Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 113.03919 * 2 1 4 4 C 1.54039 * 113.86116 * 131.98235 * 2 1 3 5 5 C 1.54028 * 85.82436 * 91.56788 * 4 2 1 6 6 H 1.08996 * 113.86579 * 268.29847 * 5 4 2 7 7 C 1.53001 * 113.86513 * 136.72436 * 5 4 2 8 8 N 1.46501 * 109.47032 * 182.31112 * 7 5 4 9 9 C 1.39674 * 120.00025 * 180.02562 * 8 7 5 10 10 C 1.38915 * 120.07498 * 179.97438 * 9 8 7 11 11 C 1.38103 * 119.92077 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07804 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.92433 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46817 * 90.00149 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00390 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46946 * 59.99892 * 18 16 14 20 20 H 1.48496 * 109.46933 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46921 * 299.99575 * 18 16 14 22 22 C 1.38280 * 120.14970 * 0.27061 * 12 11 10 23 23 C 1.38106 * 120.07502 * 359.45191 * 22 12 11 24 24 O 1.44176 * 85.66414 * 22.51083 * 5 4 2 25 25 H 1.08993 * 109.47337 * 288.02132 * 1 2 3 26 26 H 1.09006 * 109.46938 * 48.01838 * 1 2 3 27 27 H 1.09005 * 109.47276 * 168.01936 * 1 2 3 28 28 H 1.08995 * 109.47497 * 191.97273 * 3 2 1 29 29 H 1.08997 * 109.47303 * 311.97878 * 3 2 1 30 30 H 1.09005 * 109.46898 * 71.97363 * 3 2 1 31 31 H 1.08995 * 113.81835 * 337.33681 * 4 2 1 32 32 H 1.09000 * 113.92070 * 205.80607 * 4 2 1 33 33 H 1.09000 * 109.47331 * 62.31257 * 7 5 4 34 34 H 1.08995 * 109.47303 * 302.30885 * 7 5 4 35 35 H 0.96994 * 120.00303 * 0.02562 * 8 7 5 36 36 H 1.07994 * 120.03877 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.96056 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47318 * 209.99528 * 13 12 11 39 39 H 1.09000 * 109.47161 * 330.00159 * 13 12 11 40 40 H 0.96992 * 120.00038 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.96515 * 179.70315 * 22 12 11 42 42 H 1.08004 * 120.03903 * 180.27634 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1287 1.4079 0.0000 4 6 2.1531 -0.9423 1.0472 5 6 2.1462 -2.0038 -0.0689 6 1 1.2454 -2.6171 -0.0886 7 6 3.4331 -2.8276 -0.1477 8 7 3.3451 -3.7647 -1.2703 9 6 4.4077 -4.6290 -1.5436 10 6 4.3257 -5.5185 -2.6074 11 6 5.3780 -6.3721 -2.8743 12 6 6.5122 -6.3423 -2.0838 13 6 7.6584 -7.2756 -2.3779 14 6 8.6139 -6.6116 -3.3355 15 1 8.4112 -5.6137 -3.6955 16 6 9.7462 -7.2783 -3.7529 17 7 9.9927 -8.4937 -3.3150 18 14 10.9310 -6.4548 -4.9394 19 1 11.4543 -5.2061 -4.3295 20 1 12.0603 -7.3746 -5.2293 21 1 10.2206 -6.1292 -6.2021 22 6 6.5947 -5.4623 -1.0204 23 6 5.5484 -4.6020 -0.7512 24 8 2.1116 -0.8872 -0.9803 25 1 -0.3633 0.3179 0.9772 26 1 -0.3633 0.6874 -0.7640 27 1 -0.3634 -1.0053 -0.2133 28 1 3.1960 1.3489 -0.2132 29 1 1.6384 2.0113 -0.7639 30 1 1.9783 1.8667 0.9773 31 1 1.4897 -1.1749 1.8801 32 1 3.1522 -0.6475 1.3680 33 1 3.5659 -3.3838 0.7803 34 1 4.2826 -2.1611 -0.2966 35 1 2.5489 -3.7849 -1.8239 36 1 3.4400 -5.5426 -3.2249 37 1 5.3148 -7.0642 -3.7010 38 1 8.1800 -7.5139 -1.4509 39 1 7.2746 -8.1927 -2.8249 40 1 10.7891 -8.9628 -3.6089 41 1 7.4800 -5.4448 -0.4020 42 1 5.6152 -3.9118 0.0768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168455979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -3.014718 kcal Electronic energy + Delta-G solvation = -20223.348194 eV Core-core repulsion = 17168.743698 eV Total energy + Delta-G solvation = -3054.604497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08563 -38.77355 -35.61125 -33.12139 -32.55614 -31.01432 -30.12696 -29.44450 -27.96077 -26.94197 -25.28530 -22.72175 -22.61184 -21.14470 -19.95614 -19.59322 -16.95247 -16.80738 -16.39531 -16.19586 -15.68721 -14.90042 -14.65401 -14.34592 -14.06253 -13.70819 -13.45417 -13.21804 -12.95257 -12.72895 -12.67358 -12.43019 -12.38073 -12.24111 -11.89737 -11.79132 -11.24212 -11.16176 -10.99655 -10.72309 -10.59538 -10.49431 -10.06241 -9.95765 -9.74073 -9.36651 -8.97517 -8.33265 -8.17657 -6.71222 -5.93530 -3.97940 2.18209 2.42693 3.13775 3.37766 3.41180 3.45207 3.60531 3.96673 4.38852 4.46257 4.48099 4.61027 4.72717 4.74411 4.96164 5.04598 5.14052 5.21063 5.31479 5.38835 5.42882 5.47517 5.56067 5.59669 5.61917 5.67513 5.85352 5.95485 6.10689 6.12991 6.19166 6.38355 6.49548 6.77288 6.91317 7.35732 7.36105 7.48500 7.65933 7.89981 8.01922 8.03181 8.10781 8.45705 9.07780 9.65283 11.14767 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.002836 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.266657 B = 9869.434993 C =10227.877728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.079 3.921 3 C -0.143 4.143 4 C -0.170 4.170 5 C 0.052 3.948 6 H 0.094 0.906 7 C 0.136 3.864 8 N -0.756 5.756 9 C 0.181 3.819 10 C -0.193 4.193 11 C -0.080 4.080 12 C -0.085 4.085 13 C 0.053 3.947 14 C -0.508 4.508 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.081 4.081 23 C -0.196 4.196 24 O -0.364 6.364 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.282 15.975 9.944 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 C -0.200 4.200 4 C -0.208 4.208 5 C -0.006 4.006 6 H 0.112 0.888 7 C 0.011 3.989 8 N -0.389 5.389 9 C 0.082 3.918 10 C -0.215 4.215 11 C -0.098 4.098 12 C -0.086 4.086 13 C 0.017 3.983 14 C -0.546 4.546 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.099 4.099 23 C -0.218 4.218 24 O -0.284 6.284 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.003 15.971 9.825 26.696 hybrid contribution 0.368 0.408 -0.781 0.955 sum -18.634 16.379 9.043 26.406 Atomic orbital electron populations 1.21959 0.93218 1.03056 1.02762 1.22758 0.93641 0.92324 0.87281 1.21792 1.01850 0.93839 1.02510 1.24788 1.02953 0.94790 0.98253 1.23607 0.98497 0.89882 0.88577 0.88803 1.21292 0.95984 0.90968 0.90682 1.44293 1.18765 1.41093 1.34732 1.17603 0.88186 0.91116 0.94885 1.20463 1.00505 1.00670 0.99843 1.20829 0.92570 0.97859 0.98576 1.20454 0.96082 0.98163 0.93916 1.18241 0.89989 0.93012 0.97097 1.21107 1.05809 1.01371 1.26349 0.92617 1.25020 0.97919 0.94929 0.96594 1.69953 1.27222 1.11804 1.44645 0.86629 0.80468 0.79226 0.81542 1.20239 1.21322 1.20229 1.20838 0.97036 0.94738 0.97332 1.20496 0.94617 1.04190 1.02486 1.89922 1.81519 1.21672 1.35278 0.91021 0.91478 0.91775 0.91307 0.91805 0.90920 0.90576 0.88333 0.91251 0.91787 0.77162 0.87427 0.86583 0.95705 0.95696 0.92933 0.86654 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.37 37.16 0.35 -0.61 16 2 C 0.08 0.63 1.82 -90.17 -0.16 0.47 16 3 C -0.14 -0.98 9.49 37.16 0.35 -0.63 16 4 C -0.17 -1.22 7.11 -25.65 -0.18 -1.40 16 5 C 0.05 0.48 4.16 -26.28 -0.11 0.37 16 6 H 0.09 0.76 7.84 -51.93 -0.41 0.36 16 7 C 0.14 1.51 4.99 -4.04 -0.02 1.49 16 8 N -0.76 -10.19 5.73 -58.63 -0.34 -10.53 16 9 C 0.18 3.08 6.65 -83.78 -0.56 2.52 16 10 C -0.19 -3.44 9.90 -39.38 -0.39 -3.83 16 11 C -0.08 -1.64 9.69 -39.61 -0.38 -2.02 16 12 C -0.08 -1.93 5.07 -104.59 -0.53 -2.46 16 13 C 0.05 1.43 5.10 -29.03 -0.15 1.28 16 14 C -0.51 -14.71 9.09 -34.44 -0.31 -15.02 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.08 -1.66 9.69 -39.61 -0.38 -2.04 16 23 C -0.20 -3.48 9.31 -39.38 -0.37 -3.85 16 24 O -0.36 -4.15 11.99 -35.23 -0.42 -4.57 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 7.58 -51.93 -0.39 0.02 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.06 0.79 7.95 -51.93 -0.41 0.37 16 35 H 0.39 4.81 8.49 -40.82 -0.35 4.47 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 38 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 42 H 0.11 1.64 6.73 -52.48 -0.35 1.29 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -32.08 348.57 -9.66 -41.74 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.93 Total: 1.57 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -2.95 Total: -24.18 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.40 Total: -36.92 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.42 Total: -4.57 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.08 -9.66 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168455979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.730 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds