Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46914 * 2 1 4 4 C 1.52996 * 112.99882 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47363 * 180.02562 * 4 3 2 6 6 C 1.39676 * 120.00062 * 179.97438 * 5 4 3 7 7 C 1.38906 * 120.07171 * 179.97438 * 6 5 4 8 8 C 1.38111 * 119.92343 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.07382 * 0.28047 * 8 7 6 10 10 C 1.50698 * 119.92407 * 179.69843 * 9 8 7 11 11 C 1.50695 * 109.47077 * 90.00107 * 10 9 8 12 12 H 1.08001 * 119.99903 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00403 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00151 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99599 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46983 * 90.00251 * 15 13 11 17 17 H 1.48500 * 109.46872 * 210.00176 * 15 13 11 18 18 H 1.48505 * 109.46970 * 330.00218 * 15 13 11 19 19 C 1.38286 * 120.14755 * 359.44532 * 9 8 7 20 20 C 1.38112 * 120.07587 * 0.55318 * 19 9 8 21 21 C 1.54029 * 113.81877 * 311.82425 * 3 2 1 22 22 O 1.44449 * 85.42509 * 91.80754 * 21 3 2 23 23 C 1.44171 * 93.37790 * 24.09119 * 22 21 3 24 24 H 1.09002 * 109.47216 * 300.00150 * 1 2 3 25 25 H 1.09004 * 109.47028 * 60.00021 * 1 2 3 26 26 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47444 * 240.00310 * 2 1 3 28 28 H 1.09000 * 109.46577 * 119.99837 * 2 1 3 29 29 H 1.08999 * 109.47280 * 59.99713 * 4 3 2 30 30 H 1.09003 * 109.47433 * 300.00308 * 4 3 2 31 31 H 0.96994 * 119.99675 * 0.02562 * 5 4 3 32 32 H 1.08000 * 120.03932 * 359.96119 * 7 6 5 33 33 H 1.08002 * 119.96028 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46776 * 210.00059 * 10 9 8 35 35 H 1.09003 * 109.47041 * 330.00009 * 10 9 8 36 36 H 0.96999 * 119.99542 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.96005 * 180.25011 * 19 9 8 38 38 H 1.07998 * 120.03717 * 179.70130 * 20 19 9 39 39 H 1.08997 * 113.86554 * 205.91684 * 21 3 2 40 40 H 1.09008 * 113.86346 * 337.62148 * 21 3 2 41 41 H 1.09005 * 113.86563 * 221.76465 * 23 22 21 42 42 H 1.09000 * 113.86691 * 90.06074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5670 1.5367 0.0006 5 7 3.9695 2.9454 0.0012 6 6 5.3244 3.2846 0.0024 7 6 5.7076 4.6198 0.0024 8 6 7.0482 4.9518 0.0041 9 6 8.0085 3.9567 -0.0001 10 6 9.4704 4.3228 -0.0051 11 6 9.9628 4.4438 1.4140 12 1 9.2850 4.2723 2.2372 13 6 11.2787 4.7724 1.6616 14 7 11.7082 4.8784 2.9000 15 14 12.4515 5.0669 0.2377 16 1 12.4229 6.5032 -0.1382 17 1 13.8288 4.6890 0.6446 18 1 12.0351 4.2425 -0.9252 19 6 7.6304 2.6266 0.0056 20 6 6.2916 2.2876 0.0040 21 6 1.3614 2.3422 -1.0501 22 8 0.4264 2.6675 0.0019 23 6 1.3613 2.3422 1.0501 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.9617 1.0461 -0.8891 30 1 3.9610 1.0463 0.8908 31 1 3.2950 3.6424 0.0015 32 1 4.9581 5.3974 0.0009 33 1 7.3469 5.9897 0.0037 34 1 10.0371 3.5481 -0.5215 35 1 9.6048 5.2748 -0.5187 36 1 12.6342 5.1092 3.0741 37 1 8.3830 1.8519 0.0064 38 1 5.9970 1.2486 0.0035 39 1 1.9742 3.1844 -1.3714 40 1 0.9186 1.7932 -1.8812 41 1 0.9185 1.7932 1.8812 42 1 1.9740 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168327790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = -11.443272 kcal Electronic energy + Delta-G solvation = -20677.823914 eV Core-core repulsion = 17622.853928 eV Total energy + Delta-G solvation = -3054.969986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11261 -40.18081 -36.90968 -35.09334 -34.37777 -32.57226 -31.66865 -30.29045 -27.96636 -27.60015 -26.30549 -24.59815 -23.95894 -22.98849 -21.44513 -19.49678 -18.92715 -18.59354 -17.25391 -17.11458 -17.06221 -16.46953 -15.91992 -15.69311 -15.43803 -15.01098 -14.91163 -14.65887 -14.25437 -14.09065 -13.90861 -13.72965 -13.40128 -13.22085 -13.12385 -12.86460 -12.47123 -12.39224 -12.21877 -11.97504 -11.71533 -11.63086 -11.47405 -11.33924 -11.30443 -10.76215 -10.56003 -10.49940 -9.68395 -8.28082 -8.07617 -6.31256 0.67222 0.87226 1.37419 1.39192 1.51744 2.37636 2.48901 2.74753 3.07072 3.08034 3.14307 3.70918 3.83449 4.11479 4.15564 4.23574 4.35505 4.40151 4.44935 4.56462 4.59376 4.64332 4.70784 4.72682 4.75796 4.76376 4.95188 5.04086 5.11633 5.12585 5.13973 5.18669 5.22158 5.26934 5.34871 5.47977 5.52066 5.61615 5.69345 6.03317 6.16627 6.31770 6.55103 6.75637 6.86444 7.32140 8.89607 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044631 B = 0.003007 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.210206 B = 9308.513291 C = 9406.727394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.123 4.123 4 C 0.134 3.866 5 N -0.746 5.746 6 C 0.199 3.801 7 C -0.194 4.194 8 C -0.089 4.089 9 C -0.122 4.122 10 C 0.027 3.973 11 C -0.516 4.516 12 H 0.025 0.975 13 C 0.004 3.996 14 N -0.952 5.952 15 Si 0.952 3.048 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.246 1.246 19 C -0.089 4.089 20 C -0.193 4.193 21 C 0.038 3.962 22 O -0.394 6.394 23 C 0.036 3.964 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.026 0.974 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.904 -9.242 -9.755 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.123 4.123 4 C 0.010 3.990 5 N -0.379 5.379 6 C 0.097 3.903 7 C -0.216 4.216 8 C -0.108 4.108 9 C -0.124 4.124 10 C -0.010 4.010 11 C -0.554 4.554 12 H 0.044 0.956 13 C -0.192 4.192 14 N -0.593 5.593 15 Si 0.775 3.225 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.170 1.170 19 C -0.108 4.108 20 C -0.216 4.216 21 C -0.038 4.038 22 O -0.313 6.313 23 C -0.041 4.041 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.070 -9.328 -9.656 26.692 hybrid contribution 0.951 0.646 0.168 1.162 sum -22.119 -8.682 -9.488 25.586 Atomic orbital electron populations 1.21760 0.94854 1.01511 1.02185 1.21243 0.96428 0.91876 1.03790 1.23826 0.93977 0.98398 0.96116 1.21198 0.93502 0.82366 1.01958 1.44597 1.02489 1.07178 1.83661 1.17664 0.84836 0.92679 0.95103 1.20667 0.95710 0.94907 1.10357 1.20876 0.92649 0.98821 0.98420 1.19921 0.95781 0.94021 1.02643 1.18540 0.90909 0.96519 0.95061 1.21265 0.95356 1.46715 0.92085 0.95627 1.26021 1.00148 0.94532 0.98548 1.70070 1.17169 1.50562 1.21526 0.85632 0.77446 0.79619 0.79814 1.19054 1.20847 1.16958 1.20898 0.96083 0.95441 0.98345 1.20696 0.91600 0.98942 1.10317 1.24238 0.89835 0.97179 0.92570 1.89719 1.33508 1.90579 1.17503 1.24173 0.89971 0.97217 0.92710 0.93088 0.92850 0.91992 0.89953 0.90313 0.91203 0.91875 0.76268 0.84706 0.86774 0.95617 0.95795 0.92465 0.86791 0.84582 0.89912 0.87879 0.88221 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.63 71.98 0.62 -1.03 16 2 C -0.10 -0.99 5.65 30.60 0.17 -0.82 16 3 C -0.12 -1.58 1.38 -51.48 -0.07 -1.65 16 4 C 0.13 2.12 4.56 86.38 0.39 2.51 16 5 N -0.75 -15.06 4.88 -339.43 -1.66 -16.72 16 6 C 0.20 5.67 6.65 38.21 0.25 5.93 16 7 C -0.19 -6.07 9.90 22.40 0.22 -5.85 16 8 C -0.09 -3.43 9.69 22.25 0.22 -3.21 16 9 C -0.12 -5.27 5.07 -19.84 -0.10 -5.37 16 10 C 0.03 1.33 4.17 29.10 0.12 1.45 16 11 C -0.52 -30.83 9.65 25.60 0.25 -30.58 16 12 H 0.03 1.71 7.98 -2.91 -0.02 1.68 16 13 C 0.00 0.23 5.47 84.66 0.46 0.69 16 14 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 15 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 19 C -0.09 -3.41 9.69 22.25 0.22 -3.20 16 20 C -0.19 -6.00 9.31 22.40 0.21 -5.79 16 21 C 0.04 0.53 7.45 72.29 0.54 1.07 16 22 O -0.39 -7.04 10.87 -148.98 -1.62 -8.66 16 23 C 0.04 0.53 7.44 72.30 0.54 1.07 16 24 H 0.05 0.67 6.53 -2.39 -0.02 0.65 16 25 H 0.05 0.67 6.53 -2.38 -0.02 0.65 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.06 7.95 -2.39 -0.02 1.05 16 30 H 0.06 1.06 7.95 -2.39 -0.02 1.04 16 31 H 0.40 7.13 5.85 -92.71 -0.54 6.59 16 32 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 34 H 0.03 1.23 7.14 -2.39 -0.02 1.22 16 35 H 0.02 1.14 7.51 -2.39 -0.02 1.12 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.14 3.43 6.73 -2.91 -0.02 3.41 16 39 H 0.08 1.15 6.69 -2.39 -0.02 1.14 16 40 H 0.10 1.19 7.33 -2.38 -0.02 1.17 16 41 H 0.10 1.31 7.33 -2.38 -0.02 1.30 16 42 H 0.08 1.24 6.68 -2.39 -0.02 1.23 16 Total: -1.00 -69.85 331.75 3.36 -66.49 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.41 Total: 17.50 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 4.04 Total: -44.77 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.36 Total: -77.35 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.62 Total: -8.66 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -69.85 3.36 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168327790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.049 kcal (2) G-P(sol) polarization free energy of solvation -69.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds