Wall clock time and date at job start Mon Mar 30 2020 01:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36354 * 119.91914 * 2 1 4 4 C 1.40873 * 119.83579 * 179.97438 * 3 2 1 5 5 C 1.41135 * 120.15299 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00401 * 330.13288 * 5 4 3 7 7 C 1.39868 * 119.99785 * 150.13357 * 5 4 3 8 8 N 1.30906 * 120.00218 * 161.73286 * 7 5 4 9 9 Si 1.86796 * 120.00035 * 341.72607 * 7 5 4 10 10 H 1.48499 * 109.47218 * 95.41820 * 9 7 5 11 11 H 1.48499 * 109.47177 * 215.41745 * 9 7 5 12 12 H 1.48498 * 109.47222 * 335.42108 * 9 7 5 13 13 C 1.40902 * 119.68753 * 0.02562 * 4 3 2 14 14 C 1.36319 * 119.83830 * 359.74089 * 13 4 3 15 15 C 1.39546 * 119.91942 * 179.97438 * 2 1 3 16 16 N 1.38868 * 119.84163 * 359.97438 * 15 2 1 17 17 C 1.46495 * 119.99867 * 180.02562 * 16 15 2 18 18 H 1.09007 * 109.54380 * 325.17869 * 17 16 15 19 19 C 1.53179 * 109.54332 * 85.44819 * 17 16 15 20 20 C 1.53085 * 109.16071 * 62.88510 * 19 17 16 21 21 O 1.42908 * 109.41763 * 57.60965 * 20 19 17 22 22 C 1.42897 * 114.09589 * 298.84472 * 21 20 19 23 23 C 1.53089 * 109.41928 * 61.15090 * 22 21 20 24 24 H 1.09009 * 109.52069 * 62.30230 * 23 22 21 25 25 C 1.53005 * 109.57355 * 182.45226 * 23 22 21 26 26 H 1.08996 * 109.47312 * 270.01849 * 1 2 3 27 27 H 1.08997 * 109.47316 * 30.02535 * 1 2 3 28 28 H 1.09000 * 109.47245 * 150.02300 * 1 2 3 29 29 H 1.08001 * 120.08409 * 359.95805 * 3 2 1 30 30 H 0.96996 * 120.00508 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.07697 * 180.02562 * 13 4 3 32 32 H 1.08004 * 119.92229 * 180.24979 * 14 13 4 33 33 H 0.97000 * 119.99554 * 0.02562 * 16 15 2 34 34 H 1.09005 * 109.52154 * 182.79431 * 19 17 16 35 35 H 1.08999 * 109.52191 * 302.97967 * 19 17 16 36 36 H 1.09004 * 109.48174 * 177.58921 * 20 19 17 37 37 H 1.08994 * 109.48505 * 297.62156 * 20 19 17 38 38 H 1.09007 * 109.47761 * 301.16761 * 22 21 20 39 39 H 1.09001 * 109.48134 * 181.13922 * 22 21 20 40 40 H 1.09005 * 109.46630 * 179.84613 * 25 23 22 41 41 H 1.08997 * 109.47370 * 299.84910 * 25 23 22 42 42 H 1.09000 * 109.46822 * 59.85163 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1798 0.0005 5 6 4.3065 2.3991 0.0000 6 1 3.8780 3.2738 -0.4665 7 6 5.5660 2.4747 0.6037 8 7 6.3747 3.4611 0.3094 9 14 6.0939 1.1682 1.8299 10 1 6.8926 0.1286 1.1324 11 1 6.9179 1.7935 2.8954 12 1 4.8909 0.5438 2.4366 13 6 4.2919 -0.0453 0.0005 14 6 3.5988 -1.2192 0.0054 15 6 2.2030 -1.2095 0.0005 16 7 1.5036 -2.4092 0.0016 17 6 2.2309 -3.6809 0.0028 18 1 3.1439 -3.5794 -0.5839 19 6 2.5847 -4.0676 1.4421 20 6 1.2938 -4.2832 2.2362 21 8 0.5067 -5.2915 1.5990 22 6 0.1064 -4.9640 0.2669 23 6 1.3496 -4.7756 -0.6064 24 1 1.9085 -5.7105 -0.6510 25 6 0.9267 -4.3651 -2.0184 26 1 -0.3634 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6471 2.1172 -0.0007 30 1 7.2480 3.5138 0.7283 31 1 5.3719 -0.0542 0.0014 32 1 4.1310 -2.1590 0.0094 33 1 0.5337 -2.4051 0.0016 34 1 3.1685 -4.9881 1.4389 35 1 3.1658 -3.2681 1.9016 36 1 1.5392 -4.6003 3.2498 37 1 0.7298 -3.3512 2.2733 38 1 -0.4732 -4.0409 0.2781 39 1 -0.5035 -5.7714 -0.1383 40 1 1.8132 -4.2288 -2.6379 41 1 0.2978 -5.1436 -2.4502 42 1 0.3680 -3.4303 -1.9729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170826477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:47 Heat of formation + Delta-G solvation = -51.718843 kcal Electronic energy + Delta-G solvation = -21989.309403 eV Core-core repulsion = 18932.592938 eV Total energy + Delta-G solvation = -3056.716466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17294 -39.73068 -36.89112 -35.46564 -33.96379 -33.52298 -32.26734 -30.49753 -27.86501 -27.66690 -26.20686 -25.56684 -23.19825 -22.66955 -21.98924 -20.08504 -19.00989 -18.40775 -17.11090 -17.01013 -16.87013 -16.69526 -15.65821 -15.48170 -15.35675 -15.05596 -14.67884 -14.44059 -14.30059 -14.00462 -13.89930 -13.45963 -13.33662 -13.13690 -12.94181 -12.85240 -12.65684 -12.54383 -12.45605 -12.09020 -11.95451 -11.73238 -11.62038 -11.36719 -11.21441 -10.99848 -10.52647 -10.26547 -9.37688 -8.77019 -8.23432 -6.16868 0.87178 0.96987 1.26783 1.42199 1.50105 2.17126 2.69531 2.78272 2.96499 3.57904 3.68698 3.87516 3.90832 4.05473 4.23922 4.24996 4.27865 4.44263 4.51001 4.58861 4.66776 4.68132 4.78860 4.83605 4.88707 4.92844 4.97429 4.99293 5.04237 5.09714 5.16896 5.19151 5.20353 5.37693 5.42967 5.51826 5.68916 5.85908 6.02320 6.24922 6.27425 6.44821 6.67797 6.91198 6.98721 7.19837 8.33791 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.005265 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.320856 B = 5317.293616 C = 5771.176417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.128 4.128 3 C -0.172 4.172 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.047 0.953 7 C 0.043 3.957 8 N -0.872 5.872 9 Si 0.964 3.036 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.255 1.255 13 C -0.206 4.206 14 C -0.156 4.156 15 C 0.133 3.867 16 N -0.735 5.735 17 C 0.156 3.844 18 H 0.068 0.932 19 C -0.170 4.170 20 C 0.067 3.933 21 O -0.395 6.395 22 C 0.063 3.937 23 C -0.123 4.123 24 H 0.095 0.905 25 C -0.139 4.139 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.287 0.713 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.396 0.604 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.112 0.888 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 -18.715 0.772 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.025 3.975 5 C -0.521 4.521 6 H 0.065 0.935 7 C -0.168 4.168 8 N -0.501 5.501 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.178 1.178 13 C -0.226 4.226 14 C -0.178 4.178 15 C 0.033 3.967 16 N -0.371 5.371 17 C 0.050 3.950 18 H 0.086 0.914 19 C -0.210 4.210 20 C -0.009 4.009 21 O -0.314 6.314 22 C -0.013 4.013 23 C -0.142 4.142 24 H 0.113 0.887 25 C -0.196 4.196 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.233 0.767 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.091 -18.840 0.858 21.879 hybrid contribution 0.750 0.809 0.203 1.122 sum -10.341 -18.031 1.060 20.813 Atomic orbital electron populations 1.20557 0.90062 1.02429 1.01981 1.19191 0.96388 0.91316 1.06317 1.20683 0.93229 0.96702 1.08584 1.17710 0.92898 0.92387 0.94481 1.19256 1.01316 0.96750 1.34812 0.93469 1.26685 0.94903 0.97740 0.97482 1.69785 1.08511 1.33028 1.38769 0.85506 0.78912 0.78319 0.78367 1.18957 1.21004 1.17844 1.20663 0.97806 0.93139 1.10943 1.20168 0.92854 0.96934 1.07890 1.17206 0.90325 0.85983 1.03227 1.44101 1.07115 1.01049 1.84824 1.20856 0.95577 0.83584 0.94999 0.91376 1.22639 0.98830 1.02093 0.97391 1.22478 0.90783 0.91248 0.96404 1.87896 1.71043 1.44104 1.28376 1.22754 0.95165 1.01745 0.81661 1.21968 0.97602 0.98515 0.96160 0.88700 1.21671 1.01685 1.01741 0.94534 0.91352 0.91780 0.91068 0.88374 0.90328 0.89272 0.86552 0.76676 0.89839 0.92042 0.88319 0.93570 0.93161 0.86960 0.93036 0.90698 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.60 9.55 71.23 0.68 -1.92 16 2 C -0.13 -4.88 5.86 -19.99 -0.12 -4.99 16 3 C -0.17 -7.99 9.37 22.48 0.21 -7.78 16 4 C 0.03 1.49 5.10 -21.27 -0.11 1.39 16 5 C -0.49 -28.92 9.55 23.38 0.22 -28.69 16 6 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 7 C 0.04 2.42 5.40 85.23 0.46 2.88 16 8 N -0.87 -50.94 13.93 21.82 0.30 -50.64 16 9 Si 0.96 45.50 24.51 68.60 1.68 47.18 16 10 H -0.26 -11.82 6.70 99.48 0.67 -11.16 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.25 -12.16 6.87 99.48 0.68 -11.47 16 13 C -0.21 -9.97 7.12 22.47 0.16 -9.81 16 14 C -0.16 -6.35 8.79 22.15 0.19 -6.15 16 15 C 0.13 4.79 6.64 38.67 0.26 5.04 16 16 N -0.74 -19.49 3.71 -317.97 -1.18 -20.67 16 17 C 0.16 3.60 1.97 45.11 0.09 3.69 16 18 H 0.07 1.75 6.45 -2.38 -0.02 1.74 16 19 C -0.17 -3.86 5.74 30.68 0.18 -3.69 16 20 C 0.07 1.44 6.68 72.01 0.48 1.92 16 21 O -0.40 -8.41 10.77 -148.98 -1.60 -10.01 16 22 C 0.06 1.06 5.95 72.01 0.43 1.49 16 23 C -0.12 -2.14 2.71 -10.70 -0.03 -2.17 16 24 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 25 C -0.14 -2.27 9.02 71.98 0.65 -1.62 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 28 H 0.07 1.62 6.53 -2.39 -0.02 1.61 16 29 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 30 H 0.29 15.17 8.30 -92.71 -0.77 14.40 16 31 H 0.09 4.42 4.73 -2.91 -0.01 4.41 16 32 H 0.12 4.16 6.15 -2.91 -0.02 4.15 16 33 H 0.40 9.15 4.63 -92.71 -0.43 8.72 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 36 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 38 H 0.05 0.82 6.71 -2.38 -0.02 0.81 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 0.96 7.27 -2.39 -0.02 0.94 16 Total: -1.00 -64.03 320.57 3.48 -60.55 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.52 Total: 24.01 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 3.75 Total: -50.42 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.88 Total: -71.31 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -1.60 Total: -10.01 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.68 Total: 47.18 kcal Total: -64.03 3.48 -60.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.834 kcal (2) G-P(sol) polarization free energy of solvation -64.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds