Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46916 * 2 1 4 4 C 1.53000 * 112.99897 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47461 * 180.02562 * 4 3 2 6 6 C 1.38867 * 120.00310 * 180.02562 * 5 4 3 7 7 C 1.39583 * 119.84102 * 359.97438 * 6 5 4 8 8 C 1.36322 * 120.16089 * 179.97438 * 7 6 5 9 9 C 1.40905 * 119.83353 * 0.02562 * 8 7 6 10 10 C 1.41141 * 120.15057 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99775 * 154.55939 * 10 9 8 12 12 C 1.39865 * 120.00139 * 334.55439 * 10 9 8 13 13 N 1.30909 * 119.99937 * 343.02593 * 12 10 9 14 14 Si 1.86795 * 119.99956 * 163.03261 * 12 10 9 15 15 H 1.48494 * 109.47038 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47322 * 120.00026 * 14 12 10 17 17 H 1.48508 * 109.46992 * 239.99867 * 14 12 10 18 18 C 1.40863 * 119.69229 * 359.97438 * 9 8 7 19 19 C 1.36363 * 119.83322 * 359.71731 * 18 9 8 20 20 C 1.50705 * 119.91654 * 180.29895 * 19 18 9 21 21 C 1.54037 * 113.81979 * 311.82528 * 3 2 1 22 22 O 1.44448 * 85.42428 * 91.81097 * 21 3 2 23 23 C 1.44176 * 93.37843 * 24.09071 * 22 21 3 24 24 H 1.09001 * 109.47308 * 60.00097 * 1 2 3 25 25 H 1.09000 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47188 * 300.00072 * 1 2 3 27 27 H 1.09001 * 109.47188 * 239.99928 * 2 1 3 28 28 H 1.09005 * 109.46995 * 120.00282 * 2 1 3 29 29 H 1.08999 * 109.47513 * 59.99361 * 4 3 2 30 30 H 1.09011 * 109.47191 * 299.99921 * 4 3 2 31 31 H 0.97001 * 119.99825 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.91810 * 359.97438 * 7 6 5 33 33 H 1.08002 * 120.08362 * 180.02562 * 8 7 6 34 34 H 0.96999 * 119.99558 * 179.97438 * 13 12 10 35 35 H 1.07993 * 120.08376 * 180.02562 * 18 9 8 36 36 H 1.09004 * 109.46777 * 270.23535 * 20 19 18 37 37 H 1.08995 * 109.47131 * 30.23995 * 20 19 18 38 38 H 1.08999 * 109.47108 * 150.24184 * 20 19 18 39 39 H 1.09002 * 113.86345 * 205.91813 * 21 3 2 40 40 H 1.09003 * 113.86037 * 337.62013 * 21 3 2 41 41 H 1.09008 * 113.86198 * 221.76518 * 23 22 21 42 42 H 1.08996 * 113.86419 * 90.06418 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5670 1.5367 -0.0006 5 7 3.9694 2.9453 0.0000 6 6 5.3165 3.2826 -0.0009 7 6 6.2844 2.2768 -0.0019 8 6 7.6086 2.6005 -0.0034 9 6 7.9992 3.9544 -0.0033 10 6 9.3684 4.2971 -0.0043 11 1 9.6868 5.2477 -0.4060 12 6 10.3128 3.4058 0.5152 13 7 9.9287 2.4235 1.2905 14 14 12.1224 3.6172 0.1026 15 1 12.2932 4.7946 -0.7861 16 1 12.8944 3.8249 1.3541 17 1 12.6180 2.3998 -0.5885 18 6 7.0170 4.9640 -0.0023 19 6 5.6961 4.6254 -0.0072 20 6 4.6436 5.7040 -0.0129 21 6 1.3613 2.3422 -1.0501 22 8 0.4264 2.6675 0.0019 23 6 1.3613 2.3422 1.0501 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9610 1.0462 -0.8908 30 1 3.9617 1.0460 0.8892 31 1 3.2949 3.6424 0.0004 32 1 5.9834 1.2396 -0.0016 33 1 8.3564 1.8213 -0.0046 34 1 10.5837 1.8052 1.6505 35 1 7.3093 6.0036 -0.0026 36 1 4.3888 5.9684 1.0134 37 1 5.0274 6.5834 -0.5300 38 1 3.7534 5.3404 -0.5261 39 1 1.9741 3.1844 -1.3714 40 1 0.9186 1.7932 -1.8812 41 1 0.9185 1.7932 1.8812 42 1 1.9741 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168330668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 2.941500 kcal Electronic energy + Delta-G solvation = -21320.113925 eV Core-core repulsion = 18265.767709 eV Total energy + Delta-G solvation = -3054.346216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11543 -38.15415 -35.15152 -33.81111 -32.89179 -31.29913 -29.81691 -28.06159 -26.68828 -25.79620 -25.28143 -24.27008 -22.93652 -20.29175 -19.96616 -18.52685 -17.10487 -16.73621 -16.15475 -16.12011 -15.23274 -14.96785 -14.62894 -14.35071 -13.69653 -13.57544 -13.17977 -12.84513 -12.76964 -12.57466 -12.28979 -12.09630 -11.83574 -11.77613 -11.67370 -11.51413 -11.36059 -11.02992 -10.90402 -10.65381 -10.52600 -10.33250 -10.28282 -9.66229 -9.55968 -9.28763 -9.22424 -8.53667 -7.35840 -6.62132 -6.36625 -4.04065 2.90416 3.04939 3.15452 3.20964 3.33297 3.62916 4.04658 4.05893 4.20092 4.66819 4.74835 4.87695 5.06080 5.15879 5.30905 5.40868 5.40912 5.52950 5.72004 5.73989 5.86219 5.88255 5.90840 5.99662 6.03481 6.06135 6.10317 6.15064 6.19646 6.29450 6.33872 6.54670 6.87284 6.95140 7.23160 7.38433 7.55025 7.70673 7.84329 8.15901 8.28981 8.46910 8.66619 8.79035 9.06453 9.15046 10.38216 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033363 B = 0.003833 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.063221 B = 7303.929650 C = 7922.767004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.135 4.135 4 C 0.145 3.855 5 N -0.762 5.762 6 C 0.096 3.904 7 C -0.162 4.162 8 C -0.125 4.125 9 C 0.077 3.923 10 C -0.467 4.467 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.809 5.809 14 Si 0.902 3.098 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.183 4.183 19 C -0.133 4.133 20 C -0.094 4.094 21 C 0.041 3.959 22 O -0.379 6.379 23 C 0.041 3.959 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.383 0.617 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.275 0.725 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 -3.850 -1.874 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.136 4.136 4 C 0.020 3.980 5 N -0.401 5.401 6 C -0.001 4.001 7 C -0.183 4.183 8 C -0.145 4.145 9 C 0.074 3.926 10 C -0.498 4.498 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.436 5.436 14 Si 0.727 3.273 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.200 1.200 18 C -0.203 4.203 19 C -0.137 4.137 20 C -0.151 4.151 21 C -0.036 4.036 22 O -0.298 6.298 23 C -0.036 4.036 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.219 0.781 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.795 -4.132 -1.733 14.505 hybrid contribution 0.929 0.157 -0.028 0.943 sum -12.867 -3.974 -1.761 13.581 Atomic orbital electron populations 1.21790 0.94992 1.00846 1.02832 1.21209 0.96355 0.93147 1.02801 1.23879 0.96225 0.97171 0.96280 1.20859 0.91172 0.85163 1.00855 1.44068 1.04326 1.04246 1.87431 1.17111 0.82641 0.92387 1.07933 1.20075 0.93342 0.95685 1.09245 1.20931 0.93619 0.97136 1.02763 1.17479 0.92831 0.91018 0.91274 1.19392 0.91246 1.02917 1.36243 0.90959 1.25786 1.01011 0.94367 0.92876 1.69863 1.36163 1.13904 1.23712 0.86369 0.82644 0.79216 0.79044 1.18653 1.20291 1.19993 1.20446 0.91436 0.97639 1.10815 1.18638 0.94352 0.91341 1.09335 1.20486 0.97037 0.97419 1.00190 1.24126 0.89909 0.97265 0.92272 1.89681 1.32850 1.90470 1.16822 1.24077 0.89906 0.97279 0.92295 0.92324 0.93152 0.92312 0.91122 0.91091 0.92918 0.92838 0.78080 0.89404 0.86454 0.91427 0.89057 0.93215 0.92810 0.93908 0.89725 0.89297 0.89312 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.63 37.16 0.32 -1.02 16 2 C -0.10 -0.93 5.65 -26.74 -0.15 -1.08 16 3 C -0.13 -1.53 1.38 -153.43 -0.21 -1.74 16 4 C 0.15 2.06 4.53 -4.04 -0.02 2.04 16 5 N -0.76 -12.74 4.75 -58.50 -0.28 -13.02 16 6 C 0.10 2.05 6.65 -83.69 -0.56 1.49 16 7 C -0.16 -3.73 9.23 -39.77 -0.37 -4.10 16 8 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 9 C 0.08 2.07 5.57 -106.79 -0.59 1.47 16 10 C -0.47 -12.67 9.03 -37.87 -0.34 -13.02 16 11 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 12 C 0.07 1.92 5.14 -17.34 -0.09 1.83 16 13 N -0.81 -21.47 10.96 55.54 0.61 -20.86 16 14 Si 0.90 19.25 29.59 -169.99 -5.03 14.22 16 15 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 C -0.18 -4.50 9.37 -39.26 -0.37 -4.87 16 19 C -0.13 -2.91 5.86 -104.81 -0.61 -3.52 16 20 C -0.09 -1.64 9.55 36.01 0.34 -1.30 16 21 C 0.04 0.47 7.45 37.64 0.28 0.75 16 22 O -0.38 -4.79 10.87 -35.23 -0.38 -5.17 16 23 C 0.04 0.48 7.44 37.64 0.28 0.76 16 24 H 0.06 0.56 6.53 -51.93 -0.34 0.22 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.56 6.53 -51.93 -0.34 0.23 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.05 0.80 7.93 -51.92 -0.41 0.39 16 31 H 0.38 5.89 3.80 -40.82 -0.15 5.74 16 32 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 33 H 0.12 3.18 6.19 -52.49 -0.32 2.86 16 34 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.88 8.08 -51.93 -0.42 0.47 16 38 H 0.04 0.66 6.54 -51.93 -0.34 0.32 16 39 H 0.08 1.03 6.68 -51.93 -0.35 0.68 16 40 H 0.09 0.89 7.33 -51.93 -0.38 0.51 16 41 H 0.09 0.91 7.33 -51.92 -0.38 0.53 16 42 H 0.09 1.05 6.68 -51.93 -0.35 0.71 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -28.07 326.65 -8.80 -36.87 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.21 Total: 8.91 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -2.43 Total: -25.88 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.33 Total: -33.87 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.07 -8.80 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168330668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.811 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds