Wall clock time and date at job start Mon Mar 30 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36354 * 119.91914 * 2 1 4 4 C 1.40873 * 119.83579 * 179.97438 * 3 2 1 5 5 C 1.41135 * 120.15299 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00401 * 330.13288 * 5 4 3 7 7 C 1.39868 * 119.99785 * 150.13357 * 5 4 3 8 8 N 1.30906 * 120.00218 * 161.73286 * 7 5 4 9 9 Si 1.86796 * 120.00035 * 341.72607 * 7 5 4 10 10 H 1.48499 * 109.47218 * 95.41820 * 9 7 5 11 11 H 1.48499 * 109.47177 * 215.41745 * 9 7 5 12 12 H 1.48498 * 109.47222 * 335.42108 * 9 7 5 13 13 C 1.40902 * 119.68753 * 0.02562 * 4 3 2 14 14 C 1.36319 * 119.83830 * 359.74089 * 13 4 3 15 15 C 1.39546 * 119.91942 * 179.97438 * 2 1 3 16 16 N 1.38868 * 119.84163 * 359.97438 * 15 2 1 17 17 C 1.46495 * 119.99867 * 180.02562 * 16 15 2 18 18 H 1.09007 * 109.54380 * 325.17869 * 17 16 15 19 19 C 1.53179 * 109.54332 * 85.44819 * 17 16 15 20 20 C 1.53085 * 109.16071 * 62.88510 * 19 17 16 21 21 O 1.42908 * 109.41763 * 57.60965 * 20 19 17 22 22 C 1.42897 * 114.09589 * 298.84472 * 21 20 19 23 23 C 1.53089 * 109.41928 * 61.15090 * 22 21 20 24 24 H 1.09009 * 109.52069 * 62.30230 * 23 22 21 25 25 C 1.53005 * 109.57355 * 182.45226 * 23 22 21 26 26 H 1.08996 * 109.47312 * 270.01849 * 1 2 3 27 27 H 1.08997 * 109.47316 * 30.02535 * 1 2 3 28 28 H 1.09000 * 109.47245 * 150.02300 * 1 2 3 29 29 H 1.08001 * 120.08409 * 359.95805 * 3 2 1 30 30 H 0.96996 * 120.00508 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.07697 * 180.02562 * 13 4 3 32 32 H 1.08004 * 119.92229 * 180.24979 * 14 13 4 33 33 H 0.97000 * 119.99554 * 0.02562 * 16 15 2 34 34 H 1.09005 * 109.52154 * 182.79431 * 19 17 16 35 35 H 1.08999 * 109.52191 * 302.97967 * 19 17 16 36 36 H 1.09004 * 109.48174 * 177.58921 * 20 19 17 37 37 H 1.08994 * 109.48505 * 297.62156 * 20 19 17 38 38 H 1.09007 * 109.47761 * 301.16761 * 22 21 20 39 39 H 1.09001 * 109.48134 * 181.13922 * 22 21 20 40 40 H 1.09005 * 109.46630 * 179.84613 * 25 23 22 41 41 H 1.08997 * 109.47370 * 299.84910 * 25 23 22 42 42 H 1.09000 * 109.46822 * 59.85163 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1798 0.0005 5 6 4.3065 2.3991 0.0000 6 1 3.8780 3.2738 -0.4665 7 6 5.5660 2.4747 0.6037 8 7 6.3747 3.4611 0.3094 9 14 6.0939 1.1682 1.8299 10 1 6.8926 0.1286 1.1324 11 1 6.9179 1.7935 2.8954 12 1 4.8909 0.5438 2.4366 13 6 4.2919 -0.0453 0.0005 14 6 3.5988 -1.2192 0.0054 15 6 2.2030 -1.2095 0.0005 16 7 1.5036 -2.4092 0.0016 17 6 2.2309 -3.6809 0.0028 18 1 3.1439 -3.5794 -0.5839 19 6 2.5847 -4.0676 1.4421 20 6 1.2938 -4.2832 2.2362 21 8 0.5067 -5.2915 1.5990 22 6 0.1064 -4.9640 0.2669 23 6 1.3496 -4.7756 -0.6064 24 1 1.9085 -5.7105 -0.6510 25 6 0.9267 -4.3651 -2.0184 26 1 -0.3634 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6471 2.1172 -0.0007 30 1 7.2480 3.5138 0.7283 31 1 5.3719 -0.0542 0.0014 32 1 4.1310 -2.1590 0.0094 33 1 0.5337 -2.4051 0.0016 34 1 3.1685 -4.9881 1.4389 35 1 3.1658 -3.2681 1.9016 36 1 1.5392 -4.6003 3.2498 37 1 0.7298 -3.3512 2.2733 38 1 -0.4732 -4.0409 0.2781 39 1 -0.5035 -5.7714 -0.1383 40 1 1.8132 -4.2288 -2.6379 41 1 0.2978 -5.1436 -2.4502 42 1 0.3680 -3.4303 -1.9729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170826477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:48 Heat of formation + Delta-G solvation = -35.333460 kcal Electronic energy + Delta-G solvation = -21988.598880 eV Core-core repulsion = 18932.592938 eV Total energy + Delta-G solvation = -3056.005942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04372 -38.19046 -35.59010 -33.83546 -32.66606 -31.96214 -30.95490 -28.83369 -26.78683 -26.25848 -25.01288 -24.00740 -22.23523 -21.09753 -20.25947 -18.88595 -17.28773 -16.78728 -16.13289 -15.84901 -15.63190 -14.97281 -14.61865 -14.29138 -13.81761 -13.62454 -13.16878 -13.08734 -12.70082 -12.54477 -12.45907 -12.26591 -12.02333 -11.86282 -11.77501 -11.65538 -11.41480 -11.10807 -10.99487 -10.69917 -10.47161 -10.33873 -10.16926 -9.89981 -9.50800 -9.50258 -9.13667 -8.69828 -7.63464 -6.77047 -6.57891 -4.17251 2.65748 2.77993 3.18406 3.28935 3.39735 3.82579 4.09614 4.10514 4.57858 4.62049 4.75338 4.86203 5.06670 5.13897 5.38318 5.41549 5.47924 5.48336 5.60357 5.71244 5.74167 5.82089 5.86415 5.91773 5.99917 6.04366 6.11626 6.15317 6.19080 6.21169 6.33446 6.52576 6.68118 6.95703 7.14246 7.15812 7.25264 7.44570 7.62161 7.94162 8.05825 8.28581 8.47769 8.55349 8.84156 8.98657 10.27475 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.005265 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.320856 B = 5317.293616 C = 5771.176417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.119 4.119 3 C -0.166 4.166 4 C 0.062 3.938 5 C -0.455 4.455 6 H 0.085 0.915 7 C 0.083 3.917 8 N -0.824 5.824 9 Si 0.908 3.092 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.247 1.247 13 C -0.200 4.200 14 C -0.143 4.143 15 C 0.099 3.901 16 N -0.751 5.751 17 C 0.164 3.836 18 H 0.077 0.923 19 C -0.173 4.173 20 C 0.065 3.935 21 O -0.386 6.386 22 C 0.067 3.933 23 C -0.133 4.133 24 H 0.084 0.916 25 C -0.141 4.141 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.280 0.720 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.384 0.616 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 -14.863 0.408 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.186 4.186 4 C 0.058 3.942 5 C -0.485 4.485 6 H 0.103 0.897 7 C -0.133 4.133 8 N -0.451 5.451 9 Si 0.735 3.265 10 H -0.201 1.201 11 H -0.222 1.222 12 H -0.170 1.170 13 C -0.219 4.219 14 C -0.165 4.165 15 C 0.002 3.998 16 N -0.387 5.387 17 C 0.057 3.943 18 H 0.095 0.905 19 C -0.212 4.212 20 C -0.011 4.011 21 O -0.305 6.305 22 C -0.010 4.010 23 C -0.152 4.152 24 H 0.102 0.898 25 C -0.198 4.198 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.220 0.780 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.919 -14.946 0.500 17.412 hybrid contribution 0.346 -0.155 0.400 0.551 sum -8.573 -15.101 0.899 17.388 Atomic orbital electron populations 1.20522 0.93663 1.00756 1.00498 1.18772 0.93712 0.92294 1.07537 1.20506 0.93894 0.95254 1.08983 1.17613 0.91680 0.92663 0.92205 1.19264 0.99901 0.96770 1.32596 0.89673 1.26039 0.95073 0.95848 0.96324 1.69740 1.07654 1.30939 1.36737 0.86377 0.79550 0.80355 0.80194 1.20086 1.22210 1.16995 1.20630 0.97979 0.92607 1.10725 1.19958 0.91875 0.97038 1.07590 1.17052 0.90607 0.84522 1.07646 1.44051 1.06505 1.01656 1.86523 1.20647 0.95404 0.83861 0.94434 0.90468 1.22686 0.98439 1.02094 0.98024 1.22499 0.91355 0.91449 0.95817 1.87889 1.71119 1.44062 1.27447 1.22577 0.95217 1.00619 0.82544 1.22026 0.97851 0.99322 0.96018 0.89781 1.21688 1.01769 1.01340 0.95048 0.92898 0.92471 0.93585 0.88229 0.90945 0.88374 0.88824 0.78010 0.91258 0.90161 0.89419 0.92743 0.93415 0.89176 0.92194 0.92907 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 9.55 36.00 0.34 -1.19 16 2 C -0.12 -2.39 5.86 -104.82 -0.61 -3.01 16 3 C -0.17 -3.83 9.37 -39.26 -0.37 -4.20 16 4 C 0.06 1.58 5.10 -106.79 -0.54 1.03 16 5 C -0.46 -12.61 9.55 -37.87 -0.36 -12.97 16 6 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 7 C 0.08 2.25 5.40 -17.34 -0.09 2.16 16 8 N -0.82 -22.82 13.93 55.54 0.77 -22.05 16 9 Si 0.91 21.44 24.51 -169.99 -4.17 17.28 16 10 H -0.27 -6.30 6.70 56.52 0.38 -5.92 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.25 -5.94 6.87 56.52 0.39 -5.55 16 13 C -0.20 -4.81 7.12 -39.27 -0.28 -5.09 16 14 C -0.14 -3.01 8.79 -39.77 -0.35 -3.36 16 15 C 0.10 1.91 6.64 -83.68 -0.56 1.36 16 16 N -0.75 -11.32 3.71 -51.86 -0.19 -11.51 16 17 C 0.16 2.18 1.97 -67.75 -0.13 2.04 16 18 H 0.08 1.12 6.45 -51.92 -0.34 0.78 16 19 C -0.17 -2.25 5.74 -26.59 -0.15 -2.40 16 20 C 0.07 0.81 6.68 37.20 0.25 1.06 16 21 O -0.39 -4.90 10.77 -35.23 -0.38 -5.28 16 22 C 0.07 0.72 5.95 37.20 0.22 0.94 16 23 C -0.13 -1.44 2.71 -90.48 -0.24 -1.68 16 24 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 25 C -0.14 -1.44 9.02 37.16 0.34 -1.11 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.05 0.63 6.53 -51.93 -0.34 0.29 16 29 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 31 H 0.10 2.41 4.73 -52.48 -0.25 2.16 16 32 H 0.09 1.78 6.15 -52.48 -0.32 1.46 16 33 H 0.38 5.31 4.63 -40.82 -0.19 5.12 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.18 7.81 -51.93 -0.41 0.78 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.72 7.75 -51.93 -0.40 0.32 16 38 H 0.05 0.51 6.71 -51.93 -0.35 0.16 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.68 7.27 -51.93 -0.38 0.30 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -28.14 320.57 -8.05 -36.19 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.36 Total: 6.96 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -2.55 Total: -26.42 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.58 Total: -33.56 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.38 Total: -5.28 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.17 Total: 17.28 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.14 -8.05 -36.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.855 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds