Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36016 * 116.99318 * 2 1 4 4 C 1.38500 * 120.08593 * 0.02715 * 3 2 1 5 5 C 1.38275 * 120.02108 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.18272 * 359.97438 * 5 4 3 7 7 C 1.38229 * 120.15607 * 359.67982 * 6 5 4 8 8 C 1.50697 * 120.00869 * 180.30173 * 7 6 5 9 9 C 1.38722 * 119.98019 * 0.62025 * 7 6 5 10 10 N 1.39960 * 120.09275 * 179.67862 * 9 7 6 11 11 C 1.46897 * 111.00169 * 278.80323 * 10 9 7 12 12 H 1.09001 * 109.41260 * 33.30978 * 11 10 9 13 13 C 1.52958 * 109.41574 * 153.16880 * 11 10 9 14 14 C 1.53230 * 109.40441 * 183.63587 * 13 11 10 15 15 C 1.51276 * 108.53726 * 305.37184 * 14 13 11 16 16 C 1.37871 * 120.85123 * 231.32933 * 15 14 13 17 17 N 1.31509 * 120.00364 * 359.97438 * 16 15 14 18 18 Si 1.86802 * 119.99964 * 180.02562 * 16 15 14 19 19 H 1.48494 * 109.47589 * 89.99663 * 18 16 15 20 20 H 1.48503 * 109.46983 * 210.00075 * 18 16 15 21 21 H 1.48504 * 109.47046 * 329.99451 * 18 16 15 22 22 C 1.51270 * 118.29642 * 51.34843 * 15 14 13 23 23 C 1.52954 * 109.35510 * 273.49243 * 11 10 9 24 24 H 1.09000 * 109.46310 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47326 * 299.99448 * 1 2 3 26 26 H 1.09002 * 109.46953 * 60.00063 * 1 2 3 27 27 H 1.08001 * 119.98784 * 359.97240 * 4 3 2 28 28 H 1.08005 * 119.91405 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.92791 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47542 * 270.31833 * 8 7 6 31 31 H 1.09004 * 109.47453 * 30.32005 * 8 7 6 32 32 H 1.09001 * 109.47275 * 150.32089 * 8 7 6 33 33 H 1.00902 * 111.00052 * 42.75262 * 10 9 7 34 34 H 1.09000 * 109.48397 * 63.65858 * 13 11 10 35 35 H 1.08997 * 109.48215 * 303.61082 * 13 11 10 36 36 H 1.08998 * 109.62726 * 65.08341 * 14 13 11 37 37 H 1.09003 * 109.62570 * 185.66160 * 14 13 11 38 38 H 0.97000 * 120.00617 * 179.97438 * 17 16 15 39 39 H 1.08999 * 109.62565 * 188.93773 * 22 15 14 40 40 H 1.08999 * 109.78736 * 68.46305 * 22 15 14 41 41 H 1.09002 * 109.47997 * 296.30532 * 23 11 10 42 42 H 1.08996 * 109.48626 * 56.33265 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2937 2.3746 0.0006 5 6 1.9227 3.6060 0.0000 6 6 3.3032 3.6813 -0.0005 7 6 4.0617 2.5258 0.0061 8 6 5.5662 2.6118 0.0123 9 6 3.4376 1.2869 0.0004 10 7 4.2034 0.1154 0.0003 11 6 4.6725 -0.2069 -1.3540 12 1 4.8566 0.7166 -1.9029 13 6 5.9697 -1.0124 -1.2645 14 6 6.5070 -1.2705 -2.6761 15 6 5.4179 -1.9313 -3.4919 16 6 5.6647 -3.0940 -4.1906 17 7 6.8594 -3.6425 -4.1535 18 14 4.3025 -3.8895 -5.1911 19 1 4.3227 -3.3480 -6.5736 20 1 4.5120 -5.3592 -5.2320 21 1 2.9897 -3.5941 -4.5628 22 6 4.0513 -1.2835 -3.5219 23 6 3.6030 -1.0249 -2.0796 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2151 2.3193 0.0006 28 1 1.3340 4.5115 0.0001 29 1 3.7902 4.6453 -0.0014 30 1 5.9331 2.6353 -1.0138 31 1 5.8761 3.5197 0.5298 32 1 5.9777 1.7427 0.5255 33 1 4.9777 0.1894 0.6430 34 1 5.7733 -1.9641 -0.7707 35 1 6.7076 -0.4508 -0.6917 36 1 6.7886 -0.3248 -3.1392 37 1 7.3747 -1.9281 -2.6230 38 1 7.0330 -4.4607 -4.6448 39 1 3.3412 -1.9494 -4.0122 40 1 4.1023 -0.3395 -4.0643 41 1 3.4626 -1.9763 -1.5665 42 1 2.6635 -0.4723 -2.0843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -22.760624 kcal Electronic energy + Delta-G solvation = -22114.546371 eV Core-core repulsion = 19059.085628 eV Total energy + Delta-G solvation = -3055.460743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27821 -37.93250 -36.88729 -34.28071 -32.09261 -31.36093 -29.71775 -28.88130 -27.37768 -26.85419 -25.79571 -22.17701 -21.51932 -21.25526 -20.67987 -19.07059 -17.52347 -16.43594 -16.23065 -15.90423 -15.54931 -14.73927 -14.38654 -14.27411 -13.97530 -13.57411 -13.34592 -13.12214 -12.58571 -12.36581 -12.24198 -12.12763 -11.89069 -11.81492 -11.59869 -11.40160 -10.89757 -10.87344 -10.72879 -10.71338 -10.40835 -10.00407 -9.90928 -9.39008 -8.93520 -8.59422 -8.51761 -8.38497 -8.12744 -7.68245 -6.03258 -3.92824 1.38298 1.59516 3.32201 3.40161 3.42374 3.48750 3.81262 4.44883 4.50314 4.89100 4.93570 5.13109 5.22238 5.23986 5.30006 5.32470 5.46674 5.55938 5.65319 5.71970 5.80183 5.88808 6.01510 6.12216 6.32045 6.38755 6.47308 6.62906 6.66890 6.75989 6.86017 6.94356 7.01388 7.08236 7.12390 7.23967 7.48436 7.58120 7.71830 7.80346 7.82191 7.87944 8.05852 8.46808 9.04142 9.62223 11.06549 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.005749 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.356571 B = 4868.982134 C = 5713.267678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.288 6.288 3 C 0.147 3.853 4 C -0.214 4.214 5 C -0.092 4.092 6 C -0.151 4.151 7 C -0.087 4.087 8 C -0.116 4.116 9 C 0.079 3.921 10 N -0.641 5.641 11 C 0.110 3.890 12 H 0.035 0.965 13 C -0.109 4.109 14 C 0.013 3.987 15 C -0.482 4.482 16 C 0.075 3.925 17 N -0.893 5.893 18 Si 0.886 3.114 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.264 1.264 22 C -0.023 4.023 23 C -0.086 4.086 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.342 0.658 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.001 0.999 37 H 0.058 0.942 38 H 0.263 0.737 39 H 0.033 0.967 40 H 0.011 0.989 41 H 0.055 0.945 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.250 12.108 9.289 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.199 6.199 3 C 0.100 3.900 4 C -0.234 4.234 5 C -0.111 4.111 6 C -0.170 4.170 7 C -0.090 4.090 8 C -0.173 4.173 9 C -0.018 4.018 10 N -0.271 5.271 11 C 0.004 3.996 12 H 0.053 0.947 13 C -0.148 4.148 14 C -0.025 4.025 15 C -0.501 4.501 16 C -0.127 4.127 17 N -0.531 5.531 18 Si 0.714 3.286 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.061 4.061 23 C -0.124 4.124 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.568 11.282 9.187 17.414 hybrid contribution -0.382 0.359 -0.642 0.829 sum -9.950 11.642 8.545 17.537 Atomic orbital electron populations 1.23035 0.79763 1.03699 1.00592 1.86341 1.19797 1.25919 1.87888 1.18892 0.91036 0.84320 0.95747 1.21106 0.99715 0.92314 1.10236 1.20793 0.94446 0.96696 0.99136 1.20765 0.93646 0.97473 1.05125 1.20347 0.96314 0.92821 0.99504 1.20791 0.90949 1.02584 1.02936 1.17974 0.90201 0.89352 1.04296 1.58102 1.26794 1.31487 1.10725 1.21525 0.95778 0.97090 0.85173 0.94702 1.21854 0.93554 0.98537 1.00813 1.19347 0.97415 0.96002 0.89750 1.20047 0.94398 1.07628 1.28007 1.24831 0.95479 0.96365 0.96061 1.69833 1.20857 1.20234 1.42209 0.86694 0.83148 0.78190 0.80545 1.20567 1.21700 1.18897 1.19858 0.96604 0.96851 0.92761 1.21462 0.95069 0.98563 0.97310 0.88456 0.93250 0.93109 0.85724 0.86258 0.86363 0.90562 0.91376 0.91479 0.83567 0.92290 0.95502 0.98064 0.92358 0.92720 0.94877 0.97070 0.92613 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.29 -4.67 9.26 -19.79 -0.18 -4.85 16 3 C 0.15 2.35 6.25 -39.08 -0.24 2.11 16 4 C -0.21 -2.83 9.04 -39.47 -0.36 -3.19 16 5 C -0.09 -1.12 10.04 -39.56 -0.40 -1.51 16 6 C -0.15 -1.92 9.70 -39.58 -0.38 -2.30 16 7 C -0.09 -1.26 5.68 -104.45 -0.59 -1.86 16 8 C -0.12 -1.45 9.11 36.00 0.33 -1.13 16 9 C 0.08 1.31 5.02 -83.56 -0.42 0.89 16 10 N -0.64 -11.41 5.79 -51.82 -0.30 -11.72 16 11 C 0.11 2.24 2.04 -67.76 -0.14 2.10 16 12 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 13 C -0.11 -2.35 5.22 -26.63 -0.14 -2.49 16 14 C 0.01 0.32 5.97 -27.48 -0.16 0.16 16 15 C -0.48 -13.03 5.51 -98.92 -0.55 -13.57 16 16 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 17 N -0.89 -26.14 12.73 55.43 0.71 -25.43 16 18 Si 0.89 21.66 27.53 -169.99 -4.68 16.98 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.29 6.10 56.52 0.35 -5.94 16 22 C -0.02 -0.56 5.59 -27.48 -0.15 -0.71 16 23 C -0.09 -1.91 5.39 -26.63 -0.14 -2.05 16 24 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 28 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.07 0.84 6.38 -51.93 -0.33 0.51 16 33 H 0.34 5.53 6.51 -39.29 -0.26 5.27 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 36 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 37 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.03 0.81 4.59 -51.93 -0.24 0.57 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.03 0.69 6.60 -51.93 -0.34 0.34 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -30.26 324.78 -8.46 -38.72 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.44 Total: 1.70 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.46 Total: -20.30 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.41 Total: -37.15 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.18 Total: -4.85 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.68 Total: 16.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.26 -8.46 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.963 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds