Wall clock time and date at job start Mon Mar 30 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36356 * 119.92049 * 2 1 4 4 C 1.40863 * 119.83704 * 180.25225 * 3 2 1 5 5 C 1.41142 * 120.15499 * 179.72078 * 4 3 2 6 6 H 1.08005 * 120.00100 * 204.62964 * 5 4 3 7 7 C 1.39865 * 120.00183 * 24.62837 * 5 4 3 8 8 N 1.30906 * 120.00032 * 17.96061 * 7 5 4 9 9 Si 1.86798 * 120.00009 * 197.96771 * 7 5 4 10 10 H 1.48496 * 109.47414 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47008 * 119.99915 * 9 7 5 12 12 H 1.48503 * 109.47109 * 239.99490 * 9 7 5 13 13 C 1.40902 * 119.69399 * 359.74050 * 4 3 2 14 14 C 1.36330 * 119.83282 * 0.02562 * 13 4 3 15 15 C 1.39551 * 119.91940 * 179.74130 * 2 1 3 16 16 N 1.38850 * 119.84188 * 0.02562 * 15 2 1 17 17 C 1.46506 * 119.99954 * 179.72725 * 16 15 2 18 18 H 1.08995 * 109.54435 * 34.82253 * 17 16 15 19 19 C 1.53179 * 109.54173 * 274.55610 * 17 16 15 20 20 C 1.53098 * 109.16190 * 297.11557 * 19 17 16 21 21 O 1.42909 * 109.41074 * 302.38745 * 20 19 17 22 22 C 1.42900 * 114.09685 * 61.16640 * 21 20 19 23 23 C 1.53088 * 109.41243 * 298.83596 * 22 21 20 24 24 H 1.09001 * 109.52567 * 297.70692 * 23 22 21 25 25 C 1.52999 * 109.57572 * 177.54740 * 23 22 21 26 26 H 1.09000 * 109.46691 * 270.26046 * 1 2 3 27 27 H 1.09002 * 109.47169 * 30.25991 * 1 2 3 28 28 H 1.09004 * 109.46735 * 150.26167 * 1 2 3 29 29 H 1.08004 * 120.08230 * 359.97438 * 3 2 1 30 30 H 0.96994 * 120.00132 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.08575 * 180.02562 * 13 4 3 32 32 H 1.07992 * 119.91970 * 180.02562 * 14 13 4 33 33 H 0.97003 * 120.00387 * 359.45041 * 16 15 2 34 34 H 1.08995 * 109.52431 * 57.01871 * 19 17 16 35 35 H 1.08991 * 109.52406 * 177.21003 * 19 17 16 36 36 H 1.09005 * 109.47741 * 182.41424 * 20 19 17 37 37 H 1.08994 * 109.48523 * 62.37202 * 20 19 17 38 38 H 1.08994 * 109.48068 * 178.85463 * 22 21 20 39 39 H 1.08996 * 109.49419 * 58.82103 * 22 21 20 40 40 H 1.08997 * 109.47072 * 300.28261 * 25 23 22 41 41 H 1.08997 * 109.47080 * 60.28510 * 25 23 22 42 42 H 1.09006 * 109.47189 * 180.28401 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1798 -0.0054 5 6 4.3066 2.3992 -0.0114 6 1 5.3116 2.4365 -0.4051 7 6 3.7094 3.5592 0.4926 8 7 2.6641 3.4702 1.2756 9 14 4.4034 5.2356 0.0482 10 1 5.5782 5.0644 -0.8438 11 1 3.3631 6.0327 -0.6500 12 1 4.8209 5.9424 1.2857 13 6 4.2920 -0.0452 -0.0052 14 6 3.5989 -1.2192 -0.0003 15 6 2.2031 -1.2095 0.0055 16 7 1.5038 -2.4091 0.0103 17 6 2.2311 -3.6809 0.0100 18 1 3.1462 -3.5778 0.5930 19 6 2.5796 -4.0715 -1.4295 20 6 1.2857 -4.2892 -2.2184 21 8 0.5011 -5.2959 -1.5755 22 6 0.1055 -4.9647 -0.2428 23 6 1.3519 -4.7740 0.6254 24 1 1.9110 -5.7086 0.6704 25 6 0.9343 -4.3595 2.0377 26 1 -0.3633 0.0047 1.0277 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3633 -0.8924 -0.5098 29 1 1.6472 2.1172 -0.0004 30 1 2.2498 4.2746 1.6247 31 1 5.3719 -0.0542 -0.0089 32 1 4.1311 -2.1589 0.0003 33 1 0.5338 -2.4051 0.0180 34 1 3.1590 -3.2733 -1.8934 35 1 3.1633 -4.9919 -1.4261 36 1 1.5275 -4.6091 -3.2320 37 1 0.7216 -3.3574 -2.2559 38 1 -0.5029 -5.7709 0.1667 39 1 -0.4741 -4.0417 -0.2543 40 1 0.3735 -3.4260 1.9915 41 1 0.3089 -5.1379 2.4748 42 1 1.8231 -4.2193 2.6530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170826479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:56 Heat of formation + Delta-G solvation = -36.503083 kcal Electronic energy + Delta-G solvation = -21852.077267 eV Core-core repulsion = 18796.020606 eV Total energy + Delta-G solvation = -3056.056661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91865 -37.91488 -35.46583 -33.77382 -32.44861 -31.80280 -30.65222 -28.30060 -26.69048 -25.85577 -24.92406 -24.16787 -22.15777 -21.03834 -19.75227 -18.83222 -16.95678 -16.66440 -16.04003 -15.65983 -15.54460 -14.91690 -14.49888 -14.17994 -13.76445 -13.41706 -12.98246 -12.81673 -12.77772 -12.32021 -12.11256 -11.93145 -11.92763 -11.56352 -11.51212 -11.39199 -11.17410 -11.03565 -10.96427 -10.77780 -10.61879 -10.31771 -10.21724 -9.59708 -9.43802 -9.30530 -9.15700 -8.52616 -7.32314 -6.64297 -6.35556 -4.03063 2.89073 3.06454 3.15201 3.20586 3.34425 3.90307 4.05538 4.27278 4.70847 4.72949 4.85136 4.95749 5.16116 5.22828 5.47254 5.50547 5.56969 5.69382 5.75016 5.82855 5.94412 5.96959 6.02976 6.08891 6.12021 6.15360 6.25514 6.31535 6.35039 6.42759 6.57406 6.82093 7.09002 7.22166 7.26394 7.32191 7.60854 7.68569 7.81198 8.16455 8.35265 8.48939 8.66856 8.79808 9.06617 9.15733 10.37327 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.004301 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.631899 B = 6508.289669 C = 6678.674470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.137 4.137 3 C -0.120 4.120 4 C 0.076 3.924 5 C -0.467 4.467 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.807 5.807 9 Si 0.901 3.099 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.277 1.277 13 C -0.190 4.190 14 C -0.158 4.158 15 C 0.099 3.901 16 N -0.751 5.751 17 C 0.165 3.835 18 H 0.076 0.924 19 C -0.171 4.171 20 C 0.065 3.935 21 O -0.387 6.387 22 C 0.068 3.932 23 C -0.133 4.133 24 H 0.083 0.917 25 C -0.141 4.141 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.119 0.881 30 H 0.275 0.725 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.383 0.617 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 -12.070 -1.682 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C -0.140 4.140 4 C 0.073 3.927 5 C -0.498 4.498 6 H 0.090 0.910 7 C -0.140 4.140 8 N -0.435 5.435 9 Si 0.726 3.274 10 H -0.186 1.186 11 H -0.200 1.200 12 H -0.203 1.203 13 C -0.210 4.210 14 C -0.180 4.180 15 C 0.002 3.998 16 N -0.388 5.388 17 C 0.058 3.942 18 H 0.094 0.906 19 C -0.211 4.211 20 C -0.011 4.011 21 O -0.306 6.306 22 C -0.009 4.009 23 C -0.152 4.152 24 H 0.101 0.899 25 C -0.199 4.199 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.218 0.782 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.767 -12.181 -1.628 13.181 hybrid contribution 0.153 1.135 0.083 1.148 sum -4.613 -11.046 -1.545 12.070 Atomic orbital electron populations 1.20463 0.94142 1.00110 1.00210 1.18854 0.93582 0.92483 1.09148 1.20819 0.94380 0.95661 1.03121 1.17475 0.91808 0.92049 0.91393 1.19392 1.01190 0.92498 1.36719 0.90981 1.25779 0.94436 1.00919 0.92843 1.69863 1.19467 1.30543 1.23615 0.86393 0.79899 0.82008 0.79127 1.18647 1.19981 1.20296 1.20554 0.97421 0.92382 1.10666 1.19864 0.91745 0.96829 1.09607 1.17102 0.90703 0.84349 1.07636 1.44052 1.06406 1.01677 1.86679 1.20607 0.95368 0.83962 0.94253 0.90605 1.22670 0.98297 1.01917 0.98176 1.22503 0.91471 0.91470 0.95694 1.87879 1.71349 1.44059 1.27328 1.22571 0.95280 1.00570 0.82523 1.22026 0.97842 0.99338 0.96029 0.89915 1.21685 1.01777 1.01345 0.95045 0.93178 0.92829 0.94134 0.86331 0.91429 0.89277 0.89393 0.78196 0.90134 0.91461 0.89508 0.92749 0.89256 0.93390 0.91977 0.93005 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.55 36.01 0.34 -1.35 16 2 C -0.14 -3.07 5.86 -104.81 -0.61 -3.68 16 3 C -0.12 -3.08 8.27 -39.27 -0.32 -3.41 16 4 C 0.08 2.02 5.57 -106.79 -0.60 1.43 16 5 C -0.47 -12.65 9.03 -37.87 -0.34 -12.99 16 6 H 0.07 1.90 7.91 -52.48 -0.41 1.49 16 7 C 0.08 1.94 5.13 -17.34 -0.09 1.85 16 8 N -0.81 -21.36 10.96 55.54 0.61 -20.75 16 9 Si 0.90 19.23 29.60 -169.99 -5.03 14.20 16 10 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 14 C -0.16 -3.46 8.80 -39.76 -0.35 -3.81 16 15 C 0.10 2.06 6.64 -83.69 -0.56 1.50 16 16 N -0.75 -12.30 3.72 -51.85 -0.19 -12.50 16 17 C 0.17 2.34 1.97 -67.74 -0.13 2.20 16 18 H 0.08 1.17 6.44 -51.93 -0.33 0.84 16 19 C -0.17 -2.30 5.75 -26.59 -0.15 -2.45 16 20 C 0.07 0.84 6.68 37.21 0.25 1.09 16 21 O -0.39 -5.16 10.77 -35.23 -0.38 -5.53 16 22 C 0.07 0.78 5.95 37.20 0.22 1.00 16 23 C -0.13 -1.56 2.70 -90.48 -0.24 -1.80 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 C -0.14 -1.60 9.01 37.16 0.33 -1.26 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.04 0.65 6.54 -51.93 -0.34 0.31 16 29 H 0.12 3.19 6.16 -52.48 -0.32 2.87 16 30 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 31 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.09 1.72 6.17 -52.49 -0.32 1.40 16 33 H 0.38 5.90 4.63 -40.82 -0.19 5.71 16 34 H 0.08 1.21 7.83 -51.93 -0.41 0.80 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.76 7.75 -51.93 -0.40 0.36 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.56 6.71 -51.93 -0.35 0.21 16 40 H 0.06 0.78 7.26 -51.93 -0.38 0.40 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -27.61 325.86 -9.11 -36.72 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.40 Total: 9.67 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.64 Total: -26.73 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.42 Total: -33.24 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.61 -9.11 -36.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.219 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds