Wall clock time and date at job start Mon Mar 30 2020 01:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36016 * 116.99692 * 2 1 4 4 C 1.38509 * 120.07929 * 270.27394 * 3 2 1 5 5 C 1.50694 * 119.99033 * 0.02562 * 4 3 2 6 6 C 1.38282 * 120.01664 * 180.27588 * 4 3 2 7 7 C 1.38254 * 120.17934 * 359.72732 * 6 4 3 8 8 C 1.38217 * 120.16498 * 359.97438 * 7 6 4 9 9 C 1.38726 * 119.97686 * 359.97438 * 8 7 6 10 10 N 1.39964 * 120.09124 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99882 * 0.02562 * 10 9 8 12 12 H 1.09002 * 109.41093 * 324.85324 * 11 10 9 13 13 C 1.52953 * 109.41556 * 84.64569 * 11 10 9 14 14 C 1.53237 * 109.40367 * 183.70828 * 13 11 10 15 15 C 1.51272 * 108.53336 * 305.37001 * 14 13 11 16 16 C 1.37878 * 120.84910 * 231.34819 * 15 14 13 17 17 N 1.31513 * 119.99877 * 348.88882 * 16 15 14 18 18 Si 1.86799 * 120.00046 * 168.88625 * 16 15 14 19 19 H 1.48499 * 109.46969 * 354.66013 * 18 16 15 20 20 H 1.48496 * 109.47159 * 114.65971 * 18 16 15 21 21 H 1.48501 * 109.47276 * 234.66018 * 18 16 15 22 22 C 1.51291 * 118.30565 * 51.34867 * 15 14 13 23 23 C 1.52959 * 109.41128 * 205.00182 * 11 10 9 24 24 H 1.09007 * 109.47129 * 299.99722 * 1 2 3 25 25 H 1.08992 * 109.47485 * 59.99889 * 1 2 3 26 26 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47091 * 270.27497 * 5 4 3 28 28 H 1.08998 * 109.47497 * 30.27354 * 5 4 3 29 29 H 1.09007 * 109.47354 * 150.27282 * 5 4 3 30 30 H 1.08000 * 119.91109 * 179.74537 * 6 4 3 31 31 H 1.08004 * 119.91930 * 179.97438 * 7 6 4 32 32 H 1.07997 * 120.01215 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00420 * 179.97438 * 10 9 8 34 34 H 1.09001 * 109.48422 * 303.68167 * 13 11 10 35 35 H 1.09003 * 109.48402 * 63.72420 * 13 11 10 36 36 H 1.08997 * 109.62702 * 65.08515 * 14 13 11 37 37 H 1.08999 * 109.62315 * 185.65676 * 14 13 11 38 38 H 0.96999 * 119.99957 * 180.02562 * 17 16 15 39 39 H 1.09000 * 109.64244 * 188.94161 * 22 15 14 40 40 H 1.09003 * 109.62637 * 68.36426 * 22 15 14 41 41 H 1.08999 * 109.48243 * 296.26603 * 23 11 10 42 42 H 1.08995 * 109.48739 * 56.29924 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 2.3564 1.8331 -1.1985 5 6 2.0090 1.1663 -2.5045 6 6 2.9893 3.0626 -1.1971 7 6 3.3093 3.6781 -0.0012 8 6 2.9979 3.0678 1.1992 9 6 2.3621 1.8349 1.2055 10 7 2.0451 1.2149 2.4197 11 6 2.3843 1.8684 3.6863 12 1 3.3265 2.4054 3.5759 13 6 1.2785 2.8565 4.0607 14 6 1.6765 3.6067 5.3362 15 6 1.9957 2.5916 6.4113 16 6 1.4112 2.6740 7.6574 17 7 0.7408 3.7526 7.9992 18 14 1.5715 1.2537 8.8600 19 1 2.2562 0.1164 8.1944 20 1 2.3653 1.6889 10.0371 21 1 0.2205 0.8265 9.3046 22 6 2.9725 1.4835 6.0845 23 6 2.5273 0.8106 4.7818 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 2.8388 0.5348 -2.8221 28 1 1.1163 0.5546 -2.3740 29 1 1.8206 1.9270 -3.2622 30 1 3.2339 3.5435 -2.1326 31 1 3.8040 4.6382 -0.0049 32 1 3.2494 3.5506 2.1319 33 1 1.6002 0.3530 2.4226 34 1 1.1378 3.5697 3.2485 35 1 0.3490 2.3138 4.2332 36 1 2.5553 4.2212 5.1404 37 1 0.8501 4.2381 5.6625 38 1 0.3300 3.8107 8.8760 39 1 2.9788 0.7508 6.8914 40 1 3.9712 1.9014 5.9580 41 1 1.5684 0.3163 4.9372 42 1 3.2717 0.0735 4.4805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:40 Heat of formation + Delta-G solvation = -28.949062 kcal Electronic energy + Delta-G solvation = -21667.824348 eV Core-core repulsion = 18612.095254 eV Total energy + Delta-G solvation = -3055.729094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07951 -37.67645 -36.82036 -34.44663 -32.20256 -31.38564 -29.71657 -29.14164 -27.32151 -26.63503 -25.89126 -22.38321 -22.02130 -21.41032 -20.42201 -19.36774 -17.56603 -16.83492 -16.04634 -15.93206 -15.46554 -14.62615 -14.49283 -14.34522 -13.69330 -13.53837 -13.36528 -13.17455 -12.87009 -12.51632 -12.34137 -12.18326 -12.09739 -11.88809 -11.55325 -11.42512 -11.08039 -10.99931 -10.87925 -10.75529 -10.22927 -10.00645 -9.83366 -9.64717 -9.40195 -8.98658 -8.65175 -8.43843 -8.36662 -6.97832 -6.15124 -4.04394 1.45364 1.81037 3.22886 3.32390 3.33492 3.66110 3.86508 4.21189 4.34663 4.96225 5.08073 5.11569 5.27867 5.35529 5.43774 5.50246 5.58116 5.60947 5.64541 5.69752 5.78195 5.85994 5.95039 6.10168 6.18342 6.43729 6.46112 6.56612 6.64269 6.71607 6.74392 6.81001 6.90769 6.99121 7.01752 7.09353 7.35689 7.53530 7.59498 7.70393 7.78750 7.88772 8.16404 8.34936 8.92502 9.50544 10.94304 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.004425 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.206692 B = 6325.668693 C = 6750.337089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.328 6.328 3 C -0.003 4.003 4 C -0.058 4.058 5 C -0.107 4.107 6 C -0.184 4.184 7 C -0.069 4.069 8 C -0.196 4.196 9 C 0.222 3.778 10 N -0.733 5.733 11 C 0.159 3.841 12 H 0.069 0.931 13 C -0.119 4.119 14 C 0.014 3.986 15 C -0.490 4.490 16 C 0.077 3.923 17 N -0.885 5.885 18 Si 0.878 3.122 19 H -0.256 1.256 20 H -0.283 1.283 21 H -0.286 1.286 22 C -0.021 4.021 23 C -0.113 4.113 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.396 0.604 34 H 0.033 0.967 35 H 0.049 0.951 36 H 0.005 0.995 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.043 0.957 40 H 0.019 0.981 41 H 0.053 0.947 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -4.402 -16.180 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.244 6.244 3 C -0.051 4.051 4 C -0.059 4.059 5 C -0.164 4.164 6 C -0.204 4.204 7 C -0.088 4.088 8 C -0.219 4.219 9 C 0.115 3.885 10 N -0.358 5.358 11 C 0.055 3.945 12 H 0.087 0.913 13 C -0.159 4.159 14 C -0.024 4.024 15 C -0.509 4.509 16 C -0.126 4.126 17 N -0.522 5.522 18 Si 0.706 3.294 19 H -0.181 1.181 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.059 4.059 23 C -0.151 4.151 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.230 0.770 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.297 -4.397 -15.818 16.469 hybrid contribution -0.461 -0.809 0.773 1.210 sum 0.837 -5.207 -15.046 15.943 Atomic orbital electron populations 1.23000 0.80758 1.02465 1.00538 1.86116 1.18873 1.25202 1.94250 1.17917 1.06871 0.89555 0.90753 1.19847 0.97893 0.94138 0.94066 1.20666 1.01860 1.00100 0.93768 1.20567 1.05953 0.96068 0.97849 1.20891 0.97237 0.98832 0.91851 1.20715 1.06215 0.95861 0.99075 1.18237 0.92833 0.91560 0.85881 1.45278 1.64670 1.23121 1.02759 1.21029 0.98148 0.94239 0.81062 0.91272 1.22089 0.97583 0.97319 0.98871 1.19333 0.97351 0.95080 0.90670 1.20025 1.24466 1.09512 0.96878 1.24848 0.94898 0.95549 0.97285 1.69900 1.35074 1.26373 1.20891 0.86765 0.77752 0.83950 0.80951 1.18104 1.20888 1.21239 1.19921 0.96755 0.96156 0.93093 1.21839 1.00097 0.96380 0.96803 0.93728 0.93939 0.89395 0.91199 0.91789 0.91883 0.86566 0.86221 0.85252 0.76986 0.94820 0.93264 0.97701 0.92726 0.92640 0.93832 0.96286 0.92807 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.76 101.05 1.09 1.40 16 2 O -0.33 -4.74 8.89 -19.79 -0.18 -4.92 16 3 C 0.00 -0.04 5.71 -39.08 -0.22 -0.27 16 4 C -0.06 -0.79 5.89 -104.51 -0.62 -1.41 16 5 C -0.11 -1.14 9.78 36.00 0.35 -0.79 16 6 C -0.18 -2.37 9.69 -39.56 -0.38 -2.75 16 7 C -0.07 -0.94 10.04 -39.58 -0.40 -1.34 16 8 C -0.20 -3.10 8.81 -39.41 -0.35 -3.45 16 9 C 0.22 3.66 6.65 -83.56 -0.56 3.10 16 10 N -0.73 -12.39 5.24 -52.07 -0.27 -12.67 16 11 C 0.16 3.00 2.05 -67.97 -0.14 2.86 16 12 H 0.07 1.34 6.49 -51.93 -0.34 1.00 16 13 C -0.12 -2.50 5.43 -26.63 -0.14 -2.64 16 14 C 0.01 0.33 5.93 -27.48 -0.16 0.17 16 15 C -0.49 -12.58 5.48 -98.91 -0.54 -13.12 16 16 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 17 N -0.89 -25.19 12.82 55.43 0.71 -24.48 16 18 Si 0.88 20.40 27.95 -169.99 -4.75 15.65 16 19 H -0.26 -5.66 5.58 56.52 0.32 -5.34 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.02 -0.48 5.66 -27.47 -0.16 -0.64 16 23 C -0.11 -2.22 5.40 -26.63 -0.14 -2.37 16 24 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.04 0.44 7.22 -51.93 -0.38 0.07 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.67 6.29 -51.93 -0.33 0.34 16 29 H 0.06 0.56 8.09 -51.92 -0.42 0.14 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.13 2.12 6.16 -52.49 -0.32 1.80 16 33 H 0.40 6.39 7.96 -40.82 -0.33 6.07 16 34 H 0.03 0.67 7.73 -51.93 -0.40 0.27 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.05 1.47 7.19 -51.93 -0.37 1.10 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.04 0.98 4.36 -51.93 -0.23 0.76 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -27.95 328.49 -8.56 -36.51 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.56 Total: 4.21 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.47 Total: -19.26 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.44 Total: -37.14 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.18 Total: -4.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.75 Total: 15.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.95 -8.56 -36.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.562 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds