Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99666 * 2 1 4 4 C 1.34772 * 120.00330 * 180.02562 * 2 1 3 5 5 O 1.21560 * 119.99859 * 4.31045 * 4 2 1 6 6 C 1.47848 * 120.00261 * 184.30834 * 4 2 1 7 7 C 1.39573 * 120.14174 * 148.11611 * 6 4 2 8 8 C 1.37965 * 119.84786 * 180.02562 * 7 6 4 9 9 C 1.38353 * 120.14588 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.85206 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46790 * 299.99625 * 10 9 8 12 12 C 1.52998 * 109.47337 * 59.99535 * 10 9 8 13 13 C 1.53004 * 109.47097 * 179.97438 * 10 9 8 14 14 C 1.50695 * 109.46928 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00089 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99689 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00298 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47327 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47268 * 120.00292 * 18 16 14 21 21 H 1.48502 * 109.47297 * 240.00421 * 18 16 14 22 22 C 1.38359 * 120.29584 * 0.23152 * 9 8 7 23 23 C 1.37960 * 120.14278 * 359.49219 * 22 9 8 24 24 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47327 * 299.99816 * 1 2 3 26 26 H 1.09000 * 109.47499 * 60.00235 * 1 2 3 27 27 H 1.09002 * 109.46917 * 274.45628 * 3 2 1 28 28 H 1.08996 * 109.47515 * 34.45833 * 3 2 1 29 29 H 1.09002 * 109.47270 * 154.46177 * 3 2 1 30 30 H 1.08000 * 120.07679 * 359.97438 * 7 6 4 31 31 H 1.08007 * 119.92462 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47625 * 60.00520 * 11 10 9 33 33 H 1.09000 * 109.47313 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47392 * 299.99584 * 11 10 9 35 35 H 1.09006 * 109.46886 * 59.99930 * 12 10 9 36 36 H 1.09000 * 109.46940 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47401 * 300.00365 * 12 10 9 38 38 H 1.08996 * 109.46927 * 300.00177 * 13 10 9 39 39 H 1.08997 * 109.46903 * 59.99744 * 13 10 9 40 40 H 0.97000 * 120.00237 * 179.97438 * 17 16 14 41 41 H 1.07991 * 119.93106 * 179.74880 * 22 9 8 42 42 H 1.08000 * 120.07748 * 180.25497 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5337 -2.2184 -0.0801 6 6 3.6142 -1.1690 0.0957 7 6 4.2734 -2.2182 0.7380 8 6 5.6503 -2.2135 0.8247 9 6 6.3774 -1.1716 0.2772 10 6 7.8812 -1.1729 0.3762 11 6 8.2952 -1.1813 1.8491 12 6 8.4370 -2.4185 -0.3168 13 6 8.4382 0.0797 -0.3034 14 6 9.9418 0.0786 -0.2038 15 1 10.4495 -0.7342 0.2941 16 6 10.6695 1.1150 -0.7493 17 7 10.0514 2.1046 -1.3560 18 14 12.5335 1.1135 -0.6264 19 1 12.9808 -0.1031 0.0982 20 1 13.1195 1.1198 -1.9909 21 1 12.9820 2.3221 0.1105 22 6 5.7299 -0.1258 -0.3563 23 6 4.3538 -0.1210 -0.4549 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.3099 1.6233 -1.0246 28 1 1.6453 2.0071 0.5814 29 1 3.1821 1.1199 0.4430 30 1 3.7069 -3.0315 1.1669 31 1 6.1616 -3.0246 1.3219 32 1 7.8985 -2.0738 2.3330 33 1 9.3828 -1.1827 1.9209 34 1 7.8994 -0.2938 2.3429 35 1 8.1419 -2.4125 -1.3662 36 1 9.5246 -2.4192 -0.2455 37 1 8.0402 -3.3111 0.1670 38 1 8.1432 0.0852 -1.3527 39 1 8.0423 0.9672 0.1900 40 1 10.5633 2.8339 -1.7394 41 1 6.3030 0.6865 -0.7780 42 1 3.8497 0.6938 -0.9532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148895092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = -22.970081 kcal Electronic energy + Delta-G solvation = -21281.337318 eV Core-core repulsion = 18225.867492 eV Total energy + Delta-G solvation = -3055.469826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57568 -40.10960 -37.36795 -36.69925 -34.48384 -32.22808 -31.54508 -29.27028 -28.53849 -27.90892 -27.44783 -25.64882 -23.96145 -23.05326 -20.92625 -20.07707 -18.51747 -18.18059 -17.45563 -16.84823 -16.69084 -16.26178 -15.63926 -15.58207 -14.98347 -14.87738 -14.62493 -14.30849 -14.23861 -13.87184 -13.72357 -13.63912 -13.38876 -13.19803 -13.02238 -12.82548 -12.67199 -12.59162 -12.31073 -12.24397 -11.92676 -11.87046 -11.64213 -11.02520 -10.83672 -10.76689 -10.49063 -9.91763 -9.74617 -9.54843 -8.12086 -6.18027 -0.04263 0.45799 1.41744 1.44144 1.54678 1.70002 2.00159 2.45720 2.83807 3.22948 3.45960 3.86747 3.91879 4.00894 4.23340 4.32376 4.42553 4.43227 4.47303 4.51305 4.59153 4.61323 4.70985 4.88318 4.89462 4.96820 4.97137 5.03673 5.13745 5.15474 5.31267 5.32885 5.40011 5.47258 5.51109 5.54046 5.57080 5.83024 5.84356 5.92957 5.99949 6.21069 6.37057 6.96483 7.01541 7.49166 9.00111 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029911 B = 0.004008 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.878331 B = 6984.193705 C = 7649.132573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.615 5.615 3 C 0.052 3.948 4 C 0.558 3.442 5 O -0.581 6.581 6 C -0.161 4.161 7 C -0.067 4.067 8 C -0.124 4.124 9 C -0.038 4.038 10 C -0.031 4.031 11 C -0.118 4.118 12 C -0.119 4.119 13 C 0.045 3.955 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.951 3.049 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.141 4.141 23 C -0.088 4.088 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.146 0.854 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.067 0.933 38 H -0.009 1.009 39 H -0.006 1.006 40 H 0.259 0.741 41 H 0.121 0.879 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 -2.995 4.731 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.089 4.089 4 C 0.349 3.651 5 O -0.463 6.463 6 C -0.164 4.164 7 C -0.086 4.086 8 C -0.142 4.142 9 C -0.039 4.039 10 C -0.031 4.031 11 C -0.175 4.175 12 C -0.177 4.177 13 C 0.008 3.992 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.777 3.223 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.159 4.159 23 C -0.106 4.106 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.009 0.991 39 H 0.013 0.987 40 H 0.068 0.932 41 H 0.138 0.862 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.080 -3.354 4.611 16.122 hybrid contribution 1.109 0.563 -0.361 1.295 sum -13.971 -2.791 4.250 14.867 Atomic orbital electron populations 1.21861 0.77614 1.03699 1.03380 1.47742 1.08201 1.06381 1.72325 1.22674 0.98609 0.84207 1.03415 1.18576 0.87511 0.83590 0.75468 1.90711 1.70563 1.32533 1.52471 1.19808 0.92225 0.98354 1.06041 1.21239 0.94272 0.96546 0.96553 1.21095 0.93098 0.98999 1.00968 1.20451 0.95972 0.93584 0.93860 1.19642 0.89138 0.97321 0.96971 1.21695 1.01469 1.00800 0.93558 1.21707 1.01111 0.95748 0.99091 1.19039 0.94668 0.91792 0.93698 1.21692 0.92996 1.06159 1.34696 0.91523 1.25820 1.02788 0.95585 0.95431 1.70083 1.36951 1.11277 1.39155 0.85604 0.80847 0.78232 0.77618 1.18520 1.21106 1.20942 1.21363 0.94531 0.99483 1.00483 1.21982 0.93469 0.97435 0.97732 0.91334 0.89888 0.90164 0.90423 0.88602 0.89537 0.84726 0.83648 0.91428 0.92639 0.94170 0.94518 0.92565 0.91434 0.99091 0.98727 0.93194 0.86155 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.70 127.77 1.37 2.61 16 2 N -0.61 -13.26 3.27 -875.35 -2.87 -16.13 16 3 C 0.05 0.82 8.85 127.77 1.13 1.95 16 4 C 0.56 16.21 7.44 86.79 0.65 16.85 16 5 O -0.58 -20.50 16.09 -3.90 -0.06 -20.56 16 6 C -0.16 -4.69 5.47 -20.09 -0.11 -4.80 16 7 C -0.07 -1.93 9.60 22.53 0.22 -1.72 16 8 C -0.12 -3.59 8.69 22.23 0.19 -3.40 16 9 C -0.04 -1.31 4.77 -19.81 -0.09 -1.41 16 10 C -0.03 -1.17 0.61 -52.93 -0.03 -1.20 16 11 C -0.12 -4.09 8.03 71.98 0.58 -3.51 16 12 C -0.12 -4.23 8.03 71.98 0.58 -3.65 16 13 C 0.04 2.19 2.70 29.85 0.08 2.27 16 14 C -0.52 -27.33 7.65 25.60 0.20 -27.13 16 15 H 0.07 3.37 5.68 -2.91 -0.02 3.35 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 18 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C -0.14 -4.81 8.96 22.23 0.20 -4.61 16 23 C -0.09 -2.49 7.44 22.53 0.17 -2.32 16 24 H 0.07 1.40 6.91 -2.38 -0.02 1.39 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.03 7.44 -2.39 -0.02 1.01 16 28 H 0.10 1.02 8.11 -2.39 -0.02 1.00 16 29 H 0.09 1.61 4.72 -2.39 -0.01 1.60 16 30 H 0.13 3.57 7.95 -2.91 -0.02 3.55 16 31 H 0.15 3.54 7.08 -2.91 -0.02 3.52 16 32 H 0.07 1.88 7.37 -2.39 -0.02 1.87 16 33 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 37 H 0.07 1.93 7.38 -2.39 -0.02 1.92 16 38 H -0.01 -0.50 7.52 -2.39 -0.02 -0.52 16 39 H -0.01 -0.30 7.49 -2.39 -0.02 -0.31 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.12 4.65 5.87 -2.92 -0.02 4.63 16 42 H 0.16 3.59 4.80 -2.91 -0.01 3.58 16 Total: -1.00 -67.14 330.33 5.97 -61.16 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.01 Total: 14.45 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 5.58 Total: -29.54 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -2.58 Total: -70.59 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.14 5.97 -61.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148895092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.192 kcal (2) G-P(sol) polarization free energy of solvation -67.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds