Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46914 * 2 1 4 4 C 1.52996 * 112.99882 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47363 * 180.02562 * 4 3 2 6 6 C 1.39676 * 120.00062 * 179.97438 * 5 4 3 7 7 C 1.38906 * 120.07171 * 179.97438 * 6 5 4 8 8 C 1.38111 * 119.92343 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.07382 * 0.28047 * 8 7 6 10 10 C 1.50698 * 119.92407 * 179.69843 * 9 8 7 11 11 C 1.50695 * 109.47077 * 90.00107 * 10 9 8 12 12 H 1.08001 * 119.99903 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00403 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00151 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99599 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46983 * 90.00251 * 15 13 11 17 17 H 1.48500 * 109.46872 * 210.00176 * 15 13 11 18 18 H 1.48505 * 109.46970 * 330.00218 * 15 13 11 19 19 C 1.38286 * 120.14755 * 359.44532 * 9 8 7 20 20 C 1.38112 * 120.07587 * 0.55318 * 19 9 8 21 21 C 1.54029 * 113.81877 * 311.82425 * 3 2 1 22 22 O 1.44449 * 85.42509 * 91.80754 * 21 3 2 23 23 C 1.44171 * 93.37790 * 24.09119 * 22 21 3 24 24 H 1.09002 * 109.47216 * 300.00150 * 1 2 3 25 25 H 1.09004 * 109.47028 * 60.00021 * 1 2 3 26 26 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47444 * 240.00310 * 2 1 3 28 28 H 1.09000 * 109.46577 * 119.99837 * 2 1 3 29 29 H 1.08999 * 109.47280 * 59.99713 * 4 3 2 30 30 H 1.09003 * 109.47433 * 300.00308 * 4 3 2 31 31 H 0.96994 * 119.99675 * 0.02562 * 5 4 3 32 32 H 1.08000 * 120.03932 * 359.96119 * 7 6 5 33 33 H 1.08002 * 119.96028 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46776 * 210.00059 * 10 9 8 35 35 H 1.09003 * 109.47041 * 330.00009 * 10 9 8 36 36 H 0.96999 * 119.99542 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.96005 * 180.25011 * 19 9 8 38 38 H 1.07998 * 120.03717 * 179.70130 * 20 19 9 39 39 H 1.08997 * 113.86554 * 205.91684 * 21 3 2 40 40 H 1.09008 * 113.86346 * 337.62148 * 21 3 2 41 41 H 1.09005 * 113.86563 * 221.76465 * 23 22 21 42 42 H 1.09000 * 113.86691 * 90.06074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5670 1.5367 0.0006 5 7 3.9695 2.9454 0.0012 6 6 5.3244 3.2846 0.0024 7 6 5.7076 4.6198 0.0024 8 6 7.0482 4.9518 0.0041 9 6 8.0085 3.9567 -0.0001 10 6 9.4704 4.3228 -0.0051 11 6 9.9628 4.4438 1.4140 12 1 9.2850 4.2723 2.2372 13 6 11.2787 4.7724 1.6616 14 7 11.7082 4.8784 2.9000 15 14 12.4515 5.0669 0.2377 16 1 12.4229 6.5032 -0.1382 17 1 13.8288 4.6890 0.6446 18 1 12.0351 4.2425 -0.9252 19 6 7.6304 2.6266 0.0056 20 6 6.2916 2.2876 0.0040 21 6 1.3614 2.3422 -1.0501 22 8 0.4264 2.6675 0.0019 23 6 1.3613 2.3422 1.0501 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.9617 1.0461 -0.8891 30 1 3.9610 1.0463 0.8908 31 1 3.2950 3.6424 0.0015 32 1 4.9581 5.3974 0.0009 33 1 7.3469 5.9897 0.0037 34 1 10.0371 3.5481 -0.5215 35 1 9.6048 5.2748 -0.5187 36 1 12.6342 5.1092 3.0741 37 1 8.3830 1.8519 0.0064 38 1 5.9970 1.2486 0.0035 39 1 1.9742 3.1844 -1.3714 40 1 0.9186 1.7932 -1.8812 41 1 0.9185 1.7932 1.8812 42 1 1.9740 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168327790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = 7.423778 kcal Electronic energy + Delta-G solvation = -20677.005777 eV Core-core repulsion = 17622.853928 eV Total energy + Delta-G solvation = -3054.151849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42447 -38.85542 -35.72738 -33.90253 -32.86492 -31.06517 -30.27805 -29.14873 -26.96285 -26.52270 -25.41525 -23.56507 -22.46782 -21.68145 -19.98030 -18.84808 -17.57821 -16.70486 -16.46216 -16.42854 -16.02269 -14.89752 -14.87509 -14.59505 -14.14992 -14.02660 -13.63757 -13.34471 -13.10251 -12.76190 -12.58405 -12.42488 -12.39923 -12.26914 -11.81763 -11.65483 -11.51398 -11.33869 -10.73699 -10.67669 -10.61548 -10.24243 -10.14226 -9.91051 -9.82379 -9.43210 -9.10408 -8.53468 -8.29404 -6.81526 -6.02431 -4.00440 2.06458 2.28824 3.31730 3.32601 3.39262 3.42822 3.54087 3.72697 4.34606 4.45923 4.49519 4.55771 4.76727 4.92997 5.00735 5.16093 5.16378 5.23334 5.29516 5.37385 5.48440 5.49569 5.52413 5.59809 5.68725 5.74887 5.81258 5.83849 5.95539 5.99610 6.06247 6.22447 6.34438 6.62463 6.76945 7.06353 7.09202 7.17722 7.37601 7.71939 7.73461 7.78837 7.95699 8.57171 9.04300 9.58775 11.10781 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044631 B = 0.003007 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.210206 B = 9308.513291 C = 9406.727394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.137 3.863 5 N -0.759 5.759 6 C 0.184 3.816 7 C -0.192 4.192 8 C -0.077 4.077 9 C -0.079 4.079 10 C 0.019 3.981 11 C -0.509 4.509 12 H 0.073 0.927 13 C 0.066 3.934 14 N -0.903 5.903 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.078 4.078 20 C -0.193 4.193 21 C 0.041 3.959 22 O -0.376 6.376 23 C 0.041 3.959 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.392 0.608 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.428 -8.340 -7.927 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.136 4.136 4 C 0.012 3.988 5 N -0.394 5.394 6 C 0.084 3.916 7 C -0.214 4.214 8 C -0.096 4.096 9 C -0.081 4.081 10 C -0.018 4.018 11 C -0.547 4.547 12 H 0.091 0.909 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.096 4.096 20 C -0.215 4.215 21 C -0.036 4.036 22 O -0.295 6.295 23 C -0.036 4.036 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.537 -8.413 -7.817 24.408 hybrid contribution 0.702 0.415 -0.480 0.946 sum -20.835 -7.999 -8.298 23.810 Atomic orbital electron populations 1.21795 0.94744 1.01112 1.02925 1.21220 0.96633 0.92740 1.02940 1.23911 0.95415 0.97689 0.96608 1.21043 0.92287 0.83883 1.01562 1.44530 1.03897 1.05677 1.85284 1.17586 0.83315 0.93233 0.97423 1.20454 0.96377 0.93538 1.11049 1.20805 0.91536 0.99290 0.97936 1.20057 0.97112 0.92421 0.98498 1.18708 0.88495 0.96370 0.98212 1.21017 0.95763 1.47172 0.90793 0.90910 1.25022 0.98077 0.94893 0.95455 1.69909 1.16427 1.49003 1.18852 0.86805 0.80340 0.79004 0.83355 1.20246 1.21369 1.18920 1.20822 0.94583 0.96310 0.97927 1.20503 0.92674 0.97306 1.11001 1.24132 0.90021 0.97065 0.92404 1.89723 1.32687 1.90406 1.16688 1.24093 0.90011 0.97097 0.92426 0.92213 0.92265 0.92937 0.91001 0.90936 0.92047 0.91953 0.77252 0.87333 0.86479 0.95775 0.96208 0.92722 0.86541 0.87225 0.89799 0.89033 0.88999 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.63 37.16 0.32 -0.69 16 2 C -0.10 -0.65 5.65 -26.73 -0.15 -0.80 16 3 C -0.14 -1.06 1.38 -153.43 -0.21 -1.27 16 4 C 0.14 1.30 4.56 -4.04 -0.02 1.29 16 5 N -0.76 -8.78 4.88 -58.64 -0.29 -9.07 16 6 C 0.18 2.83 6.65 -83.79 -0.56 2.27 16 7 C -0.19 -3.16 9.90 -39.38 -0.39 -3.55 16 8 C -0.08 -1.48 9.69 -39.61 -0.38 -1.87 16 9 C -0.08 -1.69 5.07 -104.59 -0.53 -2.22 16 10 C 0.02 0.47 4.17 -29.04 -0.12 0.35 16 11 C -0.51 -14.66 9.65 -34.44 -0.33 -14.99 16 12 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 15 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 19 C -0.08 -1.50 9.69 -39.61 -0.38 -1.88 16 20 C -0.19 -3.16 9.31 -39.38 -0.37 -3.53 16 21 C 0.04 0.33 7.45 37.64 0.28 0.61 16 22 O -0.38 -3.73 10.87 -35.23 -0.38 -4.11 16 23 C 0.04 0.34 7.44 37.64 0.28 0.62 16 24 H 0.06 0.45 6.53 -51.93 -0.34 0.11 16 25 H 0.06 0.43 6.53 -51.93 -0.34 0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.59 7.95 -51.93 -0.41 0.17 16 30 H 0.06 0.63 7.95 -51.93 -0.41 0.21 16 31 H 0.39 4.08 5.85 -40.82 -0.24 3.84 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 35 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.11 1.54 6.73 -52.49 -0.35 1.19 16 39 H 0.08 0.70 6.69 -51.93 -0.35 0.35 16 40 H 0.09 0.65 7.33 -51.92 -0.38 0.27 16 41 H 0.09 0.70 7.33 -51.93 -0.38 0.32 16 42 H 0.08 0.74 6.68 -51.93 -0.35 0.40 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -31.46 331.75 -8.66 -40.13 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.43 Total: 2.11 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.66 Total: -23.81 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.49 Total: -36.28 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.38 Total: -4.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.46 -8.66 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168327790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.551 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds