Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.82543 * 2 1 4 4 C 1.54698 * 110.93717 * 236.25682 * 2 1 3 5 5 O 1.43805 * 102.76457 * 216.53823 * 4 2 1 6 6 C 1.36264 * 109.17782 * 27.96024 * 5 4 2 7 7 C 1.39272 * 129.80758 * 161.13330 * 6 5 4 8 8 C 1.37885 * 120.34114 * 179.03020 * 7 6 5 9 9 C 1.38874 * 120.27108 * 0.02562 * 8 7 6 10 10 N 1.39933 * 120.19642 * 180.16418 * 9 8 7 11 11 C 1.46503 * 119.99869 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47082 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47265 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99441 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00421 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47583 * 89.99883 * 18 16 14 20 20 H 1.48506 * 109.47156 * 210.00202 * 18 16 14 21 21 H 1.48499 * 109.46998 * 329.99711 * 18 16 14 22 22 C 1.38945 * 119.61434 * 0.18400 * 9 8 7 23 23 C 1.37722 * 119.91662 * 0.02562 * 22 9 8 24 24 H 1.09000 * 109.47670 * 296.30752 * 1 2 3 25 25 H 1.09007 * 109.46989 * 56.31207 * 1 2 3 26 26 H 1.09004 * 109.47128 * 176.30921 * 1 2 3 27 27 H 1.08999 * 109.47243 * 183.69494 * 3 2 1 28 28 H 1.09004 * 109.46734 * 303.68872 * 3 2 1 29 29 H 1.08994 * 109.47100 * 63.68941 * 3 2 1 30 30 H 1.08991 * 110.75067 * 334.90002 * 4 2 1 31 31 H 1.08999 * 110.74381 * 98.06801 * 4 2 1 32 32 H 1.08009 * 119.82747 * 359.04046 * 7 6 5 33 33 H 1.08001 * 119.86320 * 180.02562 * 8 7 6 34 34 H 0.97006 * 120.00735 * 180.02562 * 10 9 8 35 35 H 1.08995 * 109.47379 * 299.99721 * 11 10 9 36 36 H 1.09005 * 109.46841 * 60.00182 * 11 10 9 37 37 H 1.08996 * 109.47622 * 299.99891 * 12 11 10 38 38 H 1.08997 * 109.47143 * 60.00168 * 12 11 10 39 39 H 1.09000 * 109.47433 * 300.00466 * 13 12 11 40 40 H 1.09005 * 109.46709 * 60.00441 * 13 12 11 41 41 H 0.97008 * 119.99571 * 180.02562 * 17 16 14 42 42 H 1.07990 * 120.03981 * 179.71818 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0739 1.4301 0.0000 4 6 2.0828 -0.8026 -1.2014 5 8 3.2488 -1.4381 -0.6495 6 6 3.0685 -1.6194 0.6889 7 6 3.7259 -2.4753 1.5692 8 6 3.3953 -2.4858 2.9078 9 6 2.4027 -1.6428 3.3904 10 7 2.0708 -1.6523 4.7498 11 6 2.7716 -2.5529 5.6686 12 6 2.2226 -2.3653 7.0843 13 6 2.9540 -3.3063 8.0438 14 6 2.4137 -3.1212 9.4383 15 1 1.6270 -2.4043 9.6219 16 6 2.9236 -3.8668 10.4800 17 7 3.8820 -4.7394 10.2564 18 14 2.2535 -3.6378 12.2084 19 1 1.1170 -4.5685 12.4262 20 1 3.3243 -3.9244 13.1966 21 1 1.7863 -2.2383 12.3768 22 6 1.7408 -0.7902 2.5155 23 6 2.0713 -0.7862 1.1785 24 1 -0.3634 0.4554 0.9212 25 1 -0.3633 0.5701 -0.8552 26 1 -0.3633 -1.0256 -0.0662 27 1 3.1616 1.4051 -0.0662 28 1 1.6703 1.9723 -0.8551 29 1 1.7774 1.9316 0.9212 30 1 1.3587 -1.5456 -1.5354 31 1 2.3543 -0.1352 -2.0194 32 1 4.4988 -3.1340 1.2015 33 1 3.9104 -3.1523 3.5838 34 1 1.3768 -1.0626 5.0838 35 1 2.6186 -3.5849 5.3531 36 1 3.8373 -2.3242 5.6593 37 1 2.3758 -1.3333 7.3998 38 1 1.1568 -2.5937 7.0940 39 1 2.8004 -4.3383 7.7283 40 1 4.0198 -3.0783 8.0343 41 1 4.2405 -5.2643 10.9892 42 1 0.9647 -0.1351 2.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -27.295464 kcal Electronic energy + Delta-G solvation = -20416.580058 eV Core-core repulsion = 17360.922669 eV Total energy + Delta-G solvation = -3055.657389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28868 -38.25905 -35.47818 -35.16572 -33.37117 -31.43588 -30.19053 -28.38500 -27.63281 -26.70928 -25.90908 -23.54730 -22.79434 -21.25206 -20.35279 -19.60093 -17.15645 -16.75298 -16.64614 -16.15937 -15.85364 -14.79498 -14.62381 -14.36401 -14.31441 -14.20630 -13.66804 -13.32386 -13.07320 -12.95849 -12.59697 -12.48697 -12.16837 -11.98939 -11.88268 -11.66312 -11.61815 -11.15960 -11.01108 -10.83645 -10.72488 -10.58211 -10.45812 -9.88279 -9.49144 -9.24989 -9.15156 -8.80184 -8.39559 -6.94332 -6.04559 -4.07364 1.39465 1.67834 3.29250 3.33694 3.35708 3.38663 3.70804 3.86581 4.13998 4.42089 4.43430 4.67142 4.81880 4.97510 5.18703 5.23642 5.31497 5.32957 5.33782 5.41011 5.53795 5.55961 5.58691 5.66228 5.72354 5.73418 5.86869 5.98041 6.03013 6.11271 6.17336 6.42904 6.52682 6.58024 6.60174 6.69503 6.96422 7.22668 7.58272 7.60346 7.73017 7.94189 7.98519 8.36153 8.99188 9.57027 11.06795 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.002707 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.676585 B =10340.883585 C =10793.719895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C -0.133 4.133 4 C 0.060 3.940 5 O -0.309 6.309 6 C 0.031 3.969 7 C -0.085 4.085 8 C -0.166 4.166 9 C 0.203 3.797 10 N -0.744 5.744 11 C 0.122 3.878 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.152 4.152 23 C -0.113 4.113 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.397 0.603 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 9.528 -22.468 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.190 4.190 4 C -0.015 4.015 5 O -0.224 6.224 6 C -0.014 4.014 7 C -0.104 4.104 8 C -0.189 4.189 9 C 0.099 3.901 10 N -0.373 5.373 11 C -0.002 4.002 12 C -0.158 4.158 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.175 4.175 23 C -0.114 4.114 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.231 0.769 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.497 9.197 -22.389 24.618 hybrid contribution -0.711 0.313 1.207 1.436 sum -5.209 9.509 -21.182 23.795 Atomic orbital electron populations 1.21759 0.92725 1.02346 1.02346 1.20798 0.96651 0.95813 0.92224 1.21760 1.01415 0.93582 1.02225 1.23850 0.86635 0.95277 0.95781 1.86808 1.38575 1.78101 1.18899 1.19207 0.99536 0.98812 0.83876 1.19977 1.00917 0.97949 0.91567 1.20435 1.00724 1.02923 0.94848 1.17708 0.93572 0.94167 0.84676 1.44958 1.42973 1.45386 1.03953 1.21597 0.96045 0.92642 0.89885 1.21842 1.00313 1.01420 0.92216 1.19027 0.95531 0.93967 0.92791 1.21212 1.20152 1.21833 0.92874 0.92687 1.25026 0.95022 0.95218 0.99189 1.69966 1.26789 1.24464 1.32149 0.86579 0.78612 0.78482 0.84241 1.20639 1.21174 1.19892 1.19601 1.03651 1.02977 0.91227 1.20283 0.99285 0.97855 0.94017 0.91854 0.92133 0.92139 0.92061 0.92083 0.91913 0.91007 0.88218 0.85800 0.85012 0.76885 0.92599 0.92591 0.92808 0.92824 0.96351 0.96338 0.92921 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.55 37.16 0.32 -0.72 16 2 C -0.05 -0.51 1.03 -154.29 -0.16 -0.67 16 3 C -0.13 -1.10 8.61 37.16 0.32 -0.78 16 4 C 0.06 0.55 7.09 38.05 0.27 0.82 16 5 O -0.31 -3.99 11.11 -20.59 -0.23 -4.22 16 6 C 0.03 0.43 7.03 -38.96 -0.27 0.15 16 7 C -0.08 -1.14 10.05 -39.33 -0.40 -1.54 16 8 C -0.17 -2.34 9.30 -39.47 -0.37 -2.71 16 9 C 0.20 2.87 6.66 -83.66 -0.56 2.32 16 10 N -0.74 -10.70 5.74 -58.56 -0.34 -11.03 16 11 C 0.12 2.01 4.92 -4.04 -0.02 1.99 16 12 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.15 -1.93 9.78 -39.51 -0.39 -2.32 16 23 C -0.11 -1.40 5.04 -104.10 -0.52 -1.92 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 26 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 7.86 -51.93 -0.41 0.18 16 31 H 0.10 0.69 7.92 -51.93 -0.41 0.28 16 32 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.13 1.80 6.74 -52.49 -0.35 1.45 16 34 H 0.40 5.15 8.49 -40.82 -0.35 4.81 16 35 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 36 H 0.06 0.94 7.96 -51.93 -0.41 0.52 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -30.48 344.33 -9.08 -39.57 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.96 Total: 0.70 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -2.47 Total: -20.74 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.40 Total: -36.93 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.23 Total: -4.22 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.48 -9.08 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.273 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds