Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35670 * 116.99950 * 2 1 4 4 C 1.38042 * 120.21213 * 359.97438 * 3 2 1 5 5 C 1.39209 * 119.97894 * 180.02562 * 4 3 2 6 6 N 1.38923 * 119.79705 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99999 * 172.63771 * 6 5 4 8 8 C 1.53001 * 109.47358 * 305.44034 * 7 6 5 9 9 C 1.52999 * 109.46951 * 65.44235 * 7 6 5 10 10 C 1.52996 * 109.46961 * 185.44456 * 7 6 5 11 11 C 1.53006 * 117.49738 * 243.74664 * 10 7 6 12 12 C 1.53000 * 117.49887 * 175.08978 * 10 7 6 13 13 C 1.39722 * 120.40497 * 0.02562 * 5 4 3 14 14 C 1.36224 * 120.43023 * 359.69528 * 13 5 4 15 15 C 1.40855 * 120.00746 * 0.56139 * 14 13 5 16 16 C 1.40968 * 120.19731 * 179.73999 * 15 14 13 17 17 H 1.08005 * 119.99641 * 205.18024 * 16 15 14 18 18 C 1.39845 * 120.00437 * 25.18350 * 16 15 14 19 19 N 1.30950 * 120.00270 * 203.93216 * 18 16 15 20 20 Si 1.86803 * 119.99487 * 23.93442 * 18 16 15 21 21 H 1.48507 * 109.46900 * 269.99692 * 20 18 16 22 22 H 1.48494 * 109.47695 * 29.99849 * 20 18 16 23 23 H 1.48500 * 109.46890 * 150.00201 * 20 18 16 24 24 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47289 * 299.99674 * 1 2 3 26 26 H 1.09006 * 109.46840 * 59.99976 * 1 2 3 27 27 H 1.07994 * 120.00539 * 0.03564 * 4 3 2 28 28 H 0.96999 * 120.00199 * 352.64470 * 6 5 4 29 29 H 1.09004 * 109.46840 * 64.95587 * 8 7 6 30 30 H 1.08996 * 109.47677 * 184.95850 * 8 7 6 31 31 H 1.09008 * 109.47140 * 304.96460 * 8 7 6 32 32 H 1.08997 * 109.47230 * 69.30186 * 9 7 6 33 33 H 1.09003 * 109.46611 * 189.30007 * 9 7 6 34 34 H 1.09001 * 109.47127 * 309.29955 * 9 7 6 35 35 H 1.08996 * 115.55719 * 29.41433 * 10 7 6 36 36 H 1.09002 * 117.49658 * 0.02562 * 11 10 7 37 37 H 1.08999 * 117.49971 * 145.01944 * 11 10 7 38 38 H 1.08999 * 117.50144 * 214.97756 * 12 10 7 39 39 H 1.09000 * 117.49754 * 359.97438 * 12 10 7 40 40 H 1.08002 * 119.78257 * 179.97438 * 13 5 4 41 41 H 1.08010 * 119.99426 * 180.29643 * 14 13 5 42 42 H 0.96998 * 119.99705 * 354.97260 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3693 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1784 4.7726 -0.0021 7 6 1.8353 6.0720 0.1599 8 6 2.6794 6.0613 1.4360 9 6 2.7376 6.3412 -1.0461 10 6 0.7751 7.1706 0.2590 11 6 0.7465 8.2267 -0.8477 12 6 1.2572 8.5936 0.5478 13 6 3.3295 3.6844 -0.0016 14 6 4.0834 2.5498 0.0046 15 6 3.4574 1.2881 -0.0003 16 6 4.2337 0.1114 0.0006 17 1 3.8261 -0.8047 -0.4007 18 6 5.5315 0.1302 0.5212 19 7 6.4079 -0.7596 0.1275 20 14 6.0148 1.4246 1.7783 21 1 6.5453 2.6216 1.0774 22 1 4.8236 1.8069 2.5783 23 1 7.0599 0.8745 2.6785 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2187 2.3169 -0.0004 28 1 0.2156 4.7261 -0.1101 29 1 3.4891 5.3392 1.3299 30 1 3.0973 7.0538 1.6036 31 1 2.0530 5.7828 2.2835 32 1 2.1221 6.5129 -1.9292 33 1 3.3493 7.2224 -0.8526 34 1 3.3840 5.4801 -1.2156 35 1 -0.1792 6.8657 0.6884 36 1 1.4827 8.1385 -1.6467 37 1 -0.2266 8.6168 -1.1461 38 1 0.6200 9.2250 1.1670 39 1 2.3297 8.7471 0.6676 40 1 3.8133 4.6500 -0.0024 41 1 5.1614 2.6178 0.0090 42 1 6.1379 -1.4753 -0.4690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162517754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = 7.688015 kcal Electronic energy + Delta-G solvation = -21809.677483 eV Core-core repulsion = 18755.537091 eV Total energy + Delta-G solvation = -3054.140391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06659 -39.97608 -38.09583 -36.32199 -34.73825 -32.60565 -30.85706 -30.04469 -28.28348 -28.08536 -26.20760 -23.93943 -23.05965 -23.00918 -22.07818 -20.13597 -19.77007 -18.59280 -17.96616 -16.74961 -16.41926 -16.36519 -15.96219 -15.88356 -15.30516 -15.17476 -14.82451 -14.61180 -14.32317 -13.88641 -13.65620 -13.46156 -13.13529 -12.94390 -12.87524 -12.44560 -12.34877 -12.14739 -12.07171 -12.00905 -11.73063 -11.67467 -11.39482 -11.18375 -11.02896 -10.92248 -10.78861 -10.23999 -9.23354 -9.03344 -8.31321 -6.07206 0.86769 1.00783 1.39028 1.59419 1.79172 2.26967 2.62155 2.73885 2.84992 3.06649 3.57344 3.72488 4.06516 4.16021 4.18958 4.23057 4.31355 4.38965 4.43222 4.45747 4.53887 4.67627 4.72920 4.80049 4.82221 4.89047 4.99390 5.03210 5.05756 5.08800 5.17210 5.23755 5.33672 5.43400 5.49062 5.51016 5.62744 5.71158 5.85929 6.10325 6.33086 6.62096 6.78930 6.90249 7.12740 7.28826 8.16270 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.005821 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.445736 B = 4809.272765 C = 5858.299423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.051 3.949 4 C -0.240 4.240 5 C 0.163 3.837 6 N -0.737 5.737 7 C 0.215 3.785 8 C -0.173 4.173 9 C -0.180 4.180 10 C -0.161 4.161 11 C -0.180 4.180 12 C -0.162 4.162 13 C -0.191 4.191 14 C -0.189 4.189 15 C 0.007 3.993 16 C -0.545 4.545 17 H 0.032 0.968 18 C 0.003 3.997 19 N -0.863 5.863 20 Si 1.105 2.895 21 H -0.253 1.253 22 H -0.267 1.267 23 H -0.283 1.283 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.131 0.869 28 H 0.396 0.604 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 18.330 1.198 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.258 6.258 3 C 0.006 3.994 4 C -0.263 4.263 5 C 0.062 3.938 6 N -0.370 5.370 7 C 0.128 3.872 8 C -0.231 4.231 9 C -0.238 4.238 10 C -0.180 4.180 11 C -0.216 4.216 12 C -0.200 4.200 13 C -0.212 4.212 14 C -0.209 4.209 15 C 0.003 3.997 16 C -0.576 4.576 17 H 0.050 0.950 18 C -0.206 4.206 19 N -0.489 5.489 20 Si 0.926 3.074 21 H -0.179 1.179 22 H -0.192 1.192 23 H -0.210 1.210 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.231 0.769 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.298 18.750 2.051 21.490 hybrid contribution -1.768 -1.662 -1.286 2.747 sum -12.067 17.089 0.765 20.933 Atomic orbital electron populations 1.23108 0.78310 1.04158 1.01291 1.85978 1.21871 1.28280 1.89718 1.19152 0.91859 0.83715 1.04678 1.20449 0.98895 0.90756 1.16237 1.17078 0.90320 0.85926 1.00445 1.44184 1.07776 1.01724 1.83291 1.19546 0.91641 0.81854 0.94156 1.22499 1.00577 1.02765 0.97274 1.22669 1.00324 1.02320 0.98457 1.22301 0.99770 0.90084 1.05837 1.23265 1.03586 1.02086 0.92697 1.23039 1.02166 0.95761 0.99000 1.20693 0.92386 0.98194 1.09951 1.20657 0.98676 0.91822 1.09703 1.17269 0.89526 0.93748 0.99153 1.20073 1.01002 0.96542 1.40003 0.94992 1.28201 0.91833 1.02266 0.98328 1.70675 1.35344 1.13888 1.29031 0.83248 0.76563 0.73311 0.74256 1.17852 1.19180 1.20976 0.87485 0.92503 0.92653 0.85164 0.76914 0.92336 0.90161 0.93091 0.91675 0.90599 0.92427 0.87438 0.87996 0.88060 0.87609 0.88239 0.83867 0.87555 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.96 16 2 O -0.34 -16.44 9.79 -89.87 -0.88 -17.32 16 3 C 0.05 2.54 6.71 23.02 0.15 2.70 16 4 C -0.24 -9.74 8.87 22.46 0.20 -9.54 16 5 C 0.16 6.13 6.23 38.61 0.24 6.38 16 6 N -0.74 -20.75 5.22 -299.12 -1.56 -22.31 16 7 C 0.21 5.01 0.92 3.60 0.00 5.01 16 8 C -0.17 -4.29 8.03 71.98 0.58 -3.71 16 9 C -0.18 -4.20 6.92 71.98 0.50 -3.70 16 10 C -0.16 -2.84 5.32 -10.79 -0.06 -2.90 16 11 C -0.18 -2.64 9.52 30.62 0.29 -2.35 16 12 C -0.16 -2.27 9.47 30.62 0.29 -1.98 16 13 C -0.19 -7.79 6.68 22.16 0.15 -7.64 16 14 C -0.19 -9.25 7.35 22.44 0.17 -9.09 16 15 C 0.01 0.36 5.19 -21.17 -0.11 0.25 16 16 C -0.54 -33.36 9.05 23.33 0.21 -33.15 16 17 H 0.03 2.14 7.81 -2.91 -0.02 2.11 16 18 C 0.00 0.20 5.34 85.21 0.45 0.65 16 19 N -0.86 -52.02 13.66 21.82 0.30 -51.72 16 20 Si 1.10 52.32 25.14 68.60 1.72 54.04 16 21 H -0.25 -10.81 6.33 99.48 0.63 -10.18 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.06 1.65 7.66 -2.39 -0.02 1.63 16 26 H 0.05 1.61 7.66 -2.38 -0.02 1.59 16 27 H 0.13 4.39 6.29 -2.91 -0.02 4.37 16 28 H 0.40 9.66 8.44 -92.71 -0.78 8.88 16 29 H 0.06 1.73 4.68 -2.39 -0.01 1.71 16 30 H 0.08 1.57 6.82 -2.39 -0.02 1.55 16 31 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.06 1.44 6.55 -2.39 -0.02 1.42 16 33 H 0.08 1.45 7.96 -2.39 -0.02 1.43 16 34 H 0.06 1.66 4.82 -2.39 -0.01 1.65 16 35 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 36 H 0.10 1.56 5.78 -2.39 -0.01 1.54 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 1.35 7.20 -2.39 -0.02 1.33 16 40 H 0.14 5.06 3.38 -2.91 -0.01 5.05 16 41 H 0.11 5.22 4.36 -2.91 -0.01 5.20 16 42 H 0.27 16.33 8.73 -92.71 -0.81 15.52 16 Total: -1.00 -68.95 318.54 3.91 -65.03 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.15 Total: 29.38 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 4.18 Total: -57.11 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.26 Total: -74.03 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.88 Total: -17.32 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 1.72 Total: 54.04 kcal Total: -68.95 3.91 -65.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162517754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.723 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds