Wall clock time and date at job start Mon Mar 30 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36356 * 119.92049 * 2 1 4 4 C 1.40863 * 119.83704 * 180.25225 * 3 2 1 5 5 C 1.41142 * 120.15499 * 179.72078 * 4 3 2 6 6 H 1.08005 * 120.00100 * 204.62964 * 5 4 3 7 7 C 1.39865 * 120.00183 * 24.62837 * 5 4 3 8 8 N 1.30906 * 120.00032 * 17.96061 * 7 5 4 9 9 Si 1.86798 * 120.00009 * 197.96771 * 7 5 4 10 10 H 1.48496 * 109.47414 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47008 * 119.99915 * 9 7 5 12 12 H 1.48503 * 109.47109 * 239.99490 * 9 7 5 13 13 C 1.40902 * 119.69399 * 359.74050 * 4 3 2 14 14 C 1.36330 * 119.83282 * 0.02562 * 13 4 3 15 15 C 1.39551 * 119.91940 * 179.74130 * 2 1 3 16 16 N 1.38850 * 119.84188 * 0.02562 * 15 2 1 17 17 C 1.46506 * 119.99954 * 179.72725 * 16 15 2 18 18 H 1.08995 * 109.54435 * 34.82253 * 17 16 15 19 19 C 1.53179 * 109.54173 * 274.55610 * 17 16 15 20 20 C 1.53098 * 109.16190 * 297.11557 * 19 17 16 21 21 O 1.42909 * 109.41074 * 302.38745 * 20 19 17 22 22 C 1.42900 * 114.09685 * 61.16640 * 21 20 19 23 23 C 1.53088 * 109.41243 * 298.83596 * 22 21 20 24 24 H 1.09001 * 109.52567 * 297.70692 * 23 22 21 25 25 C 1.52999 * 109.57572 * 177.54740 * 23 22 21 26 26 H 1.09000 * 109.46691 * 270.26046 * 1 2 3 27 27 H 1.09002 * 109.47169 * 30.25991 * 1 2 3 28 28 H 1.09004 * 109.46735 * 150.26167 * 1 2 3 29 29 H 1.08004 * 120.08230 * 359.97438 * 3 2 1 30 30 H 0.96994 * 120.00132 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.08575 * 180.02562 * 13 4 3 32 32 H 1.07992 * 119.91970 * 180.02562 * 14 13 4 33 33 H 0.97003 * 120.00387 * 359.45041 * 16 15 2 34 34 H 1.08995 * 109.52431 * 57.01871 * 19 17 16 35 35 H 1.08991 * 109.52406 * 177.21003 * 19 17 16 36 36 H 1.09005 * 109.47741 * 182.41424 * 20 19 17 37 37 H 1.08994 * 109.48523 * 62.37202 * 20 19 17 38 38 H 1.08994 * 109.48068 * 178.85463 * 22 21 20 39 39 H 1.08996 * 109.49419 * 58.82103 * 22 21 20 40 40 H 1.08997 * 109.47072 * 300.28261 * 25 23 22 41 41 H 1.08997 * 109.47080 * 60.28510 * 25 23 22 42 42 H 1.09006 * 109.47189 * 180.28401 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1798 -0.0054 5 6 4.3066 2.3992 -0.0114 6 1 5.3116 2.4365 -0.4051 7 6 3.7094 3.5592 0.4926 8 7 2.6641 3.4702 1.2756 9 14 4.4034 5.2356 0.0482 10 1 5.5782 5.0644 -0.8438 11 1 3.3631 6.0327 -0.6500 12 1 4.8209 5.9424 1.2857 13 6 4.2920 -0.0452 -0.0052 14 6 3.5989 -1.2192 -0.0003 15 6 2.2031 -1.2095 0.0055 16 7 1.5038 -2.4091 0.0103 17 6 2.2311 -3.6809 0.0100 18 1 3.1462 -3.5778 0.5930 19 6 2.5796 -4.0715 -1.4295 20 6 1.2857 -4.2892 -2.2184 21 8 0.5011 -5.2959 -1.5755 22 6 0.1055 -4.9647 -0.2428 23 6 1.3519 -4.7740 0.6254 24 1 1.9110 -5.7086 0.6704 25 6 0.9343 -4.3595 2.0377 26 1 -0.3633 0.0047 1.0277 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3633 -0.8924 -0.5098 29 1 1.6472 2.1172 -0.0004 30 1 2.2498 4.2746 1.6247 31 1 5.3719 -0.0542 -0.0089 32 1 4.1311 -2.1589 0.0003 33 1 0.5338 -2.4051 0.0180 34 1 3.1590 -3.2733 -1.8934 35 1 3.1633 -4.9919 -1.4261 36 1 1.5275 -4.6091 -3.2320 37 1 0.7216 -3.3574 -2.2559 38 1 -0.5029 -5.7709 0.1667 39 1 -0.4741 -4.0417 -0.2543 40 1 0.3735 -3.4260 1.9915 41 1 0.3089 -5.1379 2.4748 42 1 1.8231 -4.2193 2.6530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170826479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:55 Heat of formation + Delta-G solvation = -50.771230 kcal Electronic energy + Delta-G solvation = -21852.695980 eV Core-core repulsion = 18796.020606 eV Total energy + Delta-G solvation = -3056.675374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09311 -39.54184 -36.83920 -35.38196 -33.76238 -33.43645 -32.04530 -30.05804 -27.68568 -27.57206 -26.28367 -25.67948 -23.19710 -22.67098 -21.51867 -20.10159 -18.84180 -18.07894 -17.13733 -17.02456 -16.79745 -16.52110 -15.59987 -15.43828 -15.29167 -14.92688 -14.57061 -14.39572 -14.04945 -13.66777 -13.58973 -13.29057 -13.13027 -12.99190 -12.96781 -12.84935 -12.68675 -12.62801 -12.41506 -12.19739 -11.98243 -11.62834 -11.45232 -11.22650 -11.14403 -11.01281 -10.45176 -10.17437 -9.17464 -8.54076 -8.08911 -5.98710 1.09969 1.20630 1.39272 1.53130 1.58412 2.27268 2.82764 2.88582 2.97789 3.70733 3.81455 3.89503 3.94533 4.08620 4.27857 4.37474 4.41327 4.47271 4.52905 4.63903 4.69247 4.79370 4.84431 4.88588 4.93350 4.96603 4.99166 5.09717 5.12492 5.17477 5.20666 5.24967 5.37725 5.39599 5.51986 5.79403 5.85645 5.96768 6.24315 6.25248 6.46242 6.71075 6.90351 7.10768 7.14799 7.33190 8.49131 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.004301 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.631899 B = 6508.289669 C = 6678.674470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.151 4.151 3 C -0.140 4.140 4 C 0.035 3.965 5 C -0.507 4.507 6 H 0.063 0.937 7 C 0.034 3.966 8 N -0.841 5.841 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.266 1.266 12 H -0.269 1.269 13 C -0.203 4.203 14 C -0.164 4.164 15 C 0.122 3.878 16 N -0.738 5.738 17 C 0.158 3.842 18 H 0.065 0.935 19 C -0.167 4.167 20 C 0.067 3.933 21 O -0.395 6.395 22 C 0.064 3.936 23 C -0.124 4.124 24 H 0.097 0.903 25 C -0.139 4.139 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.281 0.719 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.391 0.609 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.113 0.887 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -14.018 -1.796 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 C -0.160 4.160 4 C 0.033 3.967 5 C -0.538 4.538 6 H 0.082 0.918 7 C -0.178 4.178 8 N -0.469 5.469 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.191 1.191 12 H -0.194 1.194 13 C -0.223 4.223 14 C -0.186 4.186 15 C 0.023 3.977 16 N -0.374 5.374 17 C 0.052 3.948 18 H 0.083 0.917 19 C -0.206 4.206 20 C -0.009 4.009 21 O -0.313 6.313 22 C -0.012 4.012 23 C -0.143 4.143 24 H 0.115 0.885 25 C -0.196 4.196 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.228 0.772 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.865 -14.179 -1.742 15.443 hybrid contribution 0.436 1.503 0.129 1.570 sum -5.429 -12.676 -1.613 13.884 Atomic orbital electron populations 1.20441 0.91242 1.01451 1.01122 1.19229 0.95871 0.91990 1.08409 1.20760 0.94195 0.96189 1.04834 1.17799 0.92723 0.92897 0.93323 1.19589 1.01441 0.94049 1.38759 0.91836 1.26546 0.94758 1.04270 0.92199 1.69923 1.20760 1.31763 1.24481 0.85305 0.79156 0.77108 0.78958 1.18613 1.19105 1.19384 1.20714 0.97700 0.92854 1.11023 1.20078 0.92444 0.96898 1.09185 1.17181 0.90608 0.85579 1.04365 1.44060 1.06822 1.01155 1.85361 1.20813 0.95391 0.83535 0.95029 0.91688 1.22606 0.98678 1.02026 0.97279 1.22489 0.90870 0.91139 0.96433 1.87885 1.71282 1.44053 1.28127 1.22730 0.95199 1.01546 0.81770 1.21973 0.97652 0.98652 0.96001 0.88508 1.21664 1.01635 1.01561 0.94763 0.92331 0.92886 0.91430 0.88359 0.90865 0.89269 0.86999 0.77220 0.91943 0.89789 0.88092 0.93925 0.86897 0.93543 0.93272 0.90601 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.04 9.55 71.24 0.68 -2.36 16 2 C -0.15 -6.77 5.86 -19.99 -0.12 -6.89 16 3 C -0.14 -7.45 8.27 22.47 0.19 -7.27 16 4 C 0.04 1.98 5.57 -21.27 -0.12 1.86 16 5 C -0.51 -28.87 9.03 23.38 0.21 -28.65 16 6 H 0.06 3.55 7.91 -2.91 -0.02 3.52 16 7 C 0.03 1.81 5.13 85.22 0.44 2.25 16 8 N -0.84 -46.09 10.96 21.82 0.24 -45.85 16 9 Si 0.97 40.58 29.60 68.60 2.03 42.61 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 13 C -0.20 -10.25 9.74 22.48 0.22 -10.03 16 14 C -0.16 -7.13 8.80 22.15 0.19 -6.94 16 15 C 0.12 4.98 6.64 38.67 0.26 5.24 16 16 N -0.74 -22.64 3.72 -317.96 -1.18 -23.82 16 17 C 0.16 4.10 1.97 45.11 0.09 4.18 16 18 H 0.07 1.86 6.44 -2.39 -0.02 1.85 16 19 C -0.17 -4.07 5.75 30.69 0.18 -3.89 16 20 C 0.07 1.56 6.68 72.01 0.48 2.05 16 21 O -0.39 -9.16 10.77 -148.98 -1.60 -10.76 16 22 C 0.06 1.24 5.95 72.01 0.43 1.67 16 23 C -0.12 -2.48 2.70 -10.70 -0.03 -2.50 16 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 25 C -0.14 -2.72 9.01 71.98 0.65 -2.07 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 27 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 28 H 0.07 1.99 6.54 -2.38 -0.02 1.98 16 29 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 30 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 31 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.11 4.26 6.17 -2.91 -0.02 4.25 16 33 H 0.39 10.99 4.63 -92.71 -0.43 10.56 16 34 H 0.06 1.77 7.83 -2.39 -0.02 1.75 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.04 1.09 7.75 -2.39 -0.02 1.07 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 0.92 6.71 -2.39 -0.02 0.90 16 40 H 0.05 1.09 7.26 -2.39 -0.02 1.07 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -61.77 325.86 3.81 -57.96 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.58 Total: 33.24 kcal Atomic # 6 Polarization: -57.11 SS G_CDS: 3.74 Total: -53.37 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.94 Total: -69.68 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.60 Total: -10.76 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.77 3.81 -57.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.192 kcal (2) G-P(sol) polarization free energy of solvation -61.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds