Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46916 * 2 1 4 4 C 1.53000 * 112.99897 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47461 * 180.02562 * 4 3 2 6 6 C 1.38867 * 120.00310 * 180.02562 * 5 4 3 7 7 C 1.39583 * 119.84102 * 359.97438 * 6 5 4 8 8 C 1.36322 * 120.16089 * 179.97438 * 7 6 5 9 9 C 1.40905 * 119.83353 * 0.02562 * 8 7 6 10 10 C 1.41141 * 120.15057 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99775 * 154.55939 * 10 9 8 12 12 C 1.39865 * 120.00139 * 334.55439 * 10 9 8 13 13 N 1.30909 * 119.99937 * 343.02593 * 12 10 9 14 14 Si 1.86795 * 119.99956 * 163.03261 * 12 10 9 15 15 H 1.48494 * 109.47038 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47322 * 120.00026 * 14 12 10 17 17 H 1.48508 * 109.46992 * 239.99867 * 14 12 10 18 18 C 1.40863 * 119.69229 * 359.97438 * 9 8 7 19 19 C 1.36363 * 119.83322 * 359.71731 * 18 9 8 20 20 C 1.50705 * 119.91654 * 180.29895 * 19 18 9 21 21 C 1.54037 * 113.81979 * 311.82528 * 3 2 1 22 22 O 1.44448 * 85.42428 * 91.81097 * 21 3 2 23 23 C 1.44176 * 93.37843 * 24.09071 * 22 21 3 24 24 H 1.09001 * 109.47308 * 60.00097 * 1 2 3 25 25 H 1.09000 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47188 * 300.00072 * 1 2 3 27 27 H 1.09001 * 109.47188 * 239.99928 * 2 1 3 28 28 H 1.09005 * 109.46995 * 120.00282 * 2 1 3 29 29 H 1.08999 * 109.47513 * 59.99361 * 4 3 2 30 30 H 1.09011 * 109.47191 * 299.99921 * 4 3 2 31 31 H 0.97001 * 119.99825 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.91810 * 359.97438 * 7 6 5 33 33 H 1.08002 * 120.08362 * 180.02562 * 8 7 6 34 34 H 0.96999 * 119.99558 * 179.97438 * 13 12 10 35 35 H 1.07993 * 120.08376 * 180.02562 * 18 9 8 36 36 H 1.09004 * 109.46777 * 270.23535 * 20 19 18 37 37 H 1.08995 * 109.47131 * 30.23995 * 20 19 18 38 38 H 1.08999 * 109.47108 * 150.24184 * 20 19 18 39 39 H 1.09002 * 113.86345 * 205.91813 * 21 3 2 40 40 H 1.09003 * 113.86037 * 337.62013 * 21 3 2 41 41 H 1.09008 * 113.86198 * 221.76518 * 23 22 21 42 42 H 1.08996 * 113.86419 * 90.06418 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5670 1.5367 -0.0006 5 7 3.9694 2.9453 0.0000 6 6 5.3165 3.2826 -0.0009 7 6 6.2844 2.2768 -0.0019 8 6 7.6086 2.6005 -0.0034 9 6 7.9992 3.9544 -0.0033 10 6 9.3684 4.2971 -0.0043 11 1 9.6868 5.2477 -0.4060 12 6 10.3128 3.4058 0.5152 13 7 9.9287 2.4235 1.2905 14 14 12.1224 3.6172 0.1026 15 1 12.2932 4.7946 -0.7861 16 1 12.8944 3.8249 1.3541 17 1 12.6180 2.3998 -0.5885 18 6 7.0170 4.9640 -0.0023 19 6 5.6961 4.6254 -0.0072 20 6 4.6436 5.7040 -0.0129 21 6 1.3613 2.3422 -1.0501 22 8 0.4264 2.6675 0.0019 23 6 1.3613 2.3422 1.0501 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9610 1.0462 -0.8908 30 1 3.9617 1.0460 0.8892 31 1 3.2949 3.6424 0.0004 32 1 5.9834 1.2396 -0.0016 33 1 8.3564 1.8213 -0.0046 34 1 10.5837 1.8052 1.6505 35 1 7.3093 6.0036 -0.0026 36 1 4.3888 5.9684 1.0134 37 1 5.0274 6.5834 -0.5300 38 1 3.7534 5.3404 -0.5261 39 1 1.9741 3.1844 -1.3714 40 1 0.9186 1.7932 -1.8812 41 1 0.9185 1.7932 1.8812 42 1 1.9741 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168330668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = -11.963511 kcal Electronic energy + Delta-G solvation = -21320.760255 eV Core-core repulsion = 18265.767709 eV Total energy + Delta-G solvation = -3054.992545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07664 -39.89216 -36.73572 -35.19414 -34.15687 -33.03158 -31.29545 -29.49654 -27.58729 -27.50485 -26.51539 -25.79112 -24.02348 -21.98974 -21.73219 -19.46262 -18.79610 -18.33486 -17.18886 -17.07529 -16.85039 -16.62015 -15.75297 -15.42392 -15.29330 -14.99157 -14.53210 -14.29027 -14.16993 -13.88522 -13.61057 -13.51663 -13.20114 -13.15039 -12.85423 -12.76478 -12.71924 -12.50388 -12.34364 -12.12735 -12.11303 -11.48082 -11.31497 -11.30659 -11.15794 -11.02496 -10.47698 -10.28010 -9.21900 -8.52469 -8.11420 -6.00655 1.11465 1.16890 1.39954 1.54080 1.57650 2.27689 2.69167 2.83393 2.89625 3.13375 3.75845 3.82835 3.90992 4.17229 4.35142 4.38081 4.41184 4.42004 4.56807 4.63111 4.64799 4.70249 4.76814 4.80519 4.91051 5.00555 5.04571 5.10009 5.12934 5.13828 5.17036 5.22801 5.28177 5.32963 5.48942 5.53660 5.71286 5.88239 5.99619 6.21652 6.42154 6.67748 6.87772 7.09866 7.12617 7.29665 8.49552 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033363 B = 0.003833 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.063221 B = 7303.929650 C = 7922.767004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.124 4.124 4 C 0.143 3.857 5 N -0.749 5.749 6 C 0.114 3.886 7 C -0.171 4.171 8 C -0.146 4.146 9 C 0.038 3.962 10 C -0.506 4.506 11 H 0.065 0.935 12 C 0.032 3.968 13 N -0.843 5.843 14 Si 0.975 3.025 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.267 1.267 18 C -0.195 4.195 19 C -0.142 4.142 20 C -0.089 4.089 21 C 0.040 3.960 22 O -0.389 6.389 23 C 0.039 3.961 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.393 0.607 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 -4.147 -2.144 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.125 4.125 4 C 0.018 3.982 5 N -0.388 5.388 6 C 0.014 3.986 7 C -0.193 4.193 8 C -0.167 4.167 9 C 0.035 3.965 10 C -0.537 4.537 11 H 0.084 0.916 12 C -0.180 4.180 13 N -0.471 5.471 14 Si 0.797 3.203 15 H -0.185 1.185 16 H -0.194 1.194 17 H -0.191 1.191 18 C -0.215 4.215 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.037 4.037 22 O -0.308 6.308 23 C -0.038 4.038 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.231 0.769 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.585 -4.430 -2.005 16.325 hybrid contribution 1.254 0.241 0.060 1.278 sum -14.331 -4.188 -1.945 15.056 Atomic orbital electron populations 1.21746 0.94371 1.01595 1.02309 1.21238 0.96757 0.91809 1.03525 1.23839 0.93772 0.98485 0.96364 1.20983 0.93416 0.83302 1.00529 1.44084 1.02613 1.05973 1.86083 1.17219 0.84375 0.91934 1.05030 1.20231 0.92701 0.97142 1.09260 1.20836 0.94545 0.96494 1.04785 1.17799 0.93590 0.91995 0.93089 1.19604 0.92379 1.03584 1.38177 0.91645 1.26585 1.05371 0.93813 0.92184 1.69927 1.37818 1.14817 1.24566 0.85265 0.76829 0.79244 0.78933 1.18519 1.19393 1.19138 1.20644 0.92524 0.97377 1.10942 1.19085 0.94541 0.93009 1.07988 1.20497 0.96311 0.96279 1.01515 1.24199 0.89746 0.97101 0.92613 1.89684 1.33263 1.90574 1.17318 1.24136 0.89811 0.97116 0.92692 0.92752 0.91821 0.92877 0.90340 0.90526 0.92974 0.93350 0.76896 0.87693 0.88523 0.90857 0.88879 0.91888 0.91849 0.91696 0.90393 0.87691 0.87887 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.63 71.98 0.62 -1.57 16 2 C -0.10 -1.55 5.65 30.59 0.17 -1.38 16 3 C -0.12 -2.49 1.38 -51.48 -0.07 -2.56 16 4 C 0.14 3.74 4.53 86.38 0.39 4.13 16 5 N -0.75 -23.46 4.75 -338.98 -1.61 -25.07 16 6 C 0.11 4.72 6.65 38.67 0.26 4.98 16 7 C -0.17 -7.95 9.23 22.15 0.20 -7.75 16 8 C -0.15 -7.92 8.63 22.48 0.19 -7.73 16 9 C 0.04 2.13 5.57 -21.27 -0.12 2.01 16 10 C -0.51 -28.71 9.03 23.38 0.21 -28.50 16 11 H 0.07 3.62 7.90 -2.91 -0.02 3.60 16 12 C 0.03 1.70 5.14 85.22 0.44 2.14 16 13 N -0.84 -46.33 10.96 21.82 0.24 -46.09 16 14 Si 0.98 40.48 29.59 68.60 2.03 42.51 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 18 C -0.19 -9.75 9.37 22.47 0.21 -9.54 16 19 C -0.14 -6.09 5.86 -19.99 -0.12 -6.21 16 20 C -0.09 -2.89 9.55 71.24 0.68 -2.20 16 21 C 0.04 0.81 7.45 72.30 0.54 1.34 16 22 O -0.39 -8.81 10.87 -148.98 -1.62 -10.43 16 23 C 0.04 0.81 7.44 72.30 0.54 1.35 16 24 H 0.05 0.88 6.53 -2.39 -0.02 0.87 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.88 6.53 -2.39 -0.02 0.86 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.05 1.42 7.93 -2.39 -0.02 1.40 16 30 H 0.05 1.36 7.93 -2.38 -0.02 1.34 16 31 H 0.39 10.99 3.80 -92.71 -0.35 10.64 16 32 H 0.11 4.39 6.68 -2.91 -0.02 4.37 16 33 H 0.10 5.53 6.19 -2.91 -0.02 5.51 16 34 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 35 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 38 H 0.06 1.80 6.54 -2.39 -0.02 1.78 16 39 H 0.08 1.68 6.68 -2.39 -0.02 1.66 16 40 H 0.11 1.79 7.33 -2.39 -0.02 1.77 16 41 H 0.10 1.84 7.33 -2.38 -0.02 1.82 16 42 H 0.08 1.71 6.68 -2.39 -0.02 1.69 16 Total: -1.00 -62.30 326.65 3.86 -58.44 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.67 Total: 32.12 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 4.15 Total: -51.48 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.37 Total: -71.16 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.62 Total: -10.43 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -62.30 3.86 -58.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168330668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.479 kcal (2) G-P(sol) polarization free energy of solvation -62.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds