Wall clock time and date at job start Mon Mar 30 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36016 * 116.99692 * 2 1 4 4 C 1.38509 * 120.07929 * 270.27394 * 3 2 1 5 5 C 1.50694 * 119.99033 * 0.02562 * 4 3 2 6 6 C 1.38282 * 120.01664 * 180.27588 * 4 3 2 7 7 C 1.38254 * 120.17934 * 359.72732 * 6 4 3 8 8 C 1.38217 * 120.16498 * 359.97438 * 7 6 4 9 9 C 1.38726 * 119.97686 * 359.97438 * 8 7 6 10 10 N 1.39964 * 120.09124 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99882 * 0.02562 * 10 9 8 12 12 H 1.09002 * 109.41093 * 324.85324 * 11 10 9 13 13 C 1.52953 * 109.41556 * 84.64569 * 11 10 9 14 14 C 1.53237 * 109.40367 * 183.70828 * 13 11 10 15 15 C 1.51272 * 108.53336 * 305.37001 * 14 13 11 16 16 C 1.37878 * 120.84910 * 231.34819 * 15 14 13 17 17 N 1.31513 * 119.99877 * 348.88882 * 16 15 14 18 18 Si 1.86799 * 120.00046 * 168.88625 * 16 15 14 19 19 H 1.48499 * 109.46969 * 354.66013 * 18 16 15 20 20 H 1.48496 * 109.47159 * 114.65971 * 18 16 15 21 21 H 1.48501 * 109.47276 * 234.66018 * 18 16 15 22 22 C 1.51291 * 118.30565 * 51.34867 * 15 14 13 23 23 C 1.52959 * 109.41128 * 205.00182 * 11 10 9 24 24 H 1.09007 * 109.47129 * 299.99722 * 1 2 3 25 25 H 1.08992 * 109.47485 * 59.99889 * 1 2 3 26 26 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47091 * 270.27497 * 5 4 3 28 28 H 1.08998 * 109.47497 * 30.27354 * 5 4 3 29 29 H 1.09007 * 109.47354 * 150.27282 * 5 4 3 30 30 H 1.08000 * 119.91109 * 179.74537 * 6 4 3 31 31 H 1.08004 * 119.91930 * 179.97438 * 7 6 4 32 32 H 1.07997 * 120.01215 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00420 * 179.97438 * 10 9 8 34 34 H 1.09001 * 109.48422 * 303.68167 * 13 11 10 35 35 H 1.09003 * 109.48402 * 63.72420 * 13 11 10 36 36 H 1.08997 * 109.62702 * 65.08515 * 14 13 11 37 37 H 1.08999 * 109.62315 * 185.65676 * 14 13 11 38 38 H 0.96999 * 119.99957 * 180.02562 * 17 16 15 39 39 H 1.09000 * 109.64244 * 188.94161 * 22 15 14 40 40 H 1.09003 * 109.62637 * 68.36426 * 22 15 14 41 41 H 1.08999 * 109.48243 * 296.26603 * 23 11 10 42 42 H 1.08995 * 109.48739 * 56.29924 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 2.3564 1.8331 -1.1985 5 6 2.0090 1.1663 -2.5045 6 6 2.9893 3.0626 -1.1971 7 6 3.3093 3.6781 -0.0012 8 6 2.9979 3.0678 1.1992 9 6 2.3621 1.8349 1.2055 10 7 2.0451 1.2149 2.4197 11 6 2.3843 1.8684 3.6863 12 1 3.3265 2.4054 3.5759 13 6 1.2785 2.8565 4.0607 14 6 1.6765 3.6067 5.3362 15 6 1.9957 2.5916 6.4113 16 6 1.4112 2.6740 7.6574 17 7 0.7408 3.7526 7.9992 18 14 1.5715 1.2537 8.8600 19 1 2.2562 0.1164 8.1944 20 1 2.3653 1.6889 10.0371 21 1 0.2205 0.8265 9.3046 22 6 2.9725 1.4835 6.0845 23 6 2.5273 0.8106 4.7818 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 2.8388 0.5348 -2.8221 28 1 1.1163 0.5546 -2.3740 29 1 1.8206 1.9270 -3.2622 30 1 3.2339 3.5435 -2.1326 31 1 3.8040 4.6382 -0.0049 32 1 3.2494 3.5506 2.1319 33 1 1.6002 0.3530 2.4226 34 1 1.1378 3.5697 3.2485 35 1 0.3490 2.3138 4.2332 36 1 2.5553 4.2212 5.1404 37 1 0.8501 4.2381 5.6625 38 1 0.3300 3.8107 8.8760 39 1 2.9788 0.7508 6.8914 40 1 3.9712 1.9014 5.9580 41 1 1.5684 0.3163 4.9372 42 1 3.2717 0.0735 4.4805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:39 Heat of formation + Delta-G solvation = -43.850061 kcal Electronic energy + Delta-G solvation = -21668.470504 eV Core-core repulsion = 18612.095254 eV Total energy + Delta-G solvation = -3056.375250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20126 -39.16840 -37.95968 -35.96268 -33.84557 -32.59906 -31.50513 -30.50466 -28.51643 -27.91669 -26.95742 -24.05367 -23.46613 -22.84545 -21.84069 -20.89759 -18.78670 -18.11955 -17.69101 -17.14651 -16.48050 -16.40602 -15.94989 -15.45174 -15.10336 -14.83988 -14.69619 -14.41058 -14.26992 -14.10898 -13.93189 -13.42318 -13.26532 -13.11039 -12.93396 -12.80816 -12.62019 -12.55889 -12.42213 -11.99314 -11.89395 -11.71706 -11.25993 -11.12988 -10.87280 -10.73235 -10.53287 -10.37258 -9.43670 -8.23721 -8.17112 -6.11513 0.37375 0.69862 1.38143 1.42753 1.50813 2.40927 2.47782 2.68364 3.10155 3.14154 3.90385 4.03352 4.15222 4.22182 4.37403 4.43875 4.46986 4.48600 4.56304 4.61713 4.69389 4.74387 4.79640 4.87842 4.92411 4.95253 4.99899 5.02592 5.18688 5.20770 5.27608 5.30862 5.38639 5.55615 5.59853 5.61986 5.73631 5.76430 5.81087 5.94580 6.29999 6.33526 6.68816 6.92861 6.94128 7.46015 8.92552 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.004425 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.206692 B = 6325.668693 C = 6750.337089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C -0.011 4.011 4 C -0.065 4.065 5 C -0.105 4.105 6 C -0.177 4.177 7 C -0.072 4.072 8 C -0.215 4.215 9 C 0.198 3.802 10 N -0.734 5.734 11 C 0.175 3.825 12 H 0.065 0.935 13 C -0.104 4.104 14 C 0.012 3.988 15 C -0.499 4.499 16 C 0.021 3.979 17 N -0.931 5.931 18 Si 0.934 3.066 19 H -0.233 1.233 20 H -0.284 1.284 21 H -0.290 1.290 22 C -0.023 4.023 23 C -0.107 4.107 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.399 0.601 34 H 0.038 0.962 35 H 0.036 0.964 36 H -0.001 1.001 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.047 0.953 40 H 0.022 0.978 41 H 0.052 0.948 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 -5.973 -18.545 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.256 6.256 3 C -0.059 4.059 4 C -0.067 4.067 5 C -0.162 4.162 6 C -0.197 4.197 7 C -0.091 4.091 8 C -0.238 4.238 9 C 0.092 3.908 10 N -0.361 5.361 11 C 0.070 3.930 12 H 0.083 0.917 13 C -0.143 4.143 14 C -0.026 4.026 15 C -0.519 4.519 16 C -0.178 4.178 17 N -0.570 5.570 18 Si 0.760 3.240 19 H -0.157 1.157 20 H -0.210 1.210 21 H -0.216 1.216 22 C -0.061 4.061 23 C -0.145 4.145 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.133 0.867 33 H 0.234 0.766 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.065 -5.983 -18.229 19.296 hybrid contribution -0.686 -0.233 1.357 1.538 sum 1.379 -6.216 -16.872 18.033 Atomic orbital electron populations 1.23148 0.79270 1.04035 1.00443 1.86078 1.20284 1.24947 1.94289 1.18129 1.07022 0.89794 0.90929 1.20260 0.97240 0.94410 0.94742 1.20722 1.02136 1.00673 0.92641 1.20963 1.04341 0.95661 0.98735 1.21192 0.96849 0.99660 0.91377 1.20781 1.07317 0.96136 0.99552 1.18455 0.94120 0.92191 0.86020 1.44945 1.65697 1.23269 1.02186 1.20633 0.96790 0.93521 0.82061 0.91740 1.21861 0.97843 0.97537 0.97081 1.19276 0.95758 0.95044 0.92524 1.20623 1.24289 1.10152 0.96788 1.25661 0.95127 0.97686 0.99287 1.70042 1.37074 1.28508 1.21422 0.85861 0.77554 0.81755 0.78787 1.15714 1.21011 1.21630 1.19920 0.95990 0.95381 0.94766 1.21717 1.00612 0.96678 0.95482 0.95000 0.92828 0.87056 0.90418 0.91701 0.89760 0.83544 0.83990 0.86662 0.76597 0.94304 0.94482 0.98309 0.96195 0.92880 0.93468 0.95936 0.92955 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.76 113.37 1.22 1.76 16 2 O -0.34 -9.20 8.89 -93.73 -0.83 -10.03 16 3 C -0.01 -0.31 5.71 22.59 0.13 -0.19 16 4 C -0.07 -1.60 5.89 -19.79 -0.12 -1.72 16 5 C -0.11 -1.87 9.78 71.23 0.70 -1.18 16 6 C -0.18 -4.00 9.69 22.28 0.22 -3.79 16 7 C -0.07 -1.82 10.04 22.27 0.22 -1.59 16 8 C -0.21 -6.66 8.81 22.38 0.20 -6.46 16 9 C 0.20 6.33 6.65 38.22 0.25 6.59 16 10 N -0.73 -24.27 5.24 -318.65 -1.67 -25.95 16 11 C 0.17 6.53 2.05 44.96 0.09 6.62 16 12 H 0.06 2.49 6.49 -2.39 -0.02 2.47 16 13 C -0.10 -4.43 5.43 30.66 0.17 -4.26 16 14 C 0.01 0.61 5.93 30.11 0.18 0.79 16 15 C -0.50 -25.97 5.48 -16.16 -0.09 -26.06 16 16 C 0.02 1.13 5.44 84.66 0.46 1.59 16 17 N -0.93 -54.92 12.82 21.45 0.28 -54.64 16 18 Si 0.93 42.05 27.95 68.60 1.92 43.97 16 19 H -0.23 -9.54 5.58 99.48 0.56 -8.99 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 C -0.02 -1.00 5.66 30.11 0.17 -0.83 16 23 C -0.11 -4.04 5.40 30.66 0.17 -3.88 16 24 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.05 1.00 7.22 -2.39 -0.02 0.98 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.15 6.29 -2.39 -0.02 1.13 16 29 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.12 3.82 6.16 -2.91 -0.02 3.80 16 33 H 0.40 12.50 7.96 -92.71 -0.74 11.77 16 34 H 0.04 1.58 7.73 -2.39 -0.02 1.56 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 37 H 0.02 1.11 7.19 -2.39 -0.02 1.10 16 38 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.05 2.03 4.36 -2.39 -0.01 2.02 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -61.17 328.49 3.78 -57.39 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.13 Total: 21.88 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.97 Total: -32.61 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.40 Total: -80.59 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.83 Total: -10.03 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.92 Total: 43.97 kcal Total: -61.17 3.78 -57.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.536 kcal (2) G-P(sol) polarization free energy of solvation -61.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds