Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35960 * 117.00086 * 2 1 4 4 C 1.39420 * 119.81911 * 0.02562 * 3 2 1 5 5 C 1.38086 * 120.56613 * 179.70146 * 4 3 2 6 6 C 1.38726 * 120.20579 * 0.27160 * 5 4 3 7 7 N 1.38855 * 120.18105 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00385 * 354.51844 * 7 6 5 9 9 C 1.53007 * 109.46840 * 304.54608 * 8 7 6 10 10 C 1.53003 * 109.47139 * 64.54426 * 8 7 6 11 11 C 1.53000 * 109.47254 * 184.54741 * 8 7 6 12 12 C 1.53005 * 117.49883 * 243.61781 * 11 8 7 13 13 C 1.52998 * 60.00009 * 252.51131 * 12 11 8 14 14 C 1.41540 * 119.63374 * 0.02562 * 6 5 4 15 15 C 1.41032 * 120.27590 * 180.02562 * 14 6 5 16 16 H 1.07995 * 119.99763 * 34.90049 * 15 14 6 17 17 C 1.39902 * 119.99602 * 214.91253 * 15 14 6 18 18 N 1.30889 * 120.00207 * 5.06556 * 17 15 14 19 19 Si 1.86806 * 119.99603 * 185.06756 * 17 15 14 20 20 H 1.48497 * 109.47022 * 89.99514 * 19 17 15 21 21 H 1.48499 * 109.46985 * 209.99647 * 19 17 15 22 22 H 1.48507 * 109.47133 * 329.99820 * 19 17 15 23 23 C 1.37840 * 119.82034 * 180.25818 * 3 2 1 24 24 H 1.08998 * 109.46370 * 299.99276 * 1 2 3 25 25 H 1.09000 * 109.47085 * 59.99626 * 1 2 3 26 26 H 1.08997 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.71268 * 359.97140 * 4 3 2 28 28 H 1.08005 * 119.90236 * 180.29347 * 5 4 3 29 29 H 0.97005 * 119.99791 * 174.51373 * 7 6 5 30 30 H 1.08997 * 109.47109 * 64.99856 * 9 8 7 31 31 H 1.09003 * 109.46987 * 184.99350 * 9 8 7 32 32 H 1.08998 * 109.47318 * 304.99431 * 9 8 7 33 33 H 1.08993 * 109.47066 * 55.04017 * 10 8 7 34 34 H 1.09007 * 109.46735 * 175.03498 * 10 8 7 35 35 H 1.08999 * 109.47167 * 295.03706 * 10 8 7 36 36 H 1.08996 * 115.54851 * 29.33236 * 11 8 7 37 37 H 1.09002 * 117.49776 * 0.02562 * 12 11 8 38 38 H 1.08998 * 117.49489 * 145.01733 * 12 11 8 39 39 H 1.09001 * 117.50049 * 252.50847 * 13 12 11 40 40 H 1.09007 * 117.49854 * 107.49006 * 13 12 11 41 41 H 0.97005 * 120.00077 * 180.02562 * 18 17 15 42 42 H 1.07996 * 120.10736 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8941 3.6167 0.0067 6 6 3.2781 3.7123 0.0068 7 7 3.8918 4.9579 0.0136 8 6 3.0827 6.1738 -0.1005 9 6 2.2241 6.0982 -1.3647 10 6 2.1757 6.2997 1.1252 11 6 4.0032 7.3932 -0.1813 12 6 3.9231 8.4153 0.9544 13 6 3.3509 8.7559 -0.4230 14 6 4.0611 2.5332 0.0000 15 6 5.4690 2.6147 0.0005 16 1 5.9638 3.4085 0.5403 17 6 6.2247 1.6672 -0.6984 18 7 5.6255 0.7650 -1.4333 19 14 8.0891 1.6898 -0.5828 20 1 8.5251 0.8359 0.5511 21 1 8.6697 1.1692 -1.8465 22 1 8.5544 3.0826 -0.3610 23 6 3.4230 1.2792 -0.0054 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2053 2.3130 0.0005 28 1 1.2926 4.5137 0.0119 29 1 4.8563 5.0229 0.0940 30 1 1.5073 5.2827 -1.2689 31 1 1.6890 7.0386 -1.4973 32 1 2.8643 5.9196 -2.2286 33 1 2.7815 6.2649 2.0306 34 1 1.6384 7.2473 1.0838 35 1 1.4609 5.4769 1.1344 36 1 4.9799 7.2159 -0.6314 37 1 3.2149 8.2187 1.7594 38 1 4.8475 8.9104 1.2519 39 1 3.8987 9.4753 -1.0318 40 1 2.2659 8.7837 -0.5245 41 1 6.1494 0.1078 -1.9176 42 1 4.0101 0.3727 -0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162522223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = 24.306973 kcal Electronic energy + Delta-G solvation = -21869.217115 eV Core-core repulsion = 18815.797376 eV Total energy + Delta-G solvation = -3053.419739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.39620 -38.32263 -36.55996 -34.20250 -32.99766 -30.66826 -29.23096 -27.79187 -27.01716 -26.04103 -25.00068 -22.95090 -22.10960 -21.13462 -19.92011 -18.51034 -17.62084 -16.52537 -15.91103 -15.67752 -14.89246 -14.66679 -14.54895 -14.29715 -13.94829 -13.36050 -13.11314 -12.81244 -12.44639 -12.22612 -11.77459 -11.69343 -11.62020 -11.31350 -11.23059 -11.13619 -11.01353 -10.93391 -10.84306 -10.58587 -10.32673 -10.21461 -10.07457 -9.85728 -9.72038 -9.13546 -9.06602 -8.30697 -7.23708 -6.55784 -5.88154 -4.15914 2.86033 3.14972 3.16541 3.20886 3.28408 3.87314 4.04944 4.41818 4.53546 4.80980 4.84865 5.05634 5.16118 5.43674 5.50029 5.64833 5.67712 5.76986 5.79765 5.86540 5.91146 5.97178 5.99131 6.06869 6.15645 6.19262 6.28669 6.31660 6.32827 6.43746 6.73304 6.79571 6.94495 7.09283 7.29153 7.53296 7.63103 7.67606 7.99471 8.11247 8.34737 8.70218 8.89718 8.93643 9.07906 9.20715 10.43582 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.007598 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.885741 B = 3684.250864 C = 5722.777880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.083 3.917 4 C -0.267 4.267 5 C -0.171 4.171 6 C 0.112 3.888 7 N -0.737 5.737 8 C 0.218 3.782 9 C -0.171 4.171 10 C -0.173 4.173 11 C -0.147 4.147 12 C -0.184 4.184 13 C -0.175 4.175 14 C 0.093 3.907 15 C -0.467 4.467 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.808 5.808 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.154 4.154 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.394 0.606 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.276 0.724 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 9.301 1.849 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.247 6.247 3 C 0.039 3.961 4 C -0.288 4.288 5 C -0.193 4.193 6 C 0.013 3.987 7 N -0.372 5.372 8 C 0.130 3.870 9 C -0.229 4.229 10 C -0.231 4.231 11 C -0.166 4.166 12 C -0.221 4.221 13 C -0.213 4.213 14 C 0.089 3.911 15 C -0.498 4.498 16 H 0.090 0.910 17 C -0.141 4.141 18 N -0.436 5.436 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.175 4.175 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.230 0.770 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.890 9.018 1.669 10.394 hybrid contribution 0.987 0.135 -0.144 1.006 sum -3.903 9.154 1.525 10.067 Atomic orbital electron populations 1.22691 0.81318 1.01522 1.00194 1.86001 1.18980 1.29215 1.90471 1.18853 0.92468 0.82399 1.02353 1.20282 0.96933 0.92336 1.19237 1.20367 0.92770 0.96128 1.10072 1.17887 0.90980 0.85204 1.04603 1.44028 1.07608 1.00997 1.84528 1.19314 0.89941 0.83827 0.93947 1.22481 1.00790 1.01642 0.97955 1.22625 1.00507 1.01400 0.98605 1.22454 1.00778 0.90109 1.03229 1.23139 1.03019 1.03397 0.92505 1.22912 1.00530 0.98218 0.99611 1.16975 0.92879 0.88402 0.92881 1.19056 0.90801 1.11026 1.28966 0.90987 1.25738 1.00379 0.94296 0.93694 1.69822 1.37342 1.13768 1.22619 0.86347 0.82956 0.79261 0.78205 1.19655 1.20561 1.19021 1.20363 0.89111 0.98707 1.09304 0.94020 0.93981 0.90227 0.89000 0.86899 0.77011 0.90409 0.93182 0.92455 0.92364 0.93143 0.90711 0.87646 0.88083 0.89332 0.89138 0.88776 0.91313 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.81 101.05 0.99 1.65 16 2 O -0.33 -7.60 10.49 -19.61 -0.21 -7.80 16 3 C 0.08 2.07 6.67 -39.29 -0.26 1.81 16 4 C -0.27 -6.04 9.03 -39.20 -0.35 -6.39 16 5 C -0.17 -3.73 7.03 -39.46 -0.28 -4.01 16 6 C 0.11 2.61 6.27 -83.24 -0.52 2.09 16 7 N -0.74 -14.67 5.15 -45.54 -0.23 -14.90 16 8 C 0.22 3.49 0.92 -131.82 -0.12 3.37 16 9 C -0.17 -2.72 8.06 37.16 0.30 -2.42 16 10 C -0.17 -2.59 6.93 37.16 0.26 -2.33 16 11 C -0.15 -2.02 5.33 -90.62 -0.48 -2.50 16 12 C -0.18 -2.15 9.52 -26.73 -0.25 -2.40 16 13 C -0.18 -1.97 9.32 -26.73 -0.25 -2.22 16 14 C 0.09 2.45 5.51 -106.65 -0.59 1.86 16 15 C -0.47 -12.14 8.32 -37.90 -0.32 -12.46 16 16 H 0.07 1.78 6.93 -52.49 -0.36 1.41 16 17 C 0.07 1.89 5.31 -17.33 -0.09 1.80 16 18 N -0.81 -21.73 10.99 55.55 0.61 -21.12 16 19 Si 0.91 19.21 29.56 -169.99 -5.03 14.18 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.15 -4.16 8.54 -38.80 -0.33 -4.49 16 24 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 25 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.83 6.26 -52.49 -0.33 1.51 16 28 H 0.11 2.17 3.10 -52.48 -0.16 2.01 16 29 H 0.39 7.96 6.80 -40.82 -0.28 7.68 16 30 H 0.08 1.35 4.66 -51.93 -0.24 1.10 16 31 H 0.05 0.66 6.81 -51.93 -0.35 0.31 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 34 H 0.05 0.63 6.80 -51.93 -0.35 0.28 16 35 H 0.07 1.22 4.85 -51.93 -0.25 0.97 16 36 H 0.11 1.50 8.07 -51.93 -0.42 1.08 16 37 H 0.10 1.17 5.83 -51.93 -0.30 0.86 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.01 7.02 -51.92 -0.36 0.65 16 41 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 42 H 0.12 3.57 6.50 -52.49 -0.34 3.23 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -28.35 321.43 -8.08 -36.44 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -5.77 Total: 14.99 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.30 Total: -26.64 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.38 Total: -36.02 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.21 Total: -7.80 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.35 -8.08 -36.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162522223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.745 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds