Wall clock time and date at job start Mon Mar 30 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 113.03919 * 2 1 4 4 C 1.54039 * 113.86116 * 131.98235 * 2 1 3 5 5 C 1.54028 * 85.82436 * 91.56788 * 4 2 1 6 6 H 1.08996 * 113.86579 * 268.29847 * 5 4 2 7 7 C 1.53001 * 113.86513 * 136.72436 * 5 4 2 8 8 N 1.46501 * 109.47032 * 182.31112 * 7 5 4 9 9 C 1.39674 * 120.00025 * 180.02562 * 8 7 5 10 10 C 1.38915 * 120.07498 * 179.97438 * 9 8 7 11 11 C 1.38103 * 119.92077 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07804 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.92433 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46817 * 90.00149 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00390 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46946 * 59.99892 * 18 16 14 20 20 H 1.48496 * 109.46933 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46921 * 299.99575 * 18 16 14 22 22 C 1.38280 * 120.14970 * 0.27061 * 12 11 10 23 23 C 1.38106 * 120.07502 * 359.45191 * 22 12 11 24 24 O 1.44176 * 85.66414 * 22.51083 * 5 4 2 25 25 H 1.08993 * 109.47337 * 288.02132 * 1 2 3 26 26 H 1.09006 * 109.46938 * 48.01838 * 1 2 3 27 27 H 1.09005 * 109.47276 * 168.01936 * 1 2 3 28 28 H 1.08995 * 109.47497 * 191.97273 * 3 2 1 29 29 H 1.08997 * 109.47303 * 311.97878 * 3 2 1 30 30 H 1.09005 * 109.46898 * 71.97363 * 3 2 1 31 31 H 1.08995 * 113.81835 * 337.33681 * 4 2 1 32 32 H 1.09000 * 113.92070 * 205.80607 * 4 2 1 33 33 H 1.09000 * 109.47331 * 62.31257 * 7 5 4 34 34 H 1.08995 * 109.47303 * 302.30885 * 7 5 4 35 35 H 0.96994 * 120.00303 * 0.02562 * 8 7 5 36 36 H 1.07994 * 120.03877 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.96056 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47318 * 209.99528 * 13 12 11 39 39 H 1.09000 * 109.47161 * 330.00159 * 13 12 11 40 40 H 0.96992 * 120.00038 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.96515 * 179.70315 * 22 12 11 42 42 H 1.08004 * 120.03903 * 180.27634 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1287 1.4079 0.0000 4 6 2.1531 -0.9423 1.0472 5 6 2.1462 -2.0038 -0.0689 6 1 1.2454 -2.6171 -0.0886 7 6 3.4331 -2.8276 -0.1477 8 7 3.3451 -3.7647 -1.2703 9 6 4.4077 -4.6290 -1.5436 10 6 4.3257 -5.5185 -2.6074 11 6 5.3780 -6.3721 -2.8743 12 6 6.5122 -6.3423 -2.0838 13 6 7.6584 -7.2756 -2.3779 14 6 8.6139 -6.6116 -3.3355 15 1 8.4112 -5.6137 -3.6955 16 6 9.7462 -7.2783 -3.7529 17 7 9.9927 -8.4937 -3.3150 18 14 10.9310 -6.4548 -4.9394 19 1 11.4543 -5.2061 -4.3295 20 1 12.0603 -7.3746 -5.2293 21 1 10.2206 -6.1292 -6.2021 22 6 6.5947 -5.4623 -1.0204 23 6 5.5484 -4.6020 -0.7512 24 8 2.1116 -0.8872 -0.9803 25 1 -0.3633 0.3179 0.9772 26 1 -0.3633 0.6874 -0.7640 27 1 -0.3634 -1.0053 -0.2133 28 1 3.1960 1.3489 -0.2132 29 1 1.6384 2.0113 -0.7639 30 1 1.9783 1.8667 0.9773 31 1 1.4897 -1.1749 1.8801 32 1 3.1522 -0.6475 1.3680 33 1 3.5659 -3.3838 0.7803 34 1 4.2826 -2.1611 -0.2966 35 1 2.5489 -3.7849 -1.8239 36 1 3.4400 -5.5426 -3.2249 37 1 5.3148 -7.0642 -3.7010 38 1 8.1800 -7.5139 -1.4509 39 1 7.2746 -8.1927 -2.8249 40 1 10.7891 -8.9628 -3.6089 41 1 7.4800 -5.4448 -0.4020 42 1 5.6152 -3.9118 0.0768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168455979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:10 Heat of formation + Delta-G solvation = -22.032688 kcal Electronic energy + Delta-G solvation = -20224.172876 eV Core-core repulsion = 17168.743698 eV Total energy + Delta-G solvation = -3055.429178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74664 -40.22948 -36.94367 -35.05863 -33.35038 -32.39109 -31.64563 -30.64115 -28.48266 -28.29569 -26.63956 -24.58682 -23.79105 -22.24776 -21.51018 -20.18438 -18.48432 -18.15770 -17.50661 -17.29039 -16.76601 -16.44591 -15.90030 -15.58896 -15.11441 -14.82164 -14.59435 -14.51529 -14.20110 -14.12501 -13.78731 -13.49091 -13.20019 -13.16241 -13.12821 -12.91786 -12.71966 -12.53355 -12.47296 -12.41537 -11.72770 -11.63782 -11.62338 -11.34407 -11.28715 -10.64313 -10.58247 -10.57541 -9.69281 -8.30788 -7.96888 -6.29994 0.66367 0.87873 1.39382 1.42562 1.50888 2.38251 2.41660 2.72097 3.12641 3.15138 3.31416 3.75040 3.90113 3.99980 4.08853 4.15490 4.23272 4.33787 4.40431 4.50392 4.65269 4.71067 4.72750 4.73034 4.77639 4.84737 4.91721 5.00230 5.02135 5.09835 5.19153 5.33167 5.36628 5.39610 5.40858 5.51072 5.54948 5.69552 5.80785 6.02196 6.22778 6.25038 6.55591 6.83013 6.91137 7.38121 8.92020 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.002836 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.266657 B = 9869.434993 C =10227.877728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.144 4.144 4 C -0.159 4.159 5 C 0.052 3.948 6 H 0.107 0.893 7 C 0.131 3.869 8 N -0.745 5.745 9 C 0.196 3.804 10 C -0.192 4.192 11 C -0.089 4.089 12 C -0.123 4.123 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.051 0.949 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.089 4.089 23 C -0.194 4.194 24 O -0.400 6.400 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.403 0.597 36 H 0.137 0.863 37 H 0.111 0.889 38 H -0.001 1.001 39 H -0.002 1.002 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.988 18.296 10.560 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.005 4.005 6 H 0.125 0.875 7 C 0.007 3.993 8 N -0.376 5.376 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.108 4.108 12 C -0.125 4.125 13 C 0.027 3.973 14 C -0.565 4.565 15 H 0.069 0.931 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.108 4.108 23 C -0.216 4.216 24 O -0.321 6.321 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.239 0.761 36 H 0.155 0.845 37 H 0.129 0.871 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.751 18.323 10.455 29.591 hybrid contribution 0.771 -0.239 -0.916 1.220 sum -19.980 18.084 9.540 28.587 Atomic orbital electron populations 1.21970 0.91938 1.02982 1.03909 1.23038 0.94646 0.92407 0.86655 1.21828 1.00856 0.93654 1.03726 1.24719 1.03510 0.93306 0.98187 1.23655 0.97771 0.89793 0.89328 0.87500 1.21485 0.96970 0.90659 0.90203 1.44410 1.17867 1.40153 1.35214 1.17706 0.88608 0.90593 0.93736 1.20665 1.00485 0.99855 1.00376 1.20832 0.92878 0.98714 0.98359 1.20151 0.96010 0.99645 0.96652 1.17978 0.91177 0.92968 0.95191 1.21421 1.06759 1.01343 1.26993 0.93067 1.25949 0.99746 0.95515 0.98366 1.70081 1.27965 1.13250 1.45902 0.85510 0.78068 0.78385 0.79153 1.19323 1.20397 1.19371 1.20843 0.98028 0.95115 0.96791 1.20673 0.93911 1.03768 1.03291 1.89897 1.82127 1.23007 1.37030 0.89009 0.91694 0.91996 0.92672 0.91873 0.88843 0.88383 0.88204 0.89749 0.92806 0.76128 0.84547 0.87076 0.98311 0.98351 0.92625 0.87076 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.37 71.98 0.67 -0.80 16 2 C 0.07 0.96 1.82 -10.50 -0.02 0.94 16 3 C -0.14 -1.70 9.49 71.98 0.68 -1.01 16 4 C -0.16 -1.78 7.11 31.29 0.22 -1.56 16 5 C 0.05 0.81 4.16 30.88 0.13 0.94 16 6 H 0.11 1.38 7.84 -2.39 -0.02 1.36 16 7 C 0.13 2.54 4.99 86.38 0.43 2.97 16 8 N -0.74 -17.92 5.73 -339.41 -1.95 -19.86 16 9 C 0.20 6.22 6.65 38.22 0.25 6.48 16 10 C -0.19 -6.55 9.90 22.40 0.22 -6.33 16 11 C -0.09 -3.73 9.69 22.25 0.22 -3.51 16 12 C -0.12 -5.80 5.07 -19.84 -0.10 -5.90 16 13 C 0.06 3.62 5.10 29.10 0.15 3.77 16 14 C -0.53 -31.62 9.09 25.60 0.23 -31.38 16 15 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.00 0.11 5.46 84.65 0.46 0.58 16 17 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 18 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 C -0.09 -3.71 9.69 22.25 0.22 -3.50 16 23 C -0.19 -6.62 9.31 22.40 0.21 -6.41 16 24 O -0.40 -8.33 11.99 -148.98 -1.79 -10.11 16 25 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.63 7.58 -2.38 -0.02 0.62 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.10 1.10 8.05 -2.39 -0.02 1.08 16 33 H 0.08 1.43 7.95 -2.39 -0.02 1.41 16 34 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 35 H 0.40 8.56 8.49 -92.71 -0.79 7.78 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 39 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 40 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.14 3.79 6.73 -2.91 -0.02 3.77 16 Total: -1.00 -71.08 348.57 2.76 -68.32 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.20 Total: 16.21 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 3.98 Total: -44.73 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -1.66 Total: -77.60 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.79 Total: -10.11 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.08 2.76 -68.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168455979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.285 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds