -12.84643 -12.80226 -12.47271 -12.26892 -12.17217 -12.02133 -11.83442 -11.36412 -11.04639 -10.90533 -10.76627 -10.67432 -10.43838 -10.22581 -10.01228 -9.78061 -9.15026 -8.93289 -8.87997 -8.61634 -8.39697 -8.30821 -6.04064 -4.04388 1.18334 1.67926 2.83857 2.96245 3.28199 3.36710 3.39420 4.07093 4.42624 4.51541 4.86970 5.11203 5.14710 5.18249 5.23201 5.32721 5.32880 5.38895 5.58312 5.62232 5.68575 5.75431 5.91117 5.94421 5.96262 6.24375 6.30850 6.34859 6.37236 6.53141 6.58094 6.63830 6.67794 6.83577 7.05130 7.06238 7.19723 7.21804 7.29944 7.58519 7.71149 7.94755 8.10804 8.38491 9.00200 9.59141 11.07521 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029911 B = 0.004008 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.878331 B = 6984.193705 C = 7649.132573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.620 5.620 3 C 0.059 3.941 4 C 0.564 3.436 5 O -0.545 6.545 6 C -0.158 4.158 7 C -0.066 4.066 8 C -0.130 4.130 9 C -0.023 4.023 10 C -0.034 4.034 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.033 3.967 14 C -0.512 4.512 15 H 0.060 0.940 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.123 4.123 23 C -0.103 4.103 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.144 0.856 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 -2.454 3.825 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.353 5.353 3 C -0.083 4.083 4 C 0.355 3.645 5 O -0.423 6.423 6 C -0.160 4.160 7 C -0.085 4.085 8 C -0.148 4.148 9 C -0.023 4.023 10 C -0.034 4.034 11 C -0.180 4.180 12 C -0.181 4.181 13 C -0.004 4.004 14 C -0.550 4.550 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.141 4.141 23 C -0.121 4.121 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.162 0.838 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.316 -2.837 3.694 15.055 hybrid contribution 0.985 0.330 -0.072 1.042 sum -13.331 -2.507 3.622 14.039 Atomic orbital electron populations 1.21664 0.79223 1.04137 1.01155 1.47586 1.07013 1.06518 1.74196 1.22512 0.98977 0.84866 1.01993 1.18561 0.87621 0.83054 0.75277 1.90730 1.70096 1.31145 1.50355 1.19631 0.91748 0.98323 1.06346 1.21045 0.94266 0.96283 0.96875 1.21011 0.93068 0.99293 1.01451 1.20577 0.97048 0.92380 0.92317 1.19796 0.87729 0.99336 0.96576 1.21753 1.02355 0.99543 0.94350 1.21757 1.01954 0.94890 0.99460 1.19239 0.95647 0.90252 0.95228 1.21275 0.91620 1.06398 1.35683 0.92182 1.24988 0.98246 0.95705 0.95442 1.69953 1.35280 1.10472 1.37820 0.86610 0.86193 0.77932 0.77716 1.19764 1.21131 1.21126 1.21481 0.93496 0.99723 0.99374 1.21840 0.94623 0.97028 0.98589 0.89553 0.92273 0.92297 0.91976 0.91390 0.88359 0.85826 0.85752 0.94688 0.91258 0.93432 0.93414 0.91249 0.94664 0.96209 0.96207 0.93120 0.83824 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.70 59.85 0.64 1.40 16 2 N -0.62 -7.36 3.27 -190.64 -0.62 -7.98 16 3 C 0.06 0.54 8.85 59.85 0.53 1.07 16 4 C 0.56 8.56 7.44 -12.33 -0.09 8.47 16 5 O -0.54 -9.79 16.09 5.31 0.09 -9.71 16 6 C -0.16 -2.39 5.47 -104.97 -0.57 -2.96 16 7 C -0.07 -1.00 9.60 -39.18 -0.38 -1.37 16 8 C -0.13 -2.01 8.69 -39.64 -0.34 -2.35 16 9 C -0.02 -0.40 4.77 -104.53 -0.50 -0.90 16 10 C -0.03 -0.65 0.61 -155.66 -0.09 -0.75 16 11 C -0.12 -2.19 8.03 37.16 0.30 -1.89 16 12 C -0.12 -2.24 8.03 37.16 0.30 -1.94 16 13 C 0.03 0.78 2.70 -27.88 -0.08 0.70 16 14 C -0.51 -13.28 7.65 -34.44 -0.26 -13.54 16 15 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 C -0.12 -2.07 8.96 -39.64 -0.36 -2.42 16 23 C -0.10 -1.48 7.44 -39.18 -0.29 -1.77 16 24 H 0.09 0.94 6.91 -51.93 -0.36 0.58 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.50 7.44 -51.93 -0.39 0.12 16 28 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.10 1.01 4.72 -51.93 -0.25 0.76 16 30 H 0.12 1.75 7.95 -52.49 -0.42 1.34 16 31 H 0.12 1.72 7.08 -52.48 -0.37 1.35 16 32 H 0.03 0.53 7.37 -51.93 -0.38 0.15 16 33 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 37 H 0.03 0.55 7.38 -51.93 -0.38 0.16 16 38 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 39 H 0.02 0.50 7.49 -51.93 -0.39 0.11 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.14 2.60 5.87 -52.49 -0.31 2.29 16 42 H 0.14 1.61 4.80 -52.49 -0.25 1.36 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -30.54 330.33 -7.26 -37.79 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.12 Total: 0.74 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -1.30 Total: -16.82 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.11 Total: -32.79 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.54 -7.26 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148895092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.416 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds