Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 N 1.46501 * 109.47584 * 120.00068 * 2 1 3 5 5 C 1.39944 * 119.99807 * 63.71561 * 4 2 1 6 6 C 1.38861 * 120.01906 * 179.97438 * 5 4 2 7 7 C 1.38103 * 119.97935 * 180.02562 * 6 5 4 8 8 C 1.38699 * 120.02388 * 0.02924 * 7 6 5 9 9 O 1.35995 * 119.98501 * 179.97438 * 8 7 6 10 10 C 1.42896 * 117.00404 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47622 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00533 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00154 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46781 * 90.00865 * 15 13 11 17 17 H 1.48503 * 109.47082 * 210.00313 * 15 13 11 18 18 H 1.48500 * 109.47493 * 330.00390 * 15 13 11 19 19 C 1.38705 * 120.03564 * 0.22870 * 8 7 6 20 20 C 1.38106 * 120.01635 * 359.49124 * 19 8 7 21 21 C 1.53005 * 109.47134 * 240.00157 * 2 1 3 22 22 C 1.52999 * 117.49936 * 123.74552 * 21 2 1 23 23 C 1.53001 * 117.49770 * 55.08323 * 21 2 1 24 24 H 1.09007 * 109.47164 * 306.19874 * 1 2 3 25 25 H 1.09001 * 109.47345 * 66.19687 * 1 2 3 26 26 H 1.09005 * 109.47189 * 186.20042 * 1 2 3 27 27 H 1.08997 * 109.47425 * 176.11247 * 3 2 1 28 28 H 1.09003 * 109.46866 * 296.11282 * 3 2 1 29 29 H 1.08999 * 109.47027 * 56.11090 * 3 2 1 30 30 H 0.96999 * 120.00279 * 243.72339 * 4 2 1 31 31 H 1.08006 * 120.00730 * 0.05124 * 6 5 4 32 32 H 1.08007 * 119.98698 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.47132 * 300.00190 * 10 9 8 34 34 H 1.09001 * 109.47432 * 60.00011 * 10 9 8 35 35 H 0.96995 * 120.00292 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.99064 * 179.71974 * 19 8 7 37 37 H 1.07998 * 120.01204 * 180.25645 * 20 19 8 38 38 H 1.08998 * 115.54637 * 269.41941 * 21 2 1 39 39 H 1.08993 * 117.49772 * 359.97438 * 22 21 2 40 40 H 1.08998 * 117.49330 * 145.02507 * 22 21 2 41 41 H 1.08996 * 117.49544 * 214.98332 * 23 21 2 42 42 H 1.08998 * 117.49738 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7457 -2.0510 1.3790 6 6 2.2089 -2.7061 2.5123 7 6 1.9398 -4.0487 2.6917 8 6 1.2075 -4.7430 1.7401 9 8 0.9434 -6.0652 1.9173 10 6 0.1846 -6.7176 0.8973 11 6 -0.0080 -8.1667 1.2635 12 1 0.4073 -8.5509 2.1836 13 6 -0.7151 -9.0018 0.4247 14 7 -1.2212 -8.5338 -0.6954 15 14 -0.9532 -10.7981 0.8784 16 1 -2.2000 -10.9473 1.6711 17 1 -1.0532 -11.6123 -0.3595 18 1 0.2044 -11.2628 1.6843 19 6 0.7490 -4.0906 0.6051 20 6 1.0123 -2.7467 0.4269 21 6 2.0400 -0.7212 -1.2493 22 6 2.9862 0.0487 -2.1727 23 6 1.5430 -0.2199 -2.6068 24 1 -0.3634 0.6070 0.8293 25 1 -0.3634 0.4148 -0.9402 26 1 -0.3634 -1.0217 0.1110 27 1 3.1278 1.4432 0.0697 28 1 1.7347 1.9358 -0.9228 29 1 1.6209 1.9760 0.8531 30 1 2.5307 -0.2050 1.8614 31 1 2.7791 -2.1657 3.2535 32 1 2.3003 -4.5585 3.5730 33 1 -0.7881 -6.2347 0.8030 34 1 0.7172 -6.6500 -0.0513 35 1 -1.7184 -9.1213 -1.2857 36 1 0.1828 -4.6330 -0.1376 37 1 0.6517 -2.2378 -0.4548 38 1 2.2060 -1.7928 -1.1386 39 1 3.2451 1.0691 -1.8904 40 1 3.7746 -0.5165 -2.6698 41 1 1.3827 -0.9616 -3.3891 42 1 0.8532 0.6239 -2.6098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162522481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = -0.340039 kcal Electronic energy + Delta-G solvation = -21059.232399 eV Core-core repulsion = 18004.743885 eV Total energy + Delta-G solvation = -3054.488514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27690 -40.05182 -38.12436 -35.62993 -34.94857 -32.30025 -31.97843 -29.91709 -28.80324 -27.74424 -25.38697 -24.80127 -23.05950 -22.90057 -22.37775 -19.97944 -19.11152 -18.34859 -17.93739 -17.60717 -16.64741 -16.36099 -16.29461 -15.78057 -15.34009 -15.13019 -14.61883 -14.35525 -14.08061 -13.86672 -13.61446 -13.43626 -13.22137 -13.16311 -12.99652 -12.87546 -12.69872 -12.47443 -12.25779 -12.23036 -11.97139 -11.83325 -11.52823 -11.31950 -11.12692 -10.84072 -10.73409 -10.23300 -9.84069 -8.38794 -7.90294 -6.53353 0.45739 0.78925 1.38396 1.41973 1.54077 2.29320 2.49251 2.90276 2.94541 2.97586 2.99416 3.67581 3.97040 3.99294 4.06356 4.11262 4.13250 4.33071 4.43256 4.48978 4.53851 4.62136 4.76278 4.77207 4.78697 4.91143 4.94003 4.98623 4.99632 5.08250 5.12120 5.22118 5.28419 5.33134 5.34898 5.38781 5.44538 5.48718 5.64992 5.82545 5.88510 6.46681 6.56668 6.91241 7.05543 7.20083 8.73789 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.003619 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.270837 B = 7734.931917 C = 8365.592567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 C -0.149 4.149 4 N -0.731 5.731 5 C 0.182 3.818 6 C -0.150 4.150 7 C -0.122 4.122 8 C 0.047 3.953 9 O -0.345 6.345 10 C 0.216 3.784 11 C -0.558 4.558 12 H 0.066 0.934 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.990 3.010 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.263 1.263 19 C -0.183 4.183 20 C -0.163 4.163 21 C -0.190 4.190 22 C -0.172 4.172 23 C -0.173 4.173 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.407 0.593 31 H 0.158 0.842 32 H 0.134 0.866 33 H -0.005 1.005 34 H -0.006 1.006 35 H 0.274 0.726 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.020 22.718 -0.106 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.125 3.875 3 C -0.206 4.206 4 N -0.363 5.363 5 C 0.079 3.921 6 C -0.172 4.172 7 C -0.141 4.141 8 C 0.000 4.000 9 O -0.260 6.260 10 C 0.143 3.857 11 C -0.595 4.595 12 H 0.084 0.916 13 C -0.189 4.189 14 N -0.565 5.565 15 Si 0.812 3.188 16 H -0.191 1.191 17 H -0.196 1.196 18 H -0.187 1.187 19 C -0.203 4.203 20 C -0.185 4.185 21 C -0.209 4.209 22 C -0.209 4.209 23 C -0.210 4.210 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.244 0.756 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.162 0.838 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.897 22.621 -0.276 23.651 hybrid contribution -0.367 -1.202 -0.208 1.274 sum 6.530 21.419 -0.484 22.398 Atomic orbital electron populations 1.22469 0.95403 1.02310 1.02882 1.19668 0.92906 0.92212 0.82748 1.22101 1.02081 0.92555 1.03839 1.44623 1.61869 1.05342 1.24515 1.17610 0.95232 0.85617 0.93591 1.20610 1.04946 0.93066 0.98563 1.20387 1.00410 0.94471 0.98819 1.19484 0.99859 0.84248 0.96380 1.86001 1.70982 1.20167 1.48813 1.20037 0.88494 0.91924 0.85290 1.21353 1.36327 0.93782 1.08062 0.91588 1.26007 0.93904 1.04869 0.94141 1.70070 1.35736 1.38503 1.12232 0.85088 0.79198 0.76365 0.78189 1.19052 1.19627 1.18725 1.21166 1.04445 0.96552 0.98099 1.20933 1.03592 0.92776 1.01247 1.22961 1.06304 0.99670 0.92010 1.23213 0.92954 1.02209 1.02487 1.23041 0.97967 1.03650 0.96363 0.91753 0.90477 0.93364 0.90974 0.89743 0.90985 0.75574 0.82436 0.84797 0.98762 0.98793 0.91756 0.88035 0.83832 0.89305 0.86285 0.89639 0.89495 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 8.22 71.98 0.59 -2.68 16 2 C 0.21 3.68 0.92 3.60 0.00 3.68 16 3 C -0.15 -1.61 7.17 71.98 0.52 -1.09 16 4 N -0.73 -14.60 5.26 -299.27 -1.58 -16.17 16 5 C 0.18 5.13 6.17 38.14 0.24 5.37 16 6 C -0.15 -4.26 9.89 22.39 0.22 -4.04 16 7 C -0.12 -4.42 9.98 22.35 0.22 -4.20 16 8 C 0.05 2.13 6.69 22.49 0.15 2.28 16 9 O -0.34 -18.82 10.12 -93.50 -0.95 -19.77 16 10 C 0.22 12.90 4.49 71.23 0.32 13.22 16 11 C -0.56 -34.33 9.43 25.60 0.24 -34.09 16 12 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 13 C 0.01 0.58 5.46 84.65 0.46 1.05 16 14 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 15 Si 0.99 44.85 29.54 68.60 2.03 46.88 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 19 C -0.18 -7.88 9.03 22.35 0.20 -7.68 16 20 C -0.16 -5.54 6.46 22.39 0.14 -5.40 16 21 C -0.19 -3.84 4.06 -10.79 -0.04 -3.89 16 22 C -0.17 -2.72 9.52 30.62 0.29 -2.43 16 23 C -0.17 -2.90 9.31 30.62 0.29 -2.61 16 24 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.08 1.22 6.78 -2.39 -0.02 1.20 16 26 H 0.05 1.19 5.14 -2.38 -0.01 1.18 16 27 H 0.07 0.71 7.48 -2.39 -0.02 0.69 16 28 H 0.08 0.73 6.88 -2.39 -0.02 0.72 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.41 6.13 8.49 -92.71 -0.79 5.34 16 31 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 33 H -0.01 -0.33 7.67 -2.38 -0.02 -0.35 16 34 H -0.01 -0.35 7.65 -2.39 -0.02 -0.37 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.10 4.83 6.29 -2.91 -0.02 4.81 16 37 H 0.14 4.43 3.95 -2.91 -0.01 4.42 16 38 H 0.09 2.41 5.53 -2.39 -0.01 2.40 16 39 H 0.12 1.37 5.83 -2.39 -0.01 1.36 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 1.47 7.02 -2.39 -0.02 1.45 16 Total: -1.00 -70.47 329.83 3.88 -66.59 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.24 Total: 21.13 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.84 Total: -42.50 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.29 Total: -72.33 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.95 Total: -19.77 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -70.47 3.88 -66.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162522481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.253 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds