Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36348 * 119.92076 * 2 1 4 4 C 1.40874 * 119.84026 * 180.02562 * 3 2 1 5 5 C 1.41132 * 120.15778 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99898 * 206.77887 * 5 4 3 7 7 C 1.39867 * 120.00063 * 26.77941 * 5 4 3 8 8 N 1.30903 * 119.99614 * 198.02977 * 7 5 4 9 9 Si 1.86793 * 120.00103 * 18.02521 * 7 5 4 10 10 H 1.48500 * 109.47454 * 264.83257 * 9 7 5 11 11 H 1.48502 * 109.47169 * 24.83380 * 9 7 5 12 12 H 1.48495 * 109.47393 * 144.83192 * 9 7 5 13 13 C 1.40904 * 119.68518 * 0.26058 * 4 3 2 14 14 C 1.36323 * 119.83389 * 359.47613 * 13 4 3 15 15 C 1.39545 * 119.91727 * 180.02562 * 2 1 3 16 16 N 1.38855 * 119.84254 * 359.95246 * 15 2 1 17 17 C 1.46499 * 120.00265 * 179.97438 * 16 15 2 18 18 H 1.09011 * 109.54068 * 325.00326 * 17 16 15 19 19 C 1.53175 * 109.54305 * 85.17767 * 17 16 15 20 20 C 1.53107 * 109.15765 * 176.76267 * 19 17 16 21 21 O 1.42901 * 109.48554 * 302.52392 * 20 19 17 22 22 C 1.42910 * 114.09822 * 61.11426 * 21 20 19 23 23 C 1.53094 * 109.41262 * 298.84398 * 22 21 20 24 24 H 1.09002 * 109.51787 * 297.69754 * 23 22 21 25 25 C 1.52995 * 109.52308 * 177.51650 * 23 22 21 26 26 H 1.08996 * 109.47328 * 89.99768 * 1 2 3 27 27 H 1.08999 * 109.47244 * 209.99951 * 1 2 3 28 28 H 1.09005 * 109.46760 * 329.99751 * 1 2 3 29 29 H 1.08006 * 120.08339 * 0.02562 * 3 2 1 30 30 H 0.97004 * 119.99973 * 179.97438 * 8 7 5 31 31 H 1.07992 * 120.08361 * 179.72906 * 13 4 3 32 32 H 1.08000 * 119.91892 * 180.27358 * 14 13 4 33 33 H 0.97001 * 119.99884 * 0.02562 * 16 15 2 34 34 H 1.09003 * 109.52110 * 296.75741 * 19 17 16 35 35 H 1.08999 * 109.52224 * 56.94577 * 19 17 16 36 36 H 1.08995 * 109.47967 * 182.49838 * 20 19 17 37 37 H 1.08994 * 109.41896 * 62.51324 * 20 19 17 38 38 H 1.08990 * 109.48133 * 178.85985 * 22 21 20 39 39 H 1.08999 * 109.48985 * 58.82682 * 22 21 20 40 40 H 1.09004 * 109.46942 * 300.30988 * 25 23 22 41 41 H 1.09004 * 109.47373 * 60.30614 * 25 23 22 42 42 H 1.09000 * 109.47555 * 180.31271 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1817 0.0000 4 6 3.5959 1.1798 -0.0005 5 6 4.3066 2.3991 -0.0011 6 1 5.2998 2.4450 -0.4229 7 6 3.7248 3.5479 0.5446 8 7 4.2016 4.7292 0.2434 9 14 2.2673 3.3966 1.7031 10 1 1.0061 3.5568 0.9356 11 1 2.2863 2.0604 2.3507 12 1 2.3506 4.4523 2.7441 13 6 4.2920 -0.0453 -0.0067 14 6 3.5988 -1.2192 -0.0012 15 6 2.2030 -1.2095 -0.0005 16 7 1.5037 -2.4091 -0.0001 17 6 2.2308 -3.6809 -0.0012 18 1 3.1417 -3.5796 -0.5914 19 6 2.5921 -4.0659 1.4367 20 6 3.2795 -5.4339 1.4329 21 8 2.4164 -6.3995 0.8291 22 6 2.0846 -6.1155 -0.5316 23 6 1.3472 -4.7759 -0.6066 24 1 0.4142 -4.8419 -0.0470 25 6 1.0454 -4.4395 -2.0683 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6472 2.1171 0.0004 30 1 3.7979 5.5261 0.6216 31 1 5.3718 -0.0543 -0.0115 32 1 4.1310 -2.1590 -0.0014 33 1 0.5337 -2.4050 0.0002 34 1 3.2666 -3.3189 1.8552 35 1 1.6850 -4.1171 2.0389 36 1 3.4991 -5.7332 2.4578 37 1 4.2081 -5.3713 0.8657 38 1 1.4434 -6.9057 -0.9220 39 1 2.9973 -6.0616 -1.1249 40 1 1.9793 -4.3767 -2.6270 41 1 0.4166 -5.2192 -2.4983 42 1 0.5254 -3.4830 -2.1212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170826480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -37.055290 kcal Electronic energy + Delta-G solvation = -21703.270496 eV Core-core repulsion = 18647.189889 eV Total energy + Delta-G solvation = -3056.080607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86129 -38.30010 -35.75126 -33.78797 -32.67838 -32.03919 -31.00876 -29.00603 -26.83506 -26.04616 -25.00221 -23.53216 -22.28384 -21.33134 -20.08431 -19.45351 -17.17721 -16.57689 -16.36352 -16.13123 -15.28860 -14.96466 -14.67069 -14.40067 -13.77118 -13.59925 -13.22786 -13.09998 -12.83798 -12.61344 -12.31548 -12.18044 -12.15477 -11.96796 -11.63887 -11.53226 -11.34835 -11.19148 -10.98207 -10.66436 -10.53678 -10.31710 -10.15236 -9.90846 -9.63676 -9.47658 -9.17937 -8.70486 -7.60976 -6.79168 -6.59428 -4.16964 2.65465 2.80770 3.17483 3.28427 3.39916 3.75356 4.08080 4.08639 4.57524 4.59623 4.75753 4.83502 5.08904 5.15208 5.33105 5.38990 5.47182 5.50192 5.57451 5.59209 5.74951 5.77149 5.84341 5.87275 5.97501 6.05273 6.10326 6.16078 6.19706 6.33758 6.36929 6.53942 6.63569 6.97096 7.07755 7.11791 7.34268 7.42899 7.60175 7.94042 8.05817 8.31431 8.47368 8.56690 8.84091 8.97548 10.25006 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.004585 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.336418 B = 6105.366046 C = 6359.732072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.113 4.113 3 C -0.200 4.200 4 C 0.062 3.938 5 C -0.451 4.451 6 H 0.086 0.914 7 C 0.082 3.918 8 N -0.822 5.822 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.245 1.245 12 H -0.296 1.296 13 C -0.175 4.175 14 C -0.145 4.145 15 C 0.096 3.904 16 N -0.751 5.751 17 C 0.168 3.832 18 H 0.073 0.927 19 C -0.173 4.173 20 C 0.062 3.938 21 O -0.386 6.386 22 C 0.069 3.931 23 C -0.133 4.133 24 H 0.078 0.922 25 C -0.142 4.142 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.281 0.719 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.386 0.614 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -16.709 -0.223 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.219 4.219 4 C 0.058 3.942 5 C -0.481 4.481 6 H 0.104 0.896 7 C -0.134 4.134 8 N -0.448 5.448 9 Si 0.738 3.262 10 H -0.201 1.201 11 H -0.168 1.168 12 H -0.224 1.224 13 C -0.195 4.195 14 C -0.166 4.166 15 C -0.002 4.002 16 N -0.386 5.386 17 C 0.061 3.939 18 H 0.091 0.909 19 C -0.212 4.212 20 C -0.015 4.015 21 O -0.304 6.304 22 C -0.008 4.008 23 C -0.153 4.153 24 H 0.096 0.904 25 C -0.199 4.199 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.220 0.780 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.866 -16.670 -0.132 17.673 hybrid contribution -0.834 0.530 0.397 1.065 sum -6.700 -16.140 0.265 17.478 Atomic orbital electron populations 1.20550 0.93767 1.00767 1.00658 1.18688 0.93692 0.92196 1.07142 1.20465 0.94433 0.95420 1.11620 1.17612 0.91162 0.93197 0.92181 1.19302 1.03365 0.91034 1.34436 0.89643 1.26073 0.97180 0.94453 0.95711 1.69738 1.39542 0.98851 1.36699 0.86360 0.80653 0.79115 0.80038 1.20101 1.16849 1.22393 1.20575 0.97921 0.91849 1.09109 1.20009 0.91797 0.97111 1.07722 1.17040 0.90724 0.84415 1.07981 1.43962 1.06564 1.01549 1.86508 1.20631 0.95190 0.83838 0.94285 0.90900 1.22780 1.02075 0.97129 0.99261 1.22597 0.92176 0.88315 0.98415 1.87903 1.68169 1.48247 1.26117 1.22611 0.98717 0.96122 0.83346 1.22047 0.99968 0.95493 0.97742 0.90377 1.21699 1.01825 1.01827 0.94568 0.92644 0.93269 0.92798 0.88304 0.90881 0.88359 0.88826 0.77962 0.90155 0.91264 0.88986 0.93174 0.88936 0.93049 0.92528 0.92876 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.55 36.01 0.34 -1.38 16 2 C -0.11 -2.41 5.86 -104.81 -0.61 -3.02 16 3 C -0.20 -4.85 6.69 -39.27 -0.26 -5.11 16 4 C 0.06 1.59 5.19 -106.79 -0.55 1.04 16 5 C -0.45 -12.54 9.57 -37.88 -0.36 -12.90 16 6 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.08 2.23 5.42 -17.34 -0.09 2.13 16 8 N -0.82 -22.74 13.93 55.54 0.77 -21.97 16 9 Si 0.91 21.56 24.42 -169.99 -4.15 17.40 16 10 H -0.27 -6.29 6.67 56.52 0.38 -5.92 16 11 H -0.25 -5.94 6.76 56.52 0.38 -5.55 16 12 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.17 -4.06 9.74 -39.26 -0.38 -4.44 16 14 C -0.14 -2.97 8.79 -39.77 -0.35 -3.32 16 15 C 0.10 1.88 6.63 -83.69 -0.56 1.33 16 16 N -0.75 -11.66 4.52 -51.86 -0.23 -11.89 16 17 C 0.17 2.21 1.63 -67.75 -0.11 2.10 16 18 H 0.07 1.04 6.46 -51.92 -0.34 0.70 16 19 C -0.17 -2.20 5.65 -26.59 -0.15 -2.35 16 20 C 0.06 0.69 6.84 37.21 0.25 0.94 16 21 O -0.39 -4.60 10.77 -35.23 -0.38 -4.98 16 22 C 0.07 0.70 6.13 37.21 0.23 0.92 16 23 C -0.13 -1.44 2.48 -90.48 -0.22 -1.66 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.14 -1.45 9.07 37.16 0.34 -1.11 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.73 6.53 -51.93 -0.34 0.39 16 28 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.10 2.44 4.28 -52.48 -0.22 2.22 16 30 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 31 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 32 H 0.09 1.69 6.02 -52.49 -0.32 1.38 16 33 H 0.39 5.54 6.52 -40.82 -0.27 5.27 16 34 H 0.08 1.14 7.67 -51.93 -0.40 0.74 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -28.46 324.33 -8.13 -36.59 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.53 Total: 6.80 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.50 Total: -26.84 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.54 Total: -33.86 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.38 Total: -4.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.46 -8.13 -36.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.467 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds