Wall clock time and date at job start Mon Mar 30 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35960 * 117.00086 * 2 1 4 4 C 1.39420 * 119.81911 * 0.02562 * 3 2 1 5 5 C 1.38086 * 120.56613 * 179.70146 * 4 3 2 6 6 C 1.38726 * 120.20579 * 0.27160 * 5 4 3 7 7 N 1.38855 * 120.18105 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00385 * 354.51844 * 7 6 5 9 9 C 1.53007 * 109.46840 * 304.54608 * 8 7 6 10 10 C 1.53003 * 109.47139 * 64.54426 * 8 7 6 11 11 C 1.53000 * 109.47254 * 184.54741 * 8 7 6 12 12 C 1.53005 * 117.49883 * 243.61781 * 11 8 7 13 13 C 1.52998 * 60.00009 * 252.51131 * 12 11 8 14 14 C 1.41540 * 119.63374 * 0.02562 * 6 5 4 15 15 C 1.41032 * 120.27590 * 180.02562 * 14 6 5 16 16 H 1.07995 * 119.99763 * 34.90049 * 15 14 6 17 17 C 1.39902 * 119.99602 * 214.91253 * 15 14 6 18 18 N 1.30889 * 120.00207 * 5.06556 * 17 15 14 19 19 Si 1.86806 * 119.99603 * 185.06756 * 17 15 14 20 20 H 1.48497 * 109.47022 * 89.99514 * 19 17 15 21 21 H 1.48499 * 109.46985 * 209.99647 * 19 17 15 22 22 H 1.48507 * 109.47133 * 329.99820 * 19 17 15 23 23 C 1.37840 * 119.82034 * 180.25818 * 3 2 1 24 24 H 1.08998 * 109.46370 * 299.99276 * 1 2 3 25 25 H 1.09000 * 109.47085 * 59.99626 * 1 2 3 26 26 H 1.08997 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.71268 * 359.97140 * 4 3 2 28 28 H 1.08005 * 119.90236 * 180.29347 * 5 4 3 29 29 H 0.97005 * 119.99791 * 174.51373 * 7 6 5 30 30 H 1.08997 * 109.47109 * 64.99856 * 9 8 7 31 31 H 1.09003 * 109.46987 * 184.99350 * 9 8 7 32 32 H 1.08998 * 109.47318 * 304.99431 * 9 8 7 33 33 H 1.08993 * 109.47066 * 55.04017 * 10 8 7 34 34 H 1.09007 * 109.46735 * 175.03498 * 10 8 7 35 35 H 1.08999 * 109.47167 * 295.03706 * 10 8 7 36 36 H 1.08996 * 115.54851 * 29.33236 * 11 8 7 37 37 H 1.09002 * 117.49776 * 0.02562 * 12 11 8 38 38 H 1.08998 * 117.49489 * 145.01733 * 12 11 8 39 39 H 1.09001 * 117.50049 * 252.50847 * 13 12 11 40 40 H 1.09007 * 117.49854 * 107.49006 * 13 12 11 41 41 H 0.97005 * 120.00077 * 180.02562 * 18 17 15 42 42 H 1.07996 * 120.10736 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8941 3.6167 0.0067 6 6 3.2781 3.7123 0.0068 7 7 3.8918 4.9579 0.0136 8 6 3.0827 6.1738 -0.1005 9 6 2.2241 6.0982 -1.3647 10 6 2.1757 6.2997 1.1252 11 6 4.0032 7.3932 -0.1813 12 6 3.9231 8.4153 0.9544 13 6 3.3509 8.7559 -0.4230 14 6 4.0611 2.5332 0.0000 15 6 5.4690 2.6147 0.0005 16 1 5.9638 3.4085 0.5403 17 6 6.2247 1.6672 -0.6984 18 7 5.6255 0.7650 -1.4333 19 14 8.0891 1.6898 -0.5828 20 1 8.5251 0.8359 0.5511 21 1 8.6697 1.1692 -1.8465 22 1 8.5544 3.0826 -0.3610 23 6 3.4230 1.2792 -0.0054 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2053 2.3130 0.0005 28 1 1.2926 4.5137 0.0119 29 1 4.8563 5.0229 0.0940 30 1 1.5073 5.2827 -1.2689 31 1 1.6890 7.0386 -1.4973 32 1 2.8643 5.9196 -2.2286 33 1 2.7815 6.2649 2.0306 34 1 1.6384 7.2473 1.0838 35 1 1.4609 5.4769 1.1344 36 1 4.9799 7.2159 -0.6314 37 1 3.2149 8.2187 1.7594 38 1 4.8475 8.9104 1.2519 39 1 3.8987 9.4753 -1.0318 40 1 2.2659 8.7837 -0.5245 41 1 6.1494 0.1078 -1.9176 42 1 4.0101 0.3727 -0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162522223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:31 Heat of formation + Delta-G solvation = 8.514942 kcal Electronic energy + Delta-G solvation = -21869.901909 eV Core-core repulsion = 18815.797376 eV Total energy + Delta-G solvation = -3054.104533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86601 -39.85497 -38.12133 -35.77109 -34.73182 -32.28662 -30.94989 -29.43900 -28.23200 -27.56216 -26.85439 -24.19808 -23.02978 -22.93059 -21.63656 -19.82841 -19.37185 -18.07227 -17.56359 -17.20734 -16.58780 -16.24186 -16.09575 -15.68375 -15.23893 -14.80317 -14.55729 -14.34629 -14.00651 -13.70648 -13.37214 -13.20501 -13.07810 -12.84919 -12.84258 -12.63249 -12.39550 -12.28323 -12.24058 -12.07824 -11.82542 -11.60502 -11.48201 -11.19243 -10.98054 -10.87921 -10.78167 -9.94667 -9.16202 -8.46631 -7.65962 -6.11067 1.03143 1.36666 1.39085 1.49809 1.53489 2.26328 2.77692 2.87552 2.96650 3.17474 3.72326 3.80743 4.08765 4.16746 4.24066 4.36456 4.42371 4.51421 4.55183 4.57276 4.61349 4.76244 4.80584 4.82187 4.88023 4.99341 5.07169 5.09748 5.12875 5.18157 5.30023 5.34124 5.35540 5.51993 5.54823 5.66077 5.80338 5.90471 6.07669 6.25022 6.44440 6.90401 7.04000 7.08313 7.33150 7.42521 8.54761 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.007598 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.885741 B = 3684.250864 C = 5722.777880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.068 3.932 4 C -0.260 4.260 5 C -0.171 4.171 6 C 0.114 3.886 7 N -0.737 5.737 8 C 0.212 3.788 9 C -0.167 4.167 10 C -0.167 4.167 11 C -0.171 4.171 12 C -0.176 4.176 13 C -0.156 4.156 14 C 0.057 3.943 15 C -0.489 4.489 16 H 0.076 0.924 17 C 0.027 3.973 18 N -0.849 5.849 19 Si 0.979 3.021 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.255 1.255 23 C -0.185 4.185 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.389 0.611 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.278 0.722 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 11.907 2.207 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.023 3.977 4 C -0.280 4.280 5 C -0.194 4.194 6 C 0.013 3.987 7 N -0.370 5.370 8 C 0.126 3.874 9 C -0.225 4.225 10 C -0.225 4.225 11 C -0.190 4.190 12 C -0.213 4.213 13 C -0.193 4.193 14 C 0.053 3.947 15 C -0.521 4.521 16 H 0.094 0.906 17 C -0.184 4.184 18 N -0.478 5.478 19 Si 0.801 3.199 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.179 1.179 23 C -0.206 4.206 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.141 0.859 28 H 0.162 0.838 29 H 0.224 0.776 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.066 11.660 2.034 13.300 hybrid contribution 1.179 -0.632 -0.241 1.359 sum -4.887 11.028 1.794 12.195 Atomic orbital electron populations 1.23062 0.78141 1.04138 1.01188 1.85952 1.22314 1.28634 1.90435 1.18932 0.92100 0.83903 1.02743 1.20661 0.98436 0.91699 1.17219 1.20768 0.92513 0.97226 1.08908 1.18005 0.91582 0.85716 1.03397 1.44237 1.07806 1.01273 1.83697 1.19577 0.90273 0.83068 0.94514 1.22436 1.00206 1.02721 0.97092 1.22546 0.99912 1.02451 0.97579 1.22311 1.00349 0.90348 1.05995 1.23217 1.03664 1.01836 0.92580 1.23031 1.01222 0.95953 0.99114 1.17322 0.93712 0.89425 0.94274 1.19300 0.91300 1.11789 1.29663 0.90580 1.26615 1.05151 0.93629 0.92988 1.69950 1.39125 1.14801 1.23908 0.85255 0.76914 0.79635 0.78129 1.19386 1.20153 1.17868 1.20279 0.90402 0.98043 1.11886 0.92637 0.93114 0.87032 0.85893 0.83771 0.77624 0.91903 0.89936 0.94344 0.92936 0.90016 0.92111 0.88824 0.87675 0.88370 0.87721 0.87615 0.91222 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.81 113.37 1.11 2.06 16 2 O -0.36 -16.62 10.49 -93.09 -0.98 -17.59 16 3 C 0.07 3.45 6.67 22.46 0.15 3.60 16 4 C -0.26 -11.54 9.03 22.52 0.20 -11.34 16 5 C -0.17 -7.36 7.03 22.35 0.16 -7.20 16 6 C 0.11 5.37 6.27 38.96 0.24 5.61 16 7 N -0.74 -29.34 5.15 -298.00 -1.53 -30.88 16 8 C 0.21 6.42 0.92 3.61 0.00 6.43 16 9 C -0.17 -4.96 8.06 71.98 0.58 -4.38 16 10 C -0.17 -4.53 6.93 71.98 0.50 -4.03 16 11 C -0.17 -4.32 5.33 -10.79 -0.06 -4.38 16 12 C -0.18 -3.54 9.52 30.60 0.29 -3.25 16 13 C -0.16 -2.90 9.32 30.59 0.29 -2.61 16 14 C 0.06 3.15 5.51 -21.18 -0.12 3.03 16 15 C -0.49 -26.54 8.32 23.36 0.19 -26.35 16 16 H 0.08 3.90 6.93 -2.91 -0.02 3.88 16 17 C 0.03 1.44 5.31 85.24 0.45 1.89 16 18 N -0.85 -48.19 10.99 21.82 0.24 -47.95 16 19 Si 0.98 40.62 29.56 68.60 2.03 42.65 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.18 -10.57 8.54 22.78 0.19 -10.38 16 24 H 0.06 1.62 7.65 -2.39 -0.02 1.60 16 25 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 26 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.12 4.59 6.26 -2.91 -0.02 4.58 16 28 H 0.15 5.24 3.10 -2.91 -0.01 5.23 16 29 H 0.39 16.00 6.80 -92.70 -0.63 15.37 16 30 H 0.06 2.04 4.66 -2.39 -0.01 2.03 16 31 H 0.08 1.89 6.81 -2.39 -0.02 1.87 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.49 7.56 -2.39 -0.02 1.47 16 34 H 0.08 1.70 6.80 -2.38 -0.02 1.69 16 35 H 0.06 1.82 4.85 -2.39 -0.01 1.80 16 36 H 0.09 2.58 8.07 -2.39 -0.02 2.56 16 37 H 0.11 2.04 5.83 -2.39 -0.01 2.03 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.11 1.74 7.02 -2.38 -0.02 1.73 16 41 H 0.28 14.58 8.30 -92.70 -0.77 13.81 16 42 H 0.09 5.67 6.50 -2.91 -0.02 5.65 16 Total: -1.00 -65.14 321.43 4.37 -60.77 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: 0.42 Total: 44.29 kcal Atomic # 6 Polarization: -55.48 SS G_CDS: 4.19 Total: -51.29 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.29 Total: -78.83 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.98 Total: -17.59 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -65.14 4.37 -60.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162522223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.289 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds