Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36016 * 116.99318 * 2 1 4 4 C 1.38500 * 120.08593 * 0.02715 * 3 2 1 5 5 C 1.38275 * 120.02108 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.18272 * 359.97438 * 5 4 3 7 7 C 1.38229 * 120.15607 * 359.67982 * 6 5 4 8 8 C 1.50697 * 120.00869 * 180.30173 * 7 6 5 9 9 C 1.38722 * 119.98019 * 0.62025 * 7 6 5 10 10 N 1.39960 * 120.09275 * 179.67862 * 9 7 6 11 11 C 1.46897 * 111.00169 * 278.80323 * 10 9 7 12 12 H 1.09001 * 109.41260 * 33.30978 * 11 10 9 13 13 C 1.52958 * 109.41574 * 153.16880 * 11 10 9 14 14 C 1.53230 * 109.40441 * 183.63587 * 13 11 10 15 15 C 1.51276 * 108.53726 * 305.37184 * 14 13 11 16 16 C 1.37871 * 120.85123 * 231.32933 * 15 14 13 17 17 N 1.31509 * 120.00364 * 359.97438 * 16 15 14 18 18 Si 1.86802 * 119.99964 * 180.02562 * 16 15 14 19 19 H 1.48494 * 109.47589 * 89.99663 * 18 16 15 20 20 H 1.48503 * 109.46983 * 210.00075 * 18 16 15 21 21 H 1.48504 * 109.47046 * 329.99451 * 18 16 15 22 22 C 1.51270 * 118.29642 * 51.34843 * 15 14 13 23 23 C 1.52954 * 109.35510 * 273.49243 * 11 10 9 24 24 H 1.09000 * 109.46310 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47326 * 299.99448 * 1 2 3 26 26 H 1.09002 * 109.46953 * 60.00063 * 1 2 3 27 27 H 1.08001 * 119.98784 * 359.97240 * 4 3 2 28 28 H 1.08005 * 119.91405 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.92791 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47542 * 270.31833 * 8 7 6 31 31 H 1.09004 * 109.47453 * 30.32005 * 8 7 6 32 32 H 1.09001 * 109.47275 * 150.32089 * 8 7 6 33 33 H 1.00902 * 111.00052 * 42.75262 * 10 9 7 34 34 H 1.09000 * 109.48397 * 63.65858 * 13 11 10 35 35 H 1.08997 * 109.48215 * 303.61082 * 13 11 10 36 36 H 1.08998 * 109.62726 * 65.08341 * 14 13 11 37 37 H 1.09003 * 109.62570 * 185.66160 * 14 13 11 38 38 H 0.97000 * 120.00617 * 179.97438 * 17 16 15 39 39 H 1.08999 * 109.62565 * 188.93773 * 22 15 14 40 40 H 1.08999 * 109.78736 * 68.46305 * 22 15 14 41 41 H 1.09002 * 109.47997 * 296.30532 * 23 11 10 42 42 H 1.08996 * 109.48626 * 56.33265 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2937 2.3746 0.0006 5 6 1.9227 3.6060 0.0000 6 6 3.3032 3.6813 -0.0005 7 6 4.0617 2.5258 0.0061 8 6 5.5662 2.6118 0.0123 9 6 3.4376 1.2869 0.0004 10 7 4.2034 0.1154 0.0003 11 6 4.6725 -0.2069 -1.3540 12 1 4.8566 0.7166 -1.9029 13 6 5.9697 -1.0124 -1.2645 14 6 6.5070 -1.2705 -2.6761 15 6 5.4179 -1.9313 -3.4919 16 6 5.6647 -3.0940 -4.1906 17 7 6.8594 -3.6425 -4.1535 18 14 4.3025 -3.8895 -5.1911 19 1 4.3227 -3.3480 -6.5736 20 1 4.5120 -5.3592 -5.2320 21 1 2.9897 -3.5941 -4.5628 22 6 4.0513 -1.2835 -3.5219 23 6 3.6030 -1.0249 -2.0796 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2151 2.3193 0.0006 28 1 1.3340 4.5115 0.0001 29 1 3.7902 4.6453 -0.0014 30 1 5.9331 2.6353 -1.0138 31 1 5.8761 3.5197 0.5298 32 1 5.9777 1.7427 0.5255 33 1 4.9777 0.1894 0.6430 34 1 5.7733 -1.9641 -0.7707 35 1 6.7076 -0.4508 -0.6917 36 1 6.7886 -0.3248 -3.1392 37 1 7.3747 -1.9281 -2.6230 38 1 7.0330 -4.4607 -4.6448 39 1 3.3412 -1.9494 -4.0122 40 1 4.1023 -0.3395 -4.0643 41 1 3.4626 -1.9763 -1.5665 42 1 2.6635 -0.4723 -2.0843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -40.291359 kcal Electronic energy + Delta-G solvation = -22115.306561 eV Core-core repulsion = 19059.085628 eV Total energy + Delta-G solvation = -3056.220933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37964 -39.25527 -38.27353 -35.83856 -33.73237 -32.65560 -31.55166 -30.27865 -28.36582 -28.28652 -27.01427 -23.83610 -23.30170 -22.53885 -21.86961 -20.87582 -18.56332 -18.10090 -17.51230 -17.15085 -16.70195 -16.41110 -16.07221 -15.31973 -15.28395 -14.81149 -14.57430 -14.49273 -14.36548 -14.24609 -13.81556 -13.34548 -13.15687 -12.96539 -12.80513 -12.75355 -12.59624 -12.53687 -12.30909 -11.89089 -11.84972 -11.77288 -11.69036 -11.32891 -10.84961 -10.56495 -10.46186 -9.76857 -9.31292 -8.86065 -8.16207 -6.09550 0.34776 0.56310 1.37115 1.39896 1.48567 2.41174 2.52572 2.76849 3.06857 3.29791 3.92191 4.04013 4.13198 4.22528 4.25187 4.39781 4.41520 4.43291 4.48374 4.59257 4.71142 4.71960 4.76120 4.78032 4.86521 4.95874 5.06967 5.10693 5.15115 5.25742 5.28900 5.32918 5.39999 5.49945 5.62306 5.63034 5.64382 5.77563 5.89146 5.91856 6.24898 6.37706 6.45762 6.84687 6.95816 7.47885 8.94720 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.005749 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.356571 B = 4868.982134 C = 5713.267678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.321 6.321 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.085 4.085 6 C -0.155 4.155 7 C -0.094 4.094 8 C -0.115 4.115 9 C 0.040 3.960 10 N -0.640 5.640 11 C 0.127 3.873 12 H 0.028 0.972 13 C -0.098 4.098 14 C 0.010 3.990 15 C -0.495 4.495 16 C 0.021 3.979 17 N -0.931 5.931 18 Si 0.938 3.062 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.254 1.254 22 C -0.023 4.023 23 C -0.075 4.075 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.348 0.652 34 H 0.042 0.958 35 H 0.054 0.946 36 H -0.001 1.001 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.032 0.968 40 H 0.013 0.987 41 H 0.037 0.963 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 14.337 9.995 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.096 4.096 8 C -0.172 4.172 9 C -0.057 4.057 10 N -0.271 5.271 11 C 0.020 3.980 12 H 0.046 0.954 13 C -0.136 4.136 14 C -0.028 4.028 15 C -0.514 4.514 16 C -0.176 4.176 17 N -0.572 5.572 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.217 1.217 21 H -0.178 1.178 22 C -0.061 4.061 23 C -0.114 4.114 24 H 0.124 0.876 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.171 0.829 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.551 13.533 9.906 20.364 hybrid contribution 0.197 -0.218 -0.813 0.864 sum -11.353 13.315 9.093 19.720 Atomic orbital electron populations 1.23278 0.77652 1.04852 1.01941 1.86274 1.22204 1.26726 1.88156 1.19180 0.91172 0.85141 0.96461 1.21427 1.00913 0.91827 1.09398 1.21256 0.94603 0.97571 0.96887 1.21135 0.94138 0.97945 1.04181 1.20570 0.97245 0.92732 0.99099 1.20816 0.90062 1.03738 1.02576 1.18207 0.90654 0.89454 1.07349 1.57904 1.26939 1.33234 1.09026 1.21161 0.94138 0.95946 0.86783 0.95395 1.21642 0.95085 0.98472 0.98399 1.19300 0.96343 0.95003 0.92116 1.20625 0.95791 1.07663 1.27360 1.25584 0.97370 0.97314 0.97380 1.69961 1.22673 1.20854 1.43683 0.85848 0.81078 0.77246 0.79419 1.19890 1.21652 1.17827 1.19858 0.95276 0.96597 0.94328 1.21295 0.96131 0.98115 0.95825 0.87575 0.91314 0.92196 0.83387 0.82847 0.83752 0.91543 0.88808 0.91902 0.82866 0.93955 0.92774 0.98268 0.95327 0.92837 0.94924 0.96834 0.94394 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.32 -10.08 9.26 -93.73 -0.87 -10.94 16 3 C 0.13 3.86 6.25 22.59 0.14 4.00 16 4 C -0.22 -5.06 9.04 22.34 0.20 -4.86 16 5 C -0.09 -1.73 10.04 22.28 0.22 -1.50 16 6 C -0.16 -3.42 9.70 22.27 0.22 -3.20 16 7 C -0.09 -2.53 5.68 -19.75 -0.11 -2.64 16 8 C -0.12 -2.68 9.11 71.23 0.65 -2.03 16 9 C 0.04 1.28 5.02 38.22 0.19 1.48 16 10 N -0.64 -22.50 5.79 -317.86 -1.84 -24.34 16 11 C 0.13 5.11 2.04 44.89 0.09 5.20 16 12 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 13 C -0.10 -4.23 5.22 30.66 0.16 -4.07 16 14 C 0.01 0.54 5.97 30.11 0.18 0.72 16 15 C -0.50 -27.17 5.51 -16.17 -0.09 -27.26 16 16 C 0.02 1.22 5.46 84.65 0.46 1.68 16 17 N -0.93 -56.06 12.73 21.44 0.27 -55.79 16 18 Si 0.94 44.76 27.53 68.60 1.89 46.65 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.25 -11.57 6.10 99.48 0.61 -10.96 16 22 C -0.02 -1.10 5.59 30.11 0.17 -0.94 16 23 C -0.08 -3.34 5.39 30.66 0.17 -3.18 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 1.11 7.66 -2.39 -0.02 1.10 16 26 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 27 H 0.15 2.64 6.30 -2.91 -0.02 2.62 16 28 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 31 H 0.09 1.65 8.09 -2.38 -0.02 1.63 16 32 H 0.06 1.49 6.38 -2.39 -0.02 1.47 16 33 H 0.35 11.09 6.51 -89.69 -0.58 10.50 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 2.02 8.05 -2.39 -0.02 2.00 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.03 1.62 7.07 -2.39 -0.02 1.60 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.03 1.57 4.59 -2.39 -0.01 1.56 16 40 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.71 6.60 -2.39 -0.02 1.70 16 Total: -1.00 -66.23 324.78 3.55 -62.68 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.33 Total: 16.88 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.76 Total: -35.14 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.57 Total: -80.13 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.87 Total: -10.94 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.89 Total: 46.65 kcal Total: -66.23 3.55 -62.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.391 kcal (2) G-P(sol) polarization free energy of solvation -66.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds