Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.82543 * 2 1 4 4 C 1.54698 * 110.93717 * 236.25682 * 2 1 3 5 5 O 1.43805 * 102.76457 * 216.53823 * 4 2 1 6 6 C 1.36264 * 109.17782 * 27.96024 * 5 4 2 7 7 C 1.39272 * 129.80758 * 161.13330 * 6 5 4 8 8 C 1.37885 * 120.34114 * 179.03020 * 7 6 5 9 9 C 1.38874 * 120.27108 * 0.02562 * 8 7 6 10 10 N 1.39933 * 120.19642 * 180.16418 * 9 8 7 11 11 C 1.46503 * 119.99869 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47082 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47265 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99441 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00421 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47583 * 89.99883 * 18 16 14 20 20 H 1.48506 * 109.47156 * 210.00202 * 18 16 14 21 21 H 1.48499 * 109.46998 * 329.99711 * 18 16 14 22 22 C 1.38945 * 119.61434 * 0.18400 * 9 8 7 23 23 C 1.37722 * 119.91662 * 0.02562 * 22 9 8 24 24 H 1.09000 * 109.47670 * 296.30752 * 1 2 3 25 25 H 1.09007 * 109.46989 * 56.31207 * 1 2 3 26 26 H 1.09004 * 109.47128 * 176.30921 * 1 2 3 27 27 H 1.08999 * 109.47243 * 183.69494 * 3 2 1 28 28 H 1.09004 * 109.46734 * 303.68872 * 3 2 1 29 29 H 1.08994 * 109.47100 * 63.68941 * 3 2 1 30 30 H 1.08991 * 110.75067 * 334.90002 * 4 2 1 31 31 H 1.08999 * 110.74381 * 98.06801 * 4 2 1 32 32 H 1.08009 * 119.82747 * 359.04046 * 7 6 5 33 33 H 1.08001 * 119.86320 * 180.02562 * 8 7 6 34 34 H 0.97006 * 120.00735 * 180.02562 * 10 9 8 35 35 H 1.08995 * 109.47379 * 299.99721 * 11 10 9 36 36 H 1.09005 * 109.46841 * 60.00182 * 11 10 9 37 37 H 1.08996 * 109.47622 * 299.99891 * 12 11 10 38 38 H 1.08997 * 109.47143 * 60.00168 * 12 11 10 39 39 H 1.09000 * 109.47433 * 300.00466 * 13 12 11 40 40 H 1.09005 * 109.46709 * 60.00441 * 13 12 11 41 41 H 0.97008 * 119.99571 * 180.02562 * 17 16 14 42 42 H 1.07990 * 120.03981 * 179.71818 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0739 1.4301 0.0000 4 6 2.0828 -0.8026 -1.2014 5 8 3.2488 -1.4381 -0.6495 6 6 3.0685 -1.6194 0.6889 7 6 3.7259 -2.4753 1.5692 8 6 3.3953 -2.4858 2.9078 9 6 2.4027 -1.6428 3.3904 10 7 2.0708 -1.6523 4.7498 11 6 2.7716 -2.5529 5.6686 12 6 2.2226 -2.3653 7.0843 13 6 2.9540 -3.3063 8.0438 14 6 2.4137 -3.1212 9.4383 15 1 1.6270 -2.4043 9.6219 16 6 2.9236 -3.8668 10.4800 17 7 3.8820 -4.7394 10.2564 18 14 2.2535 -3.6378 12.2084 19 1 1.1170 -4.5685 12.4262 20 1 3.3243 -3.9244 13.1966 21 1 1.7863 -2.2383 12.3768 22 6 1.7408 -0.7902 2.5155 23 6 2.0713 -0.7862 1.1785 24 1 -0.3634 0.4554 0.9212 25 1 -0.3633 0.5701 -0.8552 26 1 -0.3633 -1.0256 -0.0662 27 1 3.1616 1.4051 -0.0662 28 1 1.6703 1.9723 -0.8551 29 1 1.7774 1.9316 0.9212 30 1 1.3587 -1.5456 -1.5354 31 1 2.3543 -0.1352 -2.0194 32 1 4.4988 -3.1340 1.2015 33 1 3.9104 -3.1523 3.5838 34 1 1.3768 -1.0626 5.0838 35 1 2.6186 -3.5849 5.3531 36 1 3.8373 -2.3242 5.6593 37 1 2.3758 -1.3333 7.3998 38 1 1.1568 -2.5937 7.0940 39 1 2.8004 -4.3383 7.7283 40 1 4.0198 -3.0783 8.0343 41 1 4.2405 -5.2643 10.9892 42 1 0.9647 -0.1351 2.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -44.156396 kcal Electronic energy + Delta-G solvation = -20417.311203 eV Core-core repulsion = 17360.922669 eV Total energy + Delta-G solvation = -3056.388534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18805 -39.33526 -36.85286 -35.98626 -35.16855 -33.13049 -31.22021 -29.70641 -28.24700 -27.81725 -27.16407 -24.97042 -24.09214 -22.34128 -21.99882 -20.45797 -18.53474 -18.14078 -17.75869 -17.38895 -16.73969 -16.51312 -16.27810 -15.63378 -15.15331 -15.02360 -14.51101 -14.40564 -14.29971 -14.15283 -13.77731 -13.68784 -13.48292 -13.43218 -12.97056 -12.73923 -12.66597 -12.49898 -12.33870 -12.28128 -12.01047 -11.76460 -11.56779 -11.47705 -11.34904 -11.18565 -10.56100 -10.34530 -9.79090 -8.21027 -8.03347 -6.31976 0.38536 0.62874 1.40499 1.41484 1.52503 2.36926 2.43178 2.61629 2.85646 3.12769 3.36053 3.66423 3.96199 4.01405 4.11433 4.19585 4.25017 4.33416 4.43395 4.53835 4.60011 4.61072 4.71299 4.77655 4.85258 4.93950 4.96549 4.97869 4.98378 5.15198 5.17253 5.18923 5.29627 5.35627 5.39193 5.49735 5.54615 5.62734 5.71621 5.83576 6.17539 6.25205 6.46843 6.84618 6.91329 7.37470 8.90917 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.002707 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.676585 B =10340.883585 C =10793.719895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.130 4.130 4 C 0.053 3.947 5 O -0.327 6.327 6 C 0.019 3.981 7 C -0.097 4.097 8 C -0.180 4.180 9 C 0.188 3.812 10 N -0.741 5.741 11 C 0.138 3.862 12 C -0.103 4.103 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.263 1.263 22 C -0.150 4.150 23 C -0.116 4.116 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.405 0.595 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.059 0.941 39 H -0.005 1.005 40 H -0.005 1.005 41 H 0.264 0.736 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 11.187 -23.335 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 C -0.187 4.187 4 C -0.021 4.021 5 O -0.242 6.242 6 C -0.027 4.027 7 C -0.116 4.116 8 C -0.203 4.203 9 C 0.085 3.915 10 N -0.372 5.372 11 C 0.013 3.987 12 C -0.141 4.141 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.173 4.173 23 C -0.117 4.117 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.241 0.759 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.072 0.928 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.182 10.876 -23.286 26.434 hybrid contribution -0.170 -0.197 1.356 1.380 sum -6.352 10.679 -21.930 25.205 Atomic orbital electron populations 1.21754 0.91163 1.02487 1.03464 1.20910 0.97841 0.95948 0.90625 1.21759 1.00551 0.93064 1.03368 1.24170 0.85869 0.95847 0.96256 1.86781 1.40406 1.78503 1.18494 1.19445 0.99778 0.99001 0.84466 1.20133 1.01415 0.98483 0.91541 1.20499 1.01243 1.03377 0.95214 1.17847 0.94168 0.94947 0.84555 1.44686 1.43250 1.45391 1.03848 1.21218 0.95766 0.92973 0.88736 1.21556 0.99880 1.00069 0.92595 1.18925 0.94731 0.93998 0.93509 1.21688 1.20313 1.21876 0.94267 0.92031 1.25983 0.95250 0.94835 1.03844 1.70099 1.28178 1.25475 1.33593 0.85449 0.78009 0.78980 0.78627 1.19789 1.20843 1.18691 1.19782 1.03628 1.02615 0.91244 1.20688 0.98698 0.97685 0.94668 0.91811 0.89807 0.92677 0.93482 0.89519 0.92032 0.89996 0.85708 0.84897 0.85429 0.75941 0.93079 0.93138 0.92249 0.92204 0.98671 0.98693 0.92755 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.55 71.98 0.62 -1.02 16 2 C -0.05 -0.87 1.03 -52.04 -0.05 -0.93 16 3 C -0.13 -1.84 8.61 71.98 0.62 -1.22 16 4 C 0.05 0.86 7.09 72.56 0.51 1.38 16 5 O -0.33 -8.09 11.11 -96.57 -1.07 -9.16 16 6 C 0.02 0.50 7.03 22.67 0.16 0.66 16 7 C -0.10 -2.63 10.05 22.43 0.23 -2.40 16 8 C -0.18 -5.16 9.30 22.34 0.21 -4.95 16 9 C 0.19 5.25 6.66 38.17 0.25 5.50 16 10 N -0.74 -20.86 5.74 -339.19 -1.95 -22.81 16 11 C 0.14 4.58 4.92 86.38 0.43 5.00 16 12 C -0.10 -4.01 5.27 30.60 0.16 -3.85 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.54 -30.50 9.11 25.60 0.23 -30.26 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 17 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 18 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.15 -3.64 9.78 22.32 0.22 -3.43 16 23 C -0.12 -2.72 5.04 -19.53 -0.10 -2.82 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.05 0.75 8.07 -2.38 -0.02 0.73 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.15 7.86 -2.39 -0.02 1.13 16 31 H 0.13 1.36 7.92 -2.39 -0.02 1.34 16 32 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.13 3.64 6.74 -2.91 -0.02 3.62 16 34 H 0.40 9.99 8.49 -92.70 -0.79 9.21 16 35 H 0.05 1.74 7.95 -2.39 -0.02 1.73 16 36 H 0.05 1.73 7.96 -2.38 -0.02 1.71 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 41 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 42 H 0.14 2.74 8.06 -2.92 -0.02 2.72 16 Total: -1.00 -65.73 344.33 3.59 -62.14 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.20 Total: 16.68 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 4.09 Total: -36.46 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.66 Total: -79.11 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.07 Total: -9.16 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.73 3.59 -62.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.984 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds