Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 113.12644 * 2 1 4 4 C 1.54037 * 113.86720 * 132.06740 * 2 1 3 5 5 C 1.54038 * 85.95734 * 136.78549 * 4 2 1 6 6 H 1.09001 * 113.86360 * 91.64003 * 5 4 2 7 7 C 1.52999 * 113.86464 * 223.21313 * 5 4 2 8 8 N 1.46497 * 109.47167 * 185.00093 * 7 5 4 9 9 C 1.39678 * 119.99944 * 179.97438 * 8 7 5 10 10 C 1.38912 * 120.07480 * 359.72226 * 9 8 7 11 11 C 1.38107 * 119.92082 * 179.76761 * 10 9 8 12 12 C 1.38281 * 120.07368 * 0.50939 * 11 10 9 13 13 C 1.50706 * 119.92298 * 179.72094 * 12 11 10 14 14 C 1.50695 * 109.47055 * 270.02586 * 13 12 11 15 15 H 1.08004 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99993 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00299 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47667 * 89.99319 * 18 16 14 20 20 H 1.48500 * 109.47465 * 209.99726 * 18 16 14 21 21 H 1.48505 * 109.46997 * 329.99775 * 18 16 14 22 22 C 1.38286 * 120.15529 * 359.74443 * 12 11 10 23 23 C 1.38107 * 120.06958 * 359.97438 * 22 12 11 24 24 O 1.44177 * 85.51683 * 337.36225 * 5 4 2 25 25 H 1.09000 * 109.47026 * 287.92943 * 1 2 3 26 26 H 1.08998 * 109.47426 * 47.93925 * 1 2 3 27 27 H 1.09011 * 109.46988 * 167.93315 * 1 2 3 28 28 H 1.09000 * 109.47424 * 192.06540 * 3 2 1 29 29 H 1.08999 * 109.46999 * 312.06740 * 3 2 1 30 30 H 1.08996 * 109.46798 * 72.06287 * 3 2 1 31 31 H 1.09002 * 113.81662 * 22.49821 * 4 2 1 32 32 H 1.08996 * 113.81641 * 251.07038 * 4 2 1 33 33 H 1.09006 * 109.46913 * 305.00226 * 7 5 4 34 34 H 1.08998 * 109.47048 * 65.00197 * 7 5 4 35 35 H 0.97000 * 120.00124 * 359.97438 * 8 7 5 36 36 H 1.07999 * 120.03653 * 0.02562 * 10 9 8 37 37 H 1.07996 * 119.95803 * 180.25048 * 11 10 9 38 38 H 1.09004 * 109.46768 * 30.02213 * 13 12 11 39 39 H 1.08995 * 109.47293 * 150.02141 * 13 12 11 40 40 H 0.96997 * 120.00295 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.96335 * 179.97438 * 22 12 11 42 42 H 1.07995 * 120.03257 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1309 1.4071 0.0000 4 6 2.1532 -0.9438 1.0457 5 6 3.1333 -1.3547 -0.0693 6 1 4.0507 -0.7664 -0.0889 7 6 3.3868 -2.8616 -0.1463 8 7 4.4163 -3.1329 -1.1526 9 6 4.8194 -4.4466 -1.4028 10 6 4.2493 -5.4966 -0.6941 11 6 4.6469 -6.7947 -0.9474 12 6 5.6187 -7.0489 -1.8977 13 6 6.0545 -8.4663 -2.1669 14 6 7.2050 -8.8190 -1.2597 15 1 7.5831 -8.0896 -0.5586 16 6 7.7755 -10.0724 -1.3254 17 7 7.3154 -10.9604 -2.1795 18 14 9.2021 -10.5095 -0.2015 19 1 8.6779 -11.0865 1.0624 20 1 10.0760 -11.5037 -0.8745 21 1 9.9866 -9.2855 0.1013 22 6 6.1921 -6.0056 -2.6012 23 6 5.7951 -4.7055 -2.3570 24 8 2.1174 -0.8868 -0.9791 25 1 -0.3633 0.3164 0.9778 26 1 -0.3634 0.6884 -0.7629 27 1 -0.3633 -1.0051 -0.2149 28 1 3.1978 1.3466 -0.2148 29 1 1.6404 2.0116 -0.7629 30 1 1.9825 1.8654 0.9777 31 1 1.4888 -1.7465 1.3656 32 1 2.6271 -0.4256 1.8793 33 1 3.7239 -3.2234 0.8251 34 1 2.4642 -3.3715 -0.4237 35 1 4.8180 -2.4001 -1.6452 36 1 3.4932 -5.2983 0.0511 37 1 4.2012 -7.6118 -0.3997 38 1 5.2220 -9.1443 -1.9783 39 1 6.3698 -8.5583 -3.2061 40 1 7.7165 -11.8424 -2.2255 41 1 6.9512 -6.2076 -3.3424 42 1 6.2435 -3.8912 -2.9065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168455978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = -21.733204 kcal Electronic energy + Delta-G solvation = -20188.883586 eV Core-core repulsion = 17133.467395 eV Total energy + Delta-G solvation = -3055.416191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73557 -40.23184 -36.95225 -35.05816 -33.35309 -32.39353 -31.64732 -30.62318 -28.48225 -28.29527 -26.64400 -24.59152 -23.79484 -22.25078 -21.51807 -20.18198 -18.48340 -18.16926 -17.49186 -17.28771 -16.76118 -16.43944 -15.89623 -15.59468 -15.08546 -14.84666 -14.61256 -14.41898 -14.33320 -14.12715 -13.75757 -13.42982 -13.22702 -13.18896 -13.12897 -12.91528 -12.71934 -12.54644 -12.47550 -12.39861 -11.72136 -11.63760 -11.60474 -11.35191 -11.28485 -10.65512 -10.58097 -10.56888 -9.69275 -8.30687 -7.96962 -6.29708 0.66382 0.87791 1.40038 1.41576 1.53203 2.41406 2.41999 2.67325 3.13126 3.15145 3.31278 3.74787 3.89799 3.99928 4.08386 4.15345 4.23154 4.34467 4.39957 4.50403 4.64870 4.71126 4.72525 4.73018 4.77609 4.84952 4.91700 5.00428 5.01490 5.09768 5.19067 5.33396 5.36446 5.39840 5.40510 5.51000 5.54797 5.69754 5.80911 6.01979 6.22697 6.25025 6.55201 6.83592 6.91118 7.38494 8.92669 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043098 B = 0.002685 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.523284 B =10425.582109 C =10504.263081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.151 4.151 4 C -0.161 4.161 5 C 0.053 3.947 6 H 0.106 0.894 7 C 0.131 3.869 8 N -0.745 5.745 9 C 0.196 3.804 10 C -0.194 4.194 11 C -0.089 4.089 12 C -0.123 4.123 13 C 0.063 3.937 14 C -0.525 4.525 15 H 0.053 0.947 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.089 4.089 23 C -0.191 4.191 24 O -0.400 6.400 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.404 0.596 36 H 0.135 0.865 37 H 0.111 0.889 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 26.133 7.902 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.198 4.198 5 C -0.005 4.005 6 H 0.124 0.876 7 C 0.007 3.993 8 N -0.377 5.377 9 C 0.093 3.907 10 C -0.216 4.216 11 C -0.108 4.108 12 C -0.124 4.124 13 C 0.026 3.974 14 C -0.563 4.563 15 H 0.071 0.929 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.108 4.108 23 C -0.213 4.213 24 O -0.321 6.321 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.848 25.920 7.723 29.528 hybrid contribution 0.924 -0.699 -0.043 1.160 sum -10.924 25.221 7.680 28.538 Atomic orbital electron populations 1.21823 0.91762 1.02680 1.03735 1.23060 0.95479 0.91544 0.86626 1.21967 1.01108 0.93831 1.03921 1.24747 0.97330 0.99561 0.98206 1.23633 0.93481 0.94053 0.89322 0.87624 1.21460 0.91107 0.94236 0.92494 1.44438 1.44671 1.03773 1.44836 1.17701 0.93544 0.85416 0.94001 1.20674 1.05150 0.91287 1.04527 1.20839 0.96567 0.96606 0.96774 1.20153 0.97719 0.96324 0.98250 1.17986 0.94959 0.89056 0.95392 1.21444 1.16291 0.98265 1.20283 0.92886 1.25974 1.00201 0.96269 0.97286 1.70093 1.43481 1.06006 1.37742 0.85429 0.78697 0.78151 0.78674 1.19627 1.20460 1.19029 1.20837 0.98648 0.92265 0.99051 1.20666 1.01738 0.96564 1.02356 1.89906 1.45848 1.59021 1.37281 0.88888 0.91803 0.92517 0.92074 0.91596 0.89046 0.88111 0.88595 0.90002 0.92532 0.76077 0.84732 0.87093 0.98420 0.98422 0.92660 0.87053 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.49 71.98 0.68 -0.92 16 2 C 0.07 0.95 1.83 -10.48 -0.02 0.93 16 3 C -0.15 -1.47 9.38 71.98 0.68 -0.80 16 4 C -0.16 -1.81 7.10 31.30 0.22 -1.59 16 5 C 0.05 0.83 4.18 30.91 0.13 0.96 16 6 H 0.11 1.41 7.84 -2.39 -0.02 1.39 16 7 C 0.13 2.55 4.99 86.38 0.43 2.98 16 8 N -0.75 -17.75 5.73 -339.42 -1.95 -19.70 16 9 C 0.20 6.19 6.65 38.21 0.25 6.44 16 10 C -0.19 -6.61 9.31 22.40 0.21 -6.41 16 11 C -0.09 -3.71 9.69 22.25 0.22 -3.50 16 12 C -0.12 -5.79 5.07 -19.84 -0.10 -5.89 16 13 C 0.06 3.57 5.10 29.10 0.15 3.72 16 14 C -0.52 -31.26 9.09 25.60 0.23 -31.03 16 15 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 18 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.09 -3.72 9.69 22.25 0.22 -3.51 16 23 C -0.19 -6.49 9.90 22.40 0.22 -6.27 16 24 O -0.40 -8.19 11.99 -148.98 -1.79 -9.97 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.64 7.58 -2.39 -0.02 0.62 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 1.09 8.05 -2.39 -0.02 1.07 16 32 H 0.10 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.08 1.45 7.94 -2.38 -0.02 1.43 16 34 H 0.06 1.24 7.96 -2.39 -0.02 1.22 16 35 H 0.40 8.34 8.49 -92.71 -0.79 7.55 16 36 H 0.13 3.79 6.73 -2.91 -0.02 3.77 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.00 -0.15 8.08 -2.38 -0.02 -0.17 16 39 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -70.81 348.59 2.76 -68.05 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.20 Total: 16.22 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.98 Total: -44.40 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -1.66 Total: -77.45 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.79 Total: -9.97 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.81 2.76 -68.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168455978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.317 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds