Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35670 * 116.99950 * 2 1 4 4 C 1.38042 * 120.21213 * 359.97438 * 3 2 1 5 5 C 1.39209 * 119.97894 * 180.02562 * 4 3 2 6 6 N 1.38923 * 119.79705 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99999 * 172.63771 * 6 5 4 8 8 C 1.53001 * 109.47358 * 305.44034 * 7 6 5 9 9 C 1.52999 * 109.46951 * 65.44235 * 7 6 5 10 10 C 1.52996 * 109.46961 * 185.44456 * 7 6 5 11 11 C 1.53006 * 117.49738 * 243.74664 * 10 7 6 12 12 C 1.53000 * 117.49887 * 175.08978 * 10 7 6 13 13 C 1.39722 * 120.40497 * 0.02562 * 5 4 3 14 14 C 1.36224 * 120.43023 * 359.69528 * 13 5 4 15 15 C 1.40855 * 120.00746 * 0.56139 * 14 13 5 16 16 C 1.40968 * 120.19731 * 179.73999 * 15 14 13 17 17 H 1.08005 * 119.99641 * 205.18024 * 16 15 14 18 18 C 1.39845 * 120.00437 * 25.18350 * 16 15 14 19 19 N 1.30950 * 120.00270 * 203.93216 * 18 16 15 20 20 Si 1.86803 * 119.99487 * 23.93442 * 18 16 15 21 21 H 1.48507 * 109.46900 * 269.99692 * 20 18 16 22 22 H 1.48494 * 109.47695 * 29.99849 * 20 18 16 23 23 H 1.48500 * 109.46890 * 150.00201 * 20 18 16 24 24 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47289 * 299.99674 * 1 2 3 26 26 H 1.09006 * 109.46840 * 59.99976 * 1 2 3 27 27 H 1.07994 * 120.00539 * 0.03564 * 4 3 2 28 28 H 0.96999 * 120.00199 * 352.64470 * 6 5 4 29 29 H 1.09004 * 109.46840 * 64.95587 * 8 7 6 30 30 H 1.08996 * 109.47677 * 184.95850 * 8 7 6 31 31 H 1.09008 * 109.47140 * 304.96460 * 8 7 6 32 32 H 1.08997 * 109.47230 * 69.30186 * 9 7 6 33 33 H 1.09003 * 109.46611 * 189.30007 * 9 7 6 34 34 H 1.09001 * 109.47127 * 309.29955 * 9 7 6 35 35 H 1.08996 * 115.55719 * 29.41433 * 10 7 6 36 36 H 1.09002 * 117.49658 * 0.02562 * 11 10 7 37 37 H 1.08999 * 117.49971 * 145.01944 * 11 10 7 38 38 H 1.08999 * 117.50144 * 214.97756 * 12 10 7 39 39 H 1.09000 * 117.49754 * 359.97438 * 12 10 7 40 40 H 1.08002 * 119.78257 * 179.97438 * 13 5 4 41 41 H 1.08010 * 119.99426 * 180.29643 * 14 13 5 42 42 H 0.96998 * 119.99705 * 354.97260 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3693 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1784 4.7726 -0.0021 7 6 1.8353 6.0720 0.1599 8 6 2.6794 6.0613 1.4360 9 6 2.7376 6.3412 -1.0461 10 6 0.7751 7.1706 0.2590 11 6 0.7465 8.2267 -0.8477 12 6 1.2572 8.5936 0.5478 13 6 3.3295 3.6844 -0.0016 14 6 4.0834 2.5498 0.0046 15 6 3.4574 1.2881 -0.0003 16 6 4.2337 0.1114 0.0006 17 1 3.8261 -0.8047 -0.4007 18 6 5.5315 0.1302 0.5212 19 7 6.4079 -0.7596 0.1275 20 14 6.0148 1.4246 1.7783 21 1 6.5453 2.6216 1.0774 22 1 4.8236 1.8069 2.5783 23 1 7.0599 0.8745 2.6785 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2187 2.3169 -0.0004 28 1 0.2156 4.7261 -0.1101 29 1 3.4891 5.3392 1.3299 30 1 3.0973 7.0538 1.6036 31 1 2.0530 5.7828 2.2835 32 1 2.1221 6.5129 -1.9292 33 1 3.3493 7.2224 -0.8526 34 1 3.3840 5.4801 -1.2156 35 1 -0.1792 6.8657 0.6884 36 1 1.4827 8.1385 -1.6467 37 1 -0.2266 8.6168 -1.1461 38 1 0.6200 9.2250 1.1670 39 1 2.3297 8.7471 0.6676 40 1 3.8133 4.6500 -0.0024 41 1 5.1614 2.6178 0.0090 42 1 6.1379 -1.4753 -0.4690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162517754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = 26.162613 kcal Electronic energy + Delta-G solvation = -21808.876364 eV Core-core repulsion = 18755.537091 eV Total energy + Delta-G solvation = -3053.339273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.65543 -38.53357 -36.58783 -34.73842 -33.01478 -31.11309 -29.11939 -28.43319 -27.19974 -26.58921 -24.61109 -22.59382 -22.29512 -21.34808 -20.34213 -18.81025 -17.98000 -16.97881 -16.74737 -15.30804 -15.05163 -14.75752 -14.41718 -14.15296 -14.02535 -13.80574 -13.39650 -13.12189 -12.65357 -12.48871 -12.32557 -12.10101 -11.77688 -11.44919 -11.40012 -11.31587 -11.00242 -10.81478 -10.56899 -10.48250 -10.36316 -10.28987 -10.01467 -9.96754 -9.74455 -9.19698 -8.99081 -8.44637 -7.30423 -7.16621 -6.55785 -4.03523 2.69372 2.85373 3.30301 3.46637 3.64608 3.65262 4.10859 4.18008 4.42594 4.62686 4.68172 4.87148 4.95755 5.18658 5.29774 5.48281 5.50734 5.59699 5.68929 5.74538 5.76134 5.84354 5.87056 5.90025 6.02007 6.03091 6.05937 6.12191 6.15868 6.17579 6.51319 6.59838 6.66443 6.78801 6.96511 7.13707 7.50356 7.67094 7.80325 7.91766 8.26694 8.40166 8.56215 8.68629 8.83601 9.09956 10.24597 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.005821 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.445736 B = 4809.272765 C = 5858.299423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.056 3.944 4 C -0.230 4.230 5 C 0.126 3.874 6 N -0.749 5.749 7 C 0.220 3.780 8 C -0.173 4.173 9 C -0.181 4.181 10 C -0.150 4.150 11 C -0.185 4.185 12 C -0.173 4.173 13 C -0.178 4.178 14 C -0.196 4.196 15 C 0.054 3.946 16 C -0.510 4.510 17 H 0.076 0.924 18 C 0.041 3.959 19 N -0.829 5.829 20 Si 1.071 2.929 21 H -0.278 1.278 22 H -0.266 1.266 23 H -0.292 1.292 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.384 0.616 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 13.939 0.660 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C 0.011 3.989 4 C -0.253 4.253 5 C 0.028 3.972 6 N -0.383 5.383 7 C 0.132 3.868 8 C -0.231 4.231 9 C -0.239 4.239 10 C -0.168 4.168 11 C -0.221 4.221 12 C -0.210 4.210 13 C -0.199 4.199 14 C -0.216 4.216 15 C 0.050 3.950 16 C -0.540 4.540 17 H 0.094 0.906 18 C -0.177 4.177 19 N -0.453 5.453 20 Si 0.899 3.101 21 H -0.205 1.205 22 H -0.191 1.191 23 H -0.220 1.220 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.217 0.783 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.955 14.316 1.529 16.449 hybrid contribution -2.121 -0.546 -1.063 2.434 sum -10.076 13.770 0.466 17.069 Atomic orbital electron populations 1.22750 0.81620 1.01844 0.99933 1.86018 1.18316 1.28110 1.89773 1.18921 0.92037 0.82285 1.05684 1.20180 0.97358 0.91521 1.16236 1.16862 0.90262 0.84716 1.05385 1.43999 1.07169 1.01959 1.85154 1.19330 0.90746 0.82397 0.94281 1.22508 1.01351 1.01863 0.97342 1.22702 1.00446 1.02475 0.98286 1.22443 1.00342 0.90223 1.03825 1.23200 1.02875 1.03319 0.92753 1.22934 1.01628 0.97366 0.99087 1.20386 0.91767 0.97938 1.09835 1.20522 0.98430 0.91595 1.11045 1.17070 0.88088 0.93675 0.96193 1.20235 0.99580 0.97025 1.37154 0.90632 1.27117 0.91968 1.00948 0.97634 1.70587 1.35077 1.12622 1.26992 0.83648 0.76591 0.74130 0.75770 1.20510 1.19065 1.21995 0.89968 0.94053 0.94195 0.88306 0.78339 0.90090 0.92740 0.92552 0.92370 0.92804 0.89884 0.87917 0.87841 0.89307 0.89056 0.88573 0.86657 0.87130 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.23 9.79 -18.71 -0.18 -7.41 16 3 C 0.06 1.37 6.71 -38.42 -0.26 1.11 16 4 C -0.23 -4.91 8.87 -39.29 -0.35 -5.26 16 5 C 0.13 2.53 6.23 -83.73 -0.52 2.01 16 6 N -0.75 -12.02 5.22 -45.90 -0.24 -12.26 16 7 C 0.22 3.03 0.92 -131.82 -0.12 2.91 16 8 C -0.17 -2.47 8.03 37.16 0.30 -2.17 16 9 C -0.18 -2.47 6.92 37.16 0.26 -2.21 16 10 C -0.15 -1.67 5.32 -90.62 -0.48 -2.15 16 11 C -0.18 -1.80 9.52 -26.69 -0.25 -2.05 16 12 C -0.17 -1.64 9.47 -26.69 -0.25 -1.89 16 13 C -0.18 -3.79 6.68 -39.75 -0.27 -4.06 16 14 C -0.20 -4.79 7.35 -39.32 -0.29 -5.08 16 15 C 0.05 1.43 5.19 -106.64 -0.55 0.87 16 16 C -0.51 -14.57 9.05 -37.95 -0.34 -14.91 16 17 H 0.08 2.29 7.81 -52.48 -0.41 1.88 16 18 C 0.04 1.12 5.34 -17.33 -0.09 1.03 16 19 N -0.83 -23.39 13.66 55.54 0.76 -22.63 16 20 Si 1.07 25.30 25.14 -169.99 -4.27 21.03 16 21 H -0.28 -6.15 6.33 56.52 0.36 -5.79 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 26 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.10 1.84 6.29 -52.49 -0.33 1.51 16 28 H 0.38 5.57 8.44 -40.82 -0.34 5.22 16 29 H 0.08 1.33 4.68 -51.93 -0.24 1.08 16 30 H 0.05 0.65 6.82 -51.93 -0.35 0.30 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.06 0.76 6.55 -51.93 -0.34 0.42 16 33 H 0.05 0.63 7.96 -51.93 -0.41 0.22 16 34 H 0.08 1.33 4.82 -51.93 -0.25 1.08 16 35 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.10 1.03 5.78 -51.93 -0.30 0.73 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.90 7.20 -51.93 -0.37 0.53 16 40 H 0.12 2.19 3.38 -52.49 -0.18 2.01 16 41 H 0.11 2.70 4.36 -52.48 -0.23 2.47 16 42 H 0.28 7.85 8.73 -40.82 -0.36 7.49 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -29.49 318.54 -7.24 -36.73 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.87 Total: 10.02 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -2.23 Total: -30.28 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.52 Total: -34.89 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.18 Total: -7.41 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.27 Total: 21.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.49 -7.24 -36.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162517754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.888 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds