Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35997 * 116.99827 * 2 1 4 4 C 1.38730 * 119.98379 * 359.97438 * 3 2 1 5 5 C 1.38087 * 120.01931 * 180.02562 * 4 3 2 6 6 C 1.38885 * 119.98100 * 359.97438 * 5 4 3 7 7 N 1.39938 * 120.01884 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99821 * 359.97438 * 7 6 5 9 9 H 1.08998 * 109.41553 * 35.13657 * 8 7 6 10 10 C 1.52955 * 109.41104 * 155.00252 * 8 7 6 11 11 C 1.53233 * 109.40144 * 183.63220 * 10 8 7 12 12 C 1.51266 * 108.69594 * 305.27439 * 11 10 8 13 13 C 1.37880 * 120.85369 * 231.42222 * 12 11 10 14 14 N 1.31516 * 119.99330 * 359.97438 * 13 12 11 15 15 Si 1.86796 * 120.00384 * 180.02562 * 13 12 11 16 16 H 1.48495 * 109.47360 * 89.99849 * 15 13 12 17 17 H 1.48505 * 109.47069 * 210.00027 * 15 13 12 18 18 H 1.48505 * 109.47051 * 329.99565 * 15 13 12 19 19 C 1.51663 * 118.04935 * 51.26381 * 12 11 10 20 20 C 1.52965 * 109.35315 * 275.31717 * 8 7 6 21 21 C 1.38839 * 119.95957 * 0.27353 * 6 5 4 22 22 C 1.50705 * 120.00617 * 179.72596 * 21 6 5 23 23 C 1.38130 * 119.98178 * 359.42975 * 21 6 5 24 24 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47272 * 300.00134 * 1 2 3 26 26 H 1.09009 * 109.46834 * 59.99963 * 1 2 3 27 27 H 1.07994 * 119.98416 * 359.97325 * 4 3 2 28 28 H 1.07997 * 120.00728 * 179.97438 * 5 4 3 29 29 H 0.96995 * 120.00033 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.48361 * 63.65570 * 10 8 7 31 31 H 1.08999 * 109.49184 * 303.61467 * 10 8 7 32 32 H 1.09002 * 109.62728 * 65.08623 * 11 10 8 33 33 H 1.09001 * 109.62680 * 185.46410 * 11 10 8 34 34 H 0.97006 * 119.99639 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.55834 * 189.01867 * 19 12 11 36 36 H 1.08999 * 109.74924 * 68.61025 * 19 12 11 37 37 H 1.08997 * 109.48290 * 296.31187 * 20 8 7 38 38 H 1.08998 * 109.48095 * 56.34006 * 20 8 7 39 39 H 1.09006 * 109.47025 * 90.00073 * 22 21 6 40 40 H 1.09000 * 109.46888 * 209.99968 * 22 21 6 41 41 H 1.08998 * 109.46885 * 330.00234 * 22 21 6 42 42 H 1.07998 * 119.98894 * 180.27564 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2905 2.3750 -0.0005 5 6 1.9166 3.6058 -0.0011 6 6 3.3035 3.6789 -0.0005 7 7 3.9388 4.9258 -0.0005 8 6 3.1409 6.1544 -0.0017 9 1 2.2380 6.0007 0.5893 10 6 3.9600 7.2931 0.6081 11 6 3.0950 8.5553 0.6902 12 6 2.5447 8.8563 -0.6863 13 6 2.6810 10.1100 -1.2436 14 7 3.2955 11.0626 -0.5769 15 14 1.9917 10.4558 -2.9450 16 1 0.5911 10.9342 -2.8238 17 1 2.8148 11.4976 -3.6102 18 1 2.0213 9.2106 -3.7536 19 6 1.8434 7.7386 -1.4341 20 6 2.7538 6.5061 -1.4391 21 6 4.0592 2.5142 -0.0052 22 6 5.5642 2.5924 -0.0109 23 6 3.4313 1.2839 0.0015 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2121 2.3179 -0.0014 28 1 1.3279 4.5112 -0.0019 29 1 4.9074 4.9765 0.0002 30 1 4.8311 7.4895 -0.0169 31 1 4.2868 7.0107 1.6089 32 1 2.2719 8.3904 1.3856 33 1 3.7017 9.3933 1.0333 34 1 3.3911 11.9448 -0.9689 35 1 1.6467 8.0527 -2.4591 36 1 0.9031 7.4971 -0.9384 37 1 3.6534 6.7211 -2.0157 38 1 2.2256 5.6656 -1.8894 39 1 5.9310 2.6096 1.0155 40 1 5.9712 1.7232 -0.5276 41 1 5.8789 3.5008 -0.5245 42 1 4.0191 0.3779 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = -44.107318 kcal Electronic energy + Delta-G solvation = -21337.513601 eV Core-core repulsion = 18281.127196 eV Total energy + Delta-G solvation = -3056.386405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12382 -39.58346 -38.16480 -35.39708 -33.65297 -33.18903 -31.53154 -30.34989 -28.80080 -27.36476 -27.32339 -24.25549 -23.41957 -22.57108 -21.79709 -20.94620 -18.65981 -18.30495 -17.63304 -17.23371 -16.49085 -16.42041 -16.03433 -15.37768 -15.07152 -14.84526 -14.66890 -14.43232 -14.17461 -14.03829 -13.89039 -13.59591 -13.34387 -13.07099 -12.80550 -12.76181 -12.71823 -12.56739 -12.41048 -12.07313 -11.92451 -11.81575 -11.43901 -11.35339 -10.87828 -10.67154 -10.55081 -10.18127 -9.66460 -8.16888 -7.89724 -6.10993 0.44345 0.78084 1.38388 1.41452 1.49036 2.40714 2.53741 2.66136 2.93727 3.12759 3.92216 3.99590 4.07736 4.24345 4.28780 4.40860 4.45953 4.47058 4.54289 4.61730 4.70676 4.73630 4.77673 4.86779 4.94559 4.99684 5.04358 5.09584 5.13220 5.22696 5.27295 5.30898 5.36927 5.54595 5.56503 5.59091 5.63631 5.75548 5.82057 5.84988 6.34849 6.46729 6.66573 6.94873 7.02249 7.47252 8.93928 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.004190 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.862749 B = 6680.766897 C = 7244.289942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.338 6.338 3 C 0.052 3.948 4 C -0.164 4.164 5 C -0.174 4.174 6 C 0.180 3.820 7 N -0.739 5.739 8 C 0.176 3.824 9 H 0.063 0.937 10 C -0.101 4.101 11 C 0.009 3.991 12 C -0.496 4.496 13 C 0.022 3.978 14 N -0.932 5.932 15 Si 0.938 3.062 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.251 1.251 19 C -0.022 4.022 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.102 4.102 23 C -0.112 4.112 24 H 0.118 0.882 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.139 0.861 28 H 0.119 0.881 29 H 0.400 0.600 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.001 0.999 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.033 0.967 36 H 0.022 0.978 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -19.775 0.407 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.253 6.253 3 C 0.006 3.994 4 C -0.184 4.184 5 C -0.197 4.197 6 C 0.077 3.923 7 N -0.370 5.370 8 C 0.071 3.929 9 H 0.081 0.919 10 C -0.140 4.140 11 C -0.029 4.029 12 C -0.515 4.515 13 C -0.176 4.176 14 N -0.572 5.572 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.220 1.220 18 H -0.176 1.176 19 C -0.060 4.060 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.159 4.159 23 C -0.131 4.131 24 H 0.136 0.864 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.157 0.843 28 H 0.137 0.863 29 H 0.236 0.764 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.019 0.981 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.268 -19.630 0.405 19.675 hybrid contribution -0.274 1.149 -0.717 1.382 sum -1.542 -18.481 -0.312 18.548 Atomic orbital electron populations 1.23212 0.77362 1.05061 1.01631 1.85995 1.22621 1.26704 1.90001 1.18860 0.92525 0.84285 1.03686 1.21121 1.00399 0.91399 1.05444 1.20631 0.93020 0.97968 1.08056 1.17831 0.91874 0.85870 0.96737 1.44962 1.08220 1.01765 1.82031 1.20566 0.93823 0.82942 0.95617 0.91891 1.21670 0.98344 0.95416 0.98554 1.19299 0.94696 0.93704 0.95211 1.20705 1.34435 0.94687 1.01684 1.25569 0.95444 0.95812 1.00767 1.69970 1.44216 1.03413 1.39628 0.85843 0.78408 0.77863 0.81406 1.20055 1.21981 1.17572 1.19886 0.95458 0.93886 0.96790 1.21866 0.99286 0.97095 0.96585 1.19398 0.96897 0.90491 1.07130 1.20634 0.89383 1.03111 1.02790 1.20213 0.91395 0.97683 1.03847 0.86422 0.92447 0.92533 0.84311 0.86276 0.76353 0.93579 0.92937 0.98061 0.95371 0.92857 0.94846 0.95909 0.93856 0.93276 0.90596 0.90004 0.91916 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -8.06 10.50 -93.51 -0.98 -9.04 16 3 C 0.05 1.38 6.69 22.49 0.15 1.53 16 4 C -0.16 -4.35 9.03 22.35 0.20 -4.15 16 5 C -0.17 -5.20 8.81 22.39 0.20 -5.01 16 6 C 0.18 5.34 6.62 38.15 0.25 5.59 16 7 N -0.74 -22.54 5.15 -318.93 -1.64 -24.18 16 8 C 0.18 6.33 2.05 44.96 0.09 6.42 16 9 H 0.06 2.35 6.49 -2.39 -0.02 2.33 16 10 C -0.10 -4.06 5.40 30.66 0.17 -3.90 16 11 C 0.01 0.44 5.95 30.11 0.18 0.62 16 12 C -0.50 -25.61 5.53 -16.05 -0.09 -25.70 16 13 C 0.02 1.20 5.46 84.66 0.46 1.67 16 14 N -0.93 -54.37 12.73 21.45 0.27 -54.10 16 15 Si 0.94 42.86 27.55 68.60 1.89 44.75 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.25 -10.82 6.11 99.48 0.61 -10.21 16 19 C -0.02 -0.99 5.61 30.23 0.17 -0.82 16 20 C -0.11 -4.24 5.43 30.66 0.17 -4.07 16 21 C -0.13 -3.46 5.90 -19.74 -0.12 -3.58 16 22 C -0.10 -2.02 9.57 71.24 0.68 -1.34 16 23 C -0.11 -2.83 9.63 22.35 0.22 -2.62 16 24 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 0.83 7.66 -2.39 -0.02 0.82 16 26 H 0.06 0.83 7.66 -2.38 -0.02 0.81 16 27 H 0.14 3.04 6.29 -2.91 -0.02 3.02 16 28 H 0.12 3.71 6.15 -2.91 -0.02 3.69 16 29 H 0.40 11.01 6.59 -92.71 -0.61 10.39 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.03 1.54 7.07 -2.39 -0.02 1.52 16 34 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 35 H 0.03 1.48 4.64 -2.39 -0.01 1.47 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.77 7.72 -2.39 -0.02 1.75 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 41 H 0.06 1.24 6.55 -2.39 -0.02 1.22 16 42 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -60.55 326.00 3.69 -56.86 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.31 Total: 19.61 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.84 Total: -33.90 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.37 Total: -78.28 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.98 Total: -9.04 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.89 Total: 44.75 kcal Total: -60.55 3.69 -56.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.749 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds