Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 113.12644 * 2 1 4 4 C 1.54037 * 113.86720 * 132.06740 * 2 1 3 5 5 C 1.54038 * 85.95734 * 136.78549 * 4 2 1 6 6 H 1.09001 * 113.86360 * 91.64003 * 5 4 2 7 7 C 1.52999 * 113.86464 * 223.21313 * 5 4 2 8 8 N 1.46497 * 109.47167 * 185.00093 * 7 5 4 9 9 C 1.39678 * 119.99944 * 179.97438 * 8 7 5 10 10 C 1.38912 * 120.07480 * 359.72226 * 9 8 7 11 11 C 1.38107 * 119.92082 * 179.76761 * 10 9 8 12 12 C 1.38281 * 120.07368 * 0.50939 * 11 10 9 13 13 C 1.50706 * 119.92298 * 179.72094 * 12 11 10 14 14 C 1.50695 * 109.47055 * 270.02586 * 13 12 11 15 15 H 1.08004 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99993 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00299 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47667 * 89.99319 * 18 16 14 20 20 H 1.48500 * 109.47465 * 209.99726 * 18 16 14 21 21 H 1.48505 * 109.46997 * 329.99775 * 18 16 14 22 22 C 1.38286 * 120.15529 * 359.74443 * 12 11 10 23 23 C 1.38107 * 120.06958 * 359.97438 * 22 12 11 24 24 O 1.44177 * 85.51683 * 337.36225 * 5 4 2 25 25 H 1.09000 * 109.47026 * 287.92943 * 1 2 3 26 26 H 1.08998 * 109.47426 * 47.93925 * 1 2 3 27 27 H 1.09011 * 109.46988 * 167.93315 * 1 2 3 28 28 H 1.09000 * 109.47424 * 192.06540 * 3 2 1 29 29 H 1.08999 * 109.46999 * 312.06740 * 3 2 1 30 30 H 1.08996 * 109.46798 * 72.06287 * 3 2 1 31 31 H 1.09002 * 113.81662 * 22.49821 * 4 2 1 32 32 H 1.08996 * 113.81641 * 251.07038 * 4 2 1 33 33 H 1.09006 * 109.46913 * 305.00226 * 7 5 4 34 34 H 1.08998 * 109.47048 * 65.00197 * 7 5 4 35 35 H 0.97000 * 120.00124 * 359.97438 * 8 7 5 36 36 H 1.07999 * 120.03653 * 0.02562 * 10 9 8 37 37 H 1.07996 * 119.95803 * 180.25048 * 11 10 9 38 38 H 1.09004 * 109.46768 * 30.02213 * 13 12 11 39 39 H 1.08995 * 109.47293 * 150.02141 * 13 12 11 40 40 H 0.96997 * 120.00295 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.96335 * 179.97438 * 22 12 11 42 42 H 1.07995 * 120.03257 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1309 1.4071 0.0000 4 6 2.1532 -0.9438 1.0457 5 6 3.1333 -1.3547 -0.0693 6 1 4.0507 -0.7664 -0.0889 7 6 3.3868 -2.8616 -0.1463 8 7 4.4163 -3.1329 -1.1526 9 6 4.8194 -4.4466 -1.4028 10 6 4.2493 -5.4966 -0.6941 11 6 4.6469 -6.7947 -0.9474 12 6 5.6187 -7.0489 -1.8977 13 6 6.0545 -8.4663 -2.1669 14 6 7.2050 -8.8190 -1.2597 15 1 7.5831 -8.0896 -0.5586 16 6 7.7755 -10.0724 -1.3254 17 7 7.3154 -10.9604 -2.1795 18 14 9.2021 -10.5095 -0.2015 19 1 8.6779 -11.0865 1.0624 20 1 10.0760 -11.5037 -0.8745 21 1 9.9866 -9.2855 0.1013 22 6 6.1921 -6.0056 -2.6012 23 6 5.7951 -4.7055 -2.3570 24 8 2.1174 -0.8868 -0.9791 25 1 -0.3633 0.3164 0.9778 26 1 -0.3634 0.6884 -0.7629 27 1 -0.3633 -1.0051 -0.2149 28 1 3.1978 1.3466 -0.2148 29 1 1.6404 2.0116 -0.7629 30 1 1.9825 1.8654 0.9777 31 1 1.4888 -1.7465 1.3656 32 1 2.6271 -0.4256 1.8793 33 1 3.7239 -3.2234 0.8251 34 1 2.4642 -3.3715 -0.4237 35 1 4.8180 -2.4001 -1.6452 36 1 3.4932 -5.2983 0.0511 37 1 4.2012 -7.6118 -0.3997 38 1 5.2220 -9.1443 -1.9783 39 1 6.3698 -8.5583 -3.2061 40 1 7.7165 -11.8424 -2.2255 41 1 6.9512 -6.2076 -3.3424 42 1 6.2435 -3.8912 -2.9065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168455978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = -2.837219 kcal Electronic energy + Delta-G solvation = -20188.064195 eV Core-core repulsion = 17133.467395 eV Total energy + Delta-G solvation = -3054.596800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07776 -38.77954 -35.62297 -33.12887 -32.57016 -31.01289 -30.13177 -29.43291 -27.97309 -26.94623 -25.29308 -22.73399 -22.61805 -21.14916 -19.97083 -19.58734 -16.99203 -16.76996 -16.39584 -16.20628 -15.68870 -14.90515 -14.66516 -14.31129 -14.06647 -13.76762 -13.44602 -13.22194 -12.95209 -12.73693 -12.69013 -12.44159 -12.39033 -12.24483 -11.90383 -11.77694 -11.28380 -11.16806 -10.98191 -10.72681 -10.61461 -10.48787 -10.06749 -9.96446 -9.74010 -9.37353 -8.97502 -8.34400 -8.17984 -6.71897 -5.94314 -3.98733 2.17903 2.42285 3.14486 3.34847 3.40802 3.45431 3.58667 3.95446 4.38411 4.45464 4.47121 4.60820 4.72410 4.73671 4.94957 5.05834 5.13265 5.21414 5.30413 5.38099 5.42127 5.47766 5.55577 5.58950 5.61424 5.67084 5.84333 5.93861 6.10542 6.12786 6.18832 6.38000 6.49083 6.76948 6.90841 7.35401 7.35787 7.47893 7.65737 7.89246 8.01183 8.02871 8.09935 8.44917 9.07181 9.64459 11.14006 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043098 B = 0.002685 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.523284 B =10425.582109 C =10504.263081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 C -0.152 4.152 4 C -0.170 4.170 5 C 0.053 3.947 6 H 0.095 0.905 7 C 0.135 3.865 8 N -0.756 5.756 9 C 0.181 3.819 10 C -0.195 4.195 11 C -0.081 4.081 12 C -0.084 4.084 13 C 0.053 3.947 14 C -0.507 4.507 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.080 4.080 23 C -0.192 4.192 24 O -0.366 6.366 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 23.446 5.963 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 C -0.210 4.210 4 C -0.208 4.208 5 C -0.005 4.005 6 H 0.112 0.888 7 C 0.010 3.990 8 N -0.390 5.390 9 C 0.082 3.918 10 C -0.218 4.218 11 C -0.099 4.099 12 C -0.086 4.086 13 C 0.016 3.984 14 C -0.545 4.545 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.098 4.098 23 C -0.215 4.215 24 O -0.286 6.286 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.134 0.866 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.867 23.183 5.776 26.676 hybrid contribution 1.047 0.000 0.584 1.199 sum -10.821 23.183 6.361 26.363 Atomic orbital electron populations 1.21788 0.92317 1.03317 1.02523 1.22782 0.94876 0.91038 0.87328 1.21952 1.01507 0.94747 1.02775 1.24809 0.98078 0.99638 0.98305 1.23601 0.92858 0.95507 0.88506 0.88773 1.21286 0.92291 0.92546 0.92840 1.44328 1.44858 1.05009 1.44794 1.17599 0.94819 0.84027 0.95370 1.20499 1.04826 0.92408 1.04026 1.20838 0.96821 0.95186 0.97090 1.20456 0.94844 0.98110 0.95189 1.18247 0.96350 0.86453 0.97350 1.21138 1.15497 0.97936 1.19976 0.92573 1.25025 0.97280 0.96481 0.95726 1.69962 1.41949 1.05518 1.36147 0.86571 0.82391 0.78203 0.80732 1.20684 1.21249 1.19869 1.20830 0.98502 0.91374 0.99132 1.20461 1.01738 0.97130 1.02146 1.89929 1.45028 1.57995 1.35607 0.90909 0.91809 0.91320 0.91759 0.91481 0.90996 0.88347 0.90594 0.91195 0.91667 0.77207 0.87450 0.86643 0.95698 0.95680 0.92982 0.86576 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.49 37.15 0.35 -0.59 16 2 C 0.08 0.62 1.83 -90.14 -0.17 0.46 16 3 C -0.15 -0.95 9.38 37.16 0.35 -0.60 16 4 C -0.17 -1.22 7.10 -25.65 -0.18 -1.41 16 5 C 0.05 0.49 4.18 -26.25 -0.11 0.38 16 6 H 0.09 0.78 7.84 -51.93 -0.41 0.37 16 7 C 0.14 1.51 4.99 -4.04 -0.02 1.49 16 8 N -0.76 -10.13 5.73 -58.63 -0.34 -10.46 16 9 C 0.18 3.06 6.65 -83.78 -0.56 2.51 16 10 C -0.20 -3.47 9.31 -39.38 -0.37 -3.84 16 11 C -0.08 -1.66 9.69 -39.61 -0.38 -2.04 16 12 C -0.08 -1.92 5.07 -104.59 -0.53 -2.45 16 13 C 0.05 1.41 5.10 -29.03 -0.15 1.26 16 14 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.08 -1.64 9.69 -39.61 -0.38 -2.02 16 23 C -0.19 -3.42 9.90 -39.38 -0.39 -3.81 16 24 O -0.37 -4.10 11.99 -35.23 -0.42 -4.52 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.42 7.58 -51.93 -0.39 0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.67 8.05 -51.93 -0.42 0.26 16 32 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 35 H 0.39 4.71 8.49 -40.82 -0.35 4.37 16 36 H 0.11 1.65 6.73 -52.49 -0.35 1.29 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.02 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -31.96 348.59 -9.66 -41.63 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.93 Total: 1.53 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.95 Total: -24.05 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.40 Total: -36.79 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.42 Total: -4.52 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.96 -9.66 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168455978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.791 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds