Wall clock time and date at job start Mon Mar 30 2020 01:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 112.91057 * 2 1 4 4 C 1.53784 * 113.61270 * 228.74557 * 2 1 3 5 5 C 1.53778 * 87.08081 * 270.88614 * 4 2 1 6 6 H 1.08999 * 113.69218 * 89.12660 * 5 4 2 7 7 C 1.53001 * 113.61526 * 220.01868 * 5 4 2 8 8 N 1.46505 * 109.47164 * 272.50042 * 7 5 4 9 9 C 1.39676 * 119.99719 * 179.97438 * 8 7 5 10 10 C 1.38907 * 120.07613 * 359.72203 * 9 8 7 11 11 C 1.38105 * 119.92556 * 179.76894 * 10 9 8 12 12 C 1.38288 * 120.06982 * 0.50915 * 11 10 9 13 13 C 1.50703 * 119.92265 * 179.76994 * 12 11 10 14 14 C 1.50704 * 109.46810 * 269.97654 * 13 12 11 15 15 H 1.08004 * 120.00163 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00137 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00246 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00275 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47373 * 89.99418 * 18 16 14 20 20 H 1.48503 * 109.47265 * 209.99589 * 18 16 14 21 21 H 1.48506 * 109.46960 * 329.99140 * 18 16 14 22 22 C 1.38284 * 120.15389 * 359.73993 * 12 11 10 23 23 C 1.38106 * 120.07345 * 0.02562 * 22 12 11 24 24 C 1.53778 * 87.08449 * 334.56700 * 5 4 2 25 25 H 1.09003 * 109.47316 * 288.75327 * 1 2 3 26 26 H 1.09000 * 109.47118 * 48.74730 * 1 2 3 27 27 H 1.08999 * 109.47534 * 168.74998 * 1 2 3 28 28 H 0.96699 * 113.99840 * 311.24594 * 3 2 1 29 29 H 1.08993 * 113.61313 * 25.43210 * 4 2 1 30 30 H 1.09000 * 113.61578 * 156.33942 * 4 2 1 31 31 H 1.09008 * 109.46870 * 32.49758 * 7 5 4 32 32 H 1.09000 * 109.47055 * 152.49586 * 7 5 4 33 33 H 0.96988 * 119.99988 * 359.97438 * 8 7 5 34 34 H 1.08004 * 120.04301 * 0.02562 * 10 9 8 35 35 H 1.07994 * 119.96958 * 180.25095 * 11 10 9 36 36 H 1.08991 * 109.47579 * 29.97215 * 13 12 11 37 37 H 1.08995 * 109.47086 * 149.97879 * 13 12 11 38 38 H 0.96998 * 120.00607 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.96646 * 179.97438 * 22 12 11 40 40 H 1.07996 * 120.03975 * 180.02562 * 23 22 12 41 41 H 1.08998 * 113.61879 * 270.88747 * 24 5 4 42 42 H 1.08999 * 113.61887 * 139.97854 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0863 1.3162 0.0000 4 6 2.1460 -0.9292 -1.0593 5 6 2.0928 -2.0426 0.0000 6 1 1.1573 -2.6019 0.0011 7 6 3.3262 -2.9479 0.0001 8 7 3.1296 -4.0412 -0.9550 9 6 4.1278 -5.0021 -1.1318 10 6 5.3099 -4.9193 -0.4071 11 6 6.2929 -5.8737 -0.5808 12 6 6.1055 -6.9051 -1.4828 13 6 7.1825 -7.9418 -1.6735 14 6 8.1220 -7.4954 -2.7640 15 1 7.9556 -6.5552 -3.2688 16 6 9.1934 -8.2877 -3.1181 17 7 9.3958 -9.4328 -2.5039 18 14 10.3575 -7.7346 -4.4703 19 1 11.4613 -6.9374 -3.8778 20 1 10.9200 -8.9253 -5.1568 21 1 9.6165 -6.9017 -5.4514 22 6 4.9321 -6.9876 -2.2097 23 6 3.9430 -6.0392 -2.0373 24 6 2.1460 -0.9291 1.0594 25 1 -0.3634 0.3304 0.9731 26 1 -0.3633 0.6776 -0.7726 27 1 -0.3634 -1.0079 -0.2005 28 1 1.7029 1.9052 -0.6642 29 1 1.4944 -1.1087 -1.9145 30 1 3.1590 -0.6501 -1.3490 31 1 4.2030 -2.3675 -0.2875 32 1 3.4746 -3.3597 0.9983 33 1 2.3062 -4.0978 -1.4646 34 1 5.4586 -4.1118 0.2946 35 1 7.2105 -5.8123 -0.0148 36 1 7.7376 -8.0645 -0.7436 37 1 6.7269 -8.8918 -1.9529 38 1 10.1497 -9.9901 -2.7527 39 1 4.7891 -7.7941 -2.9136 40 1 3.0266 -6.1045 -2.6050 41 1 3.1590 -0.6499 1.3490 42 1 1.4944 -1.1086 1.9146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168347139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:32 Heat of formation + Delta-G solvation = -39.852280 kcal Electronic energy + Delta-G solvation = -20167.889831 eV Core-core repulsion = 17111.687938 eV Total energy + Delta-G solvation = -3056.201893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98900 -40.12415 -37.13634 -35.81452 -34.83409 -32.25196 -31.63212 -30.31033 -28.42278 -26.86808 -26.63214 -24.58992 -23.79541 -22.34720 -21.48586 -19.89253 -18.48371 -18.16864 -17.65407 -16.89893 -16.68274 -16.27939 -15.84952 -15.55224 -15.50166 -14.74284 -14.61241 -14.48532 -14.32617 -14.09382 -13.72729 -13.46096 -13.19159 -13.06655 -12.99980 -12.87969 -12.55056 -12.41528 -12.29774 -12.11048 -11.80997 -11.61554 -11.54827 -11.34285 -11.21034 -10.65250 -10.58154 -10.50396 -9.67975 -8.29769 -7.94527 -6.30104 0.67628 0.89450 1.39521 1.40946 1.52567 2.41521 2.56171 3.12654 3.16388 3.29375 3.54367 3.59139 3.78229 3.86949 4.11929 4.22150 4.26215 4.37545 4.51552 4.57832 4.74220 4.75626 4.77060 4.78444 4.79565 4.87640 4.92689 5.03160 5.09357 5.17650 5.20251 5.31632 5.37504 5.40811 5.48628 5.56339 5.70563 5.81513 6.04307 6.23873 6.25281 6.58784 6.83228 6.90369 7.00549 7.38147 8.92157 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002781 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.590300 B =10066.887626 C =10401.879779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 O -0.575 6.575 4 C -0.156 4.156 5 C -0.107 4.107 6 H 0.114 0.886 7 C 0.139 3.861 8 N -0.741 5.741 9 C 0.197 3.803 10 C -0.196 4.196 11 C -0.091 4.091 12 C -0.124 4.124 13 C 0.063 3.937 14 C -0.525 4.525 15 H 0.052 0.948 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.089 4.089 23 C -0.190 4.190 24 C -0.119 4.119 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.390 0.610 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.406 0.594 34 H 0.131 0.869 35 H 0.108 0.892 36 H -0.003 1.003 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.869 19.808 4.673 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 O -0.383 6.383 4 C -0.194 4.194 5 C -0.126 4.126 6 H 0.132 0.868 7 C 0.015 3.985 8 N -0.373 5.373 9 C 0.095 3.905 10 C -0.219 4.219 11 C -0.109 4.109 12 C -0.126 4.126 13 C 0.026 3.974 14 C -0.563 4.563 15 H 0.070 0.930 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.108 4.108 23 C -0.212 4.212 24 C -0.157 4.157 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.240 0.760 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.015 0.985 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.098 0.902 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.361 19.569 5.305 28.734 hybrid contribution 0.588 -0.117 -1.191 1.333 sum -19.773 19.452 4.114 28.041 Atomic orbital electron populations 1.22140 0.92157 1.03920 1.03260 1.22722 0.93446 0.81484 0.96543 1.86533 1.66220 1.23547 1.62003 1.23738 1.01792 0.96134 0.97690 1.22480 0.98558 0.94063 0.97468 0.86836 1.21269 0.97488 0.87328 0.92409 1.44419 1.18588 1.27086 1.47215 1.17696 0.89195 0.89589 0.94064 1.20663 0.94243 1.01915 1.05049 1.20827 0.98351 0.94098 0.97663 1.20139 0.96003 0.98384 0.98028 1.17981 0.91723 0.92287 0.95388 1.21448 1.10457 1.05237 1.19196 0.92999 1.25960 0.99535 0.94923 0.99249 1.70088 1.30740 1.12916 1.43534 0.85443 0.78717 0.77941 0.78935 1.19730 1.20366 1.19047 1.20844 0.92998 0.98809 0.98166 1.20674 1.00954 0.96559 1.03017 1.23107 1.02131 0.93465 0.96970 0.91456 0.90798 0.90233 0.76027 0.90172 0.90753 0.93361 0.92442 0.75854 0.85122 0.87410 0.98505 0.98331 0.92648 0.87052 0.84168 0.90161 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.32 71.98 0.67 -0.56 16 2 C 0.10 1.22 1.94 -10.27 -0.02 1.20 16 3 O -0.57 -8.62 13.50 -148.98 -2.01 -10.63 16 4 C -0.16 -2.06 7.02 31.12 0.22 -1.84 16 5 C -0.11 -1.37 3.40 -10.27 -0.03 -1.41 16 6 H 0.11 1.13 7.66 -2.39 -0.02 1.11 16 7 C 0.14 2.56 4.75 86.38 0.41 2.97 16 8 N -0.74 -15.97 5.73 -339.39 -1.95 -17.92 16 9 C 0.20 6.00 6.65 38.21 0.25 6.26 16 10 C -0.20 -6.68 9.31 22.40 0.21 -6.48 16 11 C -0.09 -3.79 9.69 22.25 0.22 -3.57 16 12 C -0.12 -5.81 5.07 -19.84 -0.10 -5.91 16 13 C 0.06 3.57 5.10 29.10 0.15 3.72 16 14 C -0.53 -31.37 9.09 25.60 0.23 -31.14 16 15 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.00 0.05 5.46 84.65 0.46 0.52 16 17 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 18 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.09 -3.66 9.69 22.25 0.22 -3.44 16 23 C -0.19 -6.19 9.90 22.40 0.22 -5.97 16 24 C -0.12 -1.60 7.06 31.12 0.22 -1.38 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.51 7.34 -2.39 -0.02 0.49 16 28 H 0.39 2.77 9.04 -74.06 -0.67 2.10 16 29 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16 31 H 0.05 1.01 7.64 -2.38 -0.02 0.99 16 32 H 0.06 1.09 7.96 -2.39 -0.02 1.07 16 33 H 0.41 6.91 8.48 -92.72 -0.79 6.13 16 34 H 0.13 3.79 6.74 -2.91 -0.02 3.77 16 35 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 37 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 42 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -71.22 346.57 1.23 -69.98 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -0.45 Total: 15.60 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 3.32 Total: -47.04 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.66 Total: -75.63 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -2.01 Total: -10.63 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.22 1.23 -69.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168347139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.131 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds