Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 N 1.46501 * 109.47584 * 120.00068 * 2 1 3 5 5 C 1.39944 * 119.99807 * 63.71561 * 4 2 1 6 6 C 1.38861 * 120.01906 * 179.97438 * 5 4 2 7 7 C 1.38103 * 119.97935 * 180.02562 * 6 5 4 8 8 C 1.38699 * 120.02388 * 0.02924 * 7 6 5 9 9 O 1.35995 * 119.98501 * 179.97438 * 8 7 6 10 10 C 1.42896 * 117.00404 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47622 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00533 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00154 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46781 * 90.00865 * 15 13 11 17 17 H 1.48503 * 109.47082 * 210.00313 * 15 13 11 18 18 H 1.48500 * 109.47493 * 330.00390 * 15 13 11 19 19 C 1.38705 * 120.03564 * 0.22870 * 8 7 6 20 20 C 1.38106 * 120.01635 * 359.49124 * 19 8 7 21 21 C 1.53005 * 109.47134 * 240.00157 * 2 1 3 22 22 C 1.52999 * 117.49936 * 123.74552 * 21 2 1 23 23 C 1.53001 * 117.49770 * 55.08323 * 21 2 1 24 24 H 1.09007 * 109.47164 * 306.19874 * 1 2 3 25 25 H 1.09001 * 109.47345 * 66.19687 * 1 2 3 26 26 H 1.09005 * 109.47189 * 186.20042 * 1 2 3 27 27 H 1.08997 * 109.47425 * 176.11247 * 3 2 1 28 28 H 1.09003 * 109.46866 * 296.11282 * 3 2 1 29 29 H 1.08999 * 109.47027 * 56.11090 * 3 2 1 30 30 H 0.96999 * 120.00279 * 243.72339 * 4 2 1 31 31 H 1.08006 * 120.00730 * 0.05124 * 6 5 4 32 32 H 1.08007 * 119.98698 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.47132 * 300.00190 * 10 9 8 34 34 H 1.09001 * 109.47432 * 60.00011 * 10 9 8 35 35 H 0.96995 * 120.00292 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.99064 * 179.71974 * 19 8 7 37 37 H 1.07998 * 120.01204 * 180.25645 * 20 19 8 38 38 H 1.08998 * 115.54637 * 269.41941 * 21 2 1 39 39 H 1.08993 * 117.49772 * 359.97438 * 22 21 2 40 40 H 1.08998 * 117.49330 * 145.02507 * 22 21 2 41 41 H 1.08996 * 117.49544 * 214.98332 * 23 21 2 42 42 H 1.08998 * 117.49738 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7457 -2.0510 1.3790 6 6 2.2089 -2.7061 2.5123 7 6 1.9398 -4.0487 2.6917 8 6 1.2075 -4.7430 1.7401 9 8 0.9434 -6.0652 1.9173 10 6 0.1846 -6.7176 0.8973 11 6 -0.0080 -8.1667 1.2635 12 1 0.4073 -8.5509 2.1836 13 6 -0.7151 -9.0018 0.4247 14 7 -1.2212 -8.5338 -0.6954 15 14 -0.9532 -10.7981 0.8784 16 1 -2.2000 -10.9473 1.6711 17 1 -1.0532 -11.6123 -0.3595 18 1 0.2044 -11.2628 1.6843 19 6 0.7490 -4.0906 0.6051 20 6 1.0123 -2.7467 0.4269 21 6 2.0400 -0.7212 -1.2493 22 6 2.9862 0.0487 -2.1727 23 6 1.5430 -0.2199 -2.6068 24 1 -0.3634 0.6070 0.8293 25 1 -0.3634 0.4148 -0.9402 26 1 -0.3634 -1.0217 0.1110 27 1 3.1278 1.4432 0.0697 28 1 1.7347 1.9358 -0.9228 29 1 1.6209 1.9760 0.8531 30 1 2.5307 -0.2050 1.8614 31 1 2.7791 -2.1657 3.2535 32 1 2.3003 -4.5585 3.5730 33 1 -0.7881 -6.2347 0.8030 34 1 0.7172 -6.6500 -0.0513 35 1 -1.7184 -9.1213 -1.2857 36 1 0.1828 -4.6330 -0.1376 37 1 0.6517 -2.2378 -0.4548 38 1 2.2060 -1.7928 -1.1386 39 1 3.2451 1.0691 -1.8904 40 1 3.7746 -0.5165 -2.6698 41 1 1.3827 -0.9616 -3.3891 42 1 0.8532 0.6239 -2.6098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162522481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = 17.510552 kcal Electronic energy + Delta-G solvation = -21058.458339 eV Core-core repulsion = 18004.743885 eV Total energy + Delta-G solvation = -3053.714454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12657 -38.68435 -36.68825 -34.49879 -32.82773 -31.19013 -30.60702 -28.06420 -27.77490 -26.43046 -24.04021 -23.22793 -22.32735 -21.52593 -20.88040 -19.04409 -17.41146 -16.82494 -16.49836 -16.23809 -15.33411 -14.70131 -14.60137 -14.41042 -14.11596 -13.91479 -13.27470 -13.14813 -12.76520 -12.61681 -12.54387 -12.32604 -12.12195 -11.88161 -11.57389 -11.48056 -11.35259 -11.07490 -10.92851 -10.84453 -10.60774 -10.28029 -10.25117 -10.08507 -9.91256 -9.17171 -8.97230 -8.49379 -8.40346 -6.55214 -6.18988 -4.21871 1.85841 2.24141 3.27530 3.32466 3.37743 3.44068 3.78751 4.25980 4.37730 4.48064 4.71418 4.72325 4.87306 4.91153 5.04193 5.18013 5.18070 5.38652 5.42029 5.43898 5.48360 5.55197 5.64292 5.73370 5.79577 5.89444 5.91988 5.99463 6.01216 6.08434 6.19087 6.26313 6.49582 6.67480 6.75827 6.92249 7.14834 7.24731 7.25955 7.67577 7.75709 8.00540 8.05364 8.63983 8.94706 9.43258 10.92392 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.003619 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.270837 B = 7734.931917 C = 8365.592567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 C -0.154 4.154 4 N -0.745 5.745 5 C 0.161 3.839 6 C -0.157 4.157 7 C -0.125 4.125 8 C 0.102 3.898 9 O -0.324 6.324 10 C 0.195 3.805 11 C -0.522 4.522 12 H 0.069 0.931 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.912 3.088 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.169 4.169 20 C -0.163 4.163 21 C -0.170 4.170 22 C -0.184 4.184 23 C -0.177 4.177 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.393 0.607 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 20.431 -0.730 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.127 3.873 3 C -0.211 4.211 4 N -0.379 5.379 5 C 0.062 3.938 6 C -0.180 4.180 7 C -0.144 4.144 8 C 0.054 3.946 9 O -0.237 6.237 10 C 0.122 3.878 11 C -0.560 4.560 12 H 0.088 0.912 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.739 3.261 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.188 4.188 20 C -0.185 4.185 21 C -0.189 4.189 22 C -0.221 4.221 23 C -0.214 4.214 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.227 0.773 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.961 20.261 -0.900 21.139 hybrid contribution -0.133 -0.743 0.046 0.756 sum 5.828 19.518 -0.854 20.388 Atomic orbital electron populations 1.22471 0.95053 1.03837 1.01659 1.19488 0.93182 0.90735 0.83944 1.22123 1.01596 0.94888 1.02521 1.44515 1.62799 1.06879 1.23685 1.17518 0.97471 0.84103 0.94717 1.20232 1.05617 0.94226 0.97879 1.20141 1.01519 0.93345 0.99439 1.19069 0.96217 0.85400 0.93960 1.86096 1.70450 1.17675 1.49504 1.20535 0.89659 0.92095 0.85494 1.21009 1.34837 0.92642 1.07470 0.91242 1.24931 0.95077 0.99601 0.94643 1.69954 1.35730 1.36392 1.11332 0.86270 0.78795 0.83148 0.77925 1.20336 1.20966 1.19514 1.21291 1.03738 0.95056 0.98729 1.20846 1.03334 0.94187 1.00155 1.23079 1.04058 1.01067 0.90688 1.23130 0.93348 1.01598 1.04036 1.22971 0.97199 1.03462 0.97774 0.92520 0.92001 0.90605 0.91765 0.91136 0.92120 0.77287 0.86581 0.85922 0.96405 0.96410 0.92444 0.85183 0.85095 0.86084 0.88452 0.89168 0.88715 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 8.22 37.15 0.31 -1.50 16 2 C 0.21 2.15 0.92 -131.82 -0.12 2.03 16 3 C -0.15 -1.16 7.17 37.16 0.27 -0.90 16 4 N -0.75 -8.52 5.26 -45.94 -0.24 -8.76 16 5 C 0.16 2.38 6.17 -83.69 -0.52 1.87 16 6 C -0.16 -2.39 9.89 -39.40 -0.39 -2.78 16 7 C -0.13 -2.26 9.98 -39.46 -0.39 -2.65 16 8 C 0.10 2.18 6.69 -39.24 -0.26 1.91 16 9 O -0.32 -8.20 10.12 -19.73 -0.20 -8.40 16 10 C 0.19 5.36 4.49 36.00 0.16 5.53 16 11 C -0.52 -15.29 9.43 -34.44 -0.32 -15.61 16 12 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 15 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.17 -3.35 9.03 -39.46 -0.36 -3.70 16 20 C -0.16 -2.68 6.46 -39.40 -0.25 -2.94 16 21 C -0.17 -1.84 4.06 -90.62 -0.37 -2.21 16 22 C -0.18 -1.68 9.52 -26.69 -0.25 -1.94 16 23 C -0.18 -1.64 9.31 -26.69 -0.25 -1.88 16 24 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.06 0.56 6.78 -51.93 -0.35 0.21 16 26 H 0.08 0.96 5.14 -51.93 -0.27 0.69 16 27 H 0.06 0.47 7.48 -51.93 -0.39 0.08 16 28 H 0.07 0.48 6.88 -51.93 -0.36 0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.39 3.79 8.49 -40.82 -0.35 3.44 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 33 H 0.02 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.02 0.51 7.65 -51.93 -0.40 0.11 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.13 2.73 6.29 -52.49 -0.33 2.40 16 37 H 0.13 1.94 3.95 -52.49 -0.21 1.73 16 38 H 0.12 1.63 5.53 -51.93 -0.29 1.34 16 39 H 0.10 0.76 5.83 -51.93 -0.30 0.45 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.76 7.02 -51.93 -0.36 0.39 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -30.54 329.83 -8.69 -39.23 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.08 Total: 5.18 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.85 Total: -23.18 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.49 Total: -34.41 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.20 Total: -8.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.54 -8.69 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162522481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.737 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds