Wall clock time and date at job start Mon Mar 30 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47202 * 2 1 4 4 C 1.53002 * 112.99926 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46933 * 187.13221 * 4 3 2 6 6 C 1.36932 * 120.00237 * 84.61743 * 5 4 3 7 7 H 1.08000 * 120.00528 * 176.38893 * 6 5 4 8 8 C 1.38813 * 119.99848 * 356.38226 * 6 5 4 9 9 N 1.31623 * 120.00254 * 1.21102 * 8 6 5 10 10 Si 1.86799 * 120.00021 * 181.20049 * 8 6 5 11 11 H 1.48496 * 109.47211 * 90.00373 * 10 8 6 12 12 H 1.48503 * 109.47449 * 210.00582 * 10 8 6 13 13 H 1.48500 * 109.47226 * 330.00376 * 10 8 6 14 14 C 1.46506 * 119.99992 * 264.61284 * 5 4 3 15 15 C 1.50696 * 109.46990 * 264.10422 * 14 5 4 16 16 C 1.38237 * 120.00310 * 274.24071 * 15 14 5 17 17 C 1.38231 * 120.00134 * 179.76618 * 16 15 14 18 18 C 1.38233 * 119.99957 * 0.51197 * 17 16 15 19 19 C 1.38239 * 120.00217 * 359.74402 * 18 17 16 20 20 C 1.38234 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.54038 * 113.81407 * 311.82866 * 3 2 1 22 22 O 1.44442 * 85.42585 * 91.80899 * 21 3 2 23 23 C 1.44182 * 93.37853 * 24.08522 * 22 21 3 24 24 H 1.08995 * 109.47566 * 59.99647 * 1 2 3 25 25 H 1.09007 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46749 * 299.99432 * 1 2 3 27 27 H 1.09004 * 109.46856 * 240.00058 * 2 1 3 28 28 H 1.08995 * 109.47566 * 120.00352 * 2 1 3 29 29 H 1.09002 * 109.47043 * 67.12943 * 4 3 2 30 30 H 1.08998 * 109.46772 * 307.13068 * 4 3 2 31 31 H 0.96999 * 120.00112 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46851 * 24.10031 * 14 5 4 33 33 H 1.08994 * 109.47130 * 144.10154 * 14 5 4 34 34 H 1.07996 * 119.99240 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.99930 * 180.23365 * 17 16 15 36 36 H 1.08006 * 120.00185 * 179.71932 * 18 17 16 37 37 H 1.08001 * 119.99887 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.00480 * 179.97438 * 20 19 18 39 39 H 1.09005 * 113.85793 * 205.91593 * 21 3 2 40 40 H 1.08997 * 113.86579 * 337.61997 * 21 3 2 41 41 H 1.09002 * 113.86325 * 221.76691 * 23 22 21 42 42 H 1.09007 * 113.86349 * 90.06267 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5366 -0.0006 5 7 3.9702 2.9345 0.1709 6 6 4.0612 3.4717 1.4272 7 1 4.4143 4.4840 1.5574 8 6 3.6995 2.7151 2.5334 9 7 3.2917 1.4735 2.3767 10 14 3.7917 3.4590 4.2443 11 1 2.4960 4.1055 4.5735 12 1 4.0769 2.3896 5.2344 13 1 4.8755 4.4733 4.2854 14 6 4.2761 3.7579 -1.0017 15 6 5.7635 3.7543 -1.2437 16 6 6.5738 4.6577 -0.5816 17 6 7.9387 4.6512 -0.8000 18 6 8.4922 3.7483 -1.6885 19 6 7.6814 2.8484 -2.3546 20 6 6.3170 2.8517 -2.1327 21 6 1.3613 2.3421 -1.0501 22 8 0.4264 2.6675 0.0019 23 6 1.3614 2.3421 1.0501 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9539 1.1604 -0.9477 30 1 3.9682 0.9397 0.8184 31 1 3.0393 0.9447 3.1497 32 1 3.7650 3.3513 -1.8744 33 1 3.9390 4.7794 -0.8263 34 1 6.1408 5.3657 0.1094 35 1 8.5721 5.3545 -0.2799 36 1 9.5581 3.7462 -1.8626 37 1 8.1138 2.1433 -3.0491 38 1 5.6834 2.1490 -2.6533 39 1 1.9742 3.1843 -1.3714 40 1 0.9185 1.7932 -1.8811 41 1 0.9186 1.7931 1.8812 42 1 1.9743 3.1843 1.3714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202962630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:28 Heat of formation + Delta-G solvation = 56.533415 kcal Electronic energy + Delta-G solvation = -22630.915587 eV Core-core repulsion = 19578.893291 eV Total energy + Delta-G solvation = -3052.022296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82816 -38.64036 -35.58684 -32.61358 -32.19875 -30.39455 -30.12729 -28.17481 -25.80084 -25.07808 -24.65786 -22.72409 -22.04694 -21.48418 -20.19384 -17.57645 -16.80367 -16.22917 -15.38529 -15.22539 -14.66158 -14.52483 -14.40763 -14.15821 -13.56215 -13.53103 -13.11155 -12.92539 -12.54375 -12.15667 -12.07077 -11.60253 -11.25458 -11.18010 -11.05439 -10.92800 -10.75609 -10.70294 -10.46551 -10.43147 -10.13039 -9.87953 -9.79793 -9.12853 -8.93475 -8.72344 -8.41439 -8.19276 -8.00386 -6.95603 -5.64037 -3.22238 1.90052 1.91760 3.33215 3.40064 3.41272 4.25999 4.45507 5.01257 5.29665 5.32745 5.37605 5.45597 5.52551 5.59782 5.69549 5.90196 5.95119 6.02655 6.06695 6.11092 6.18168 6.22658 6.36018 6.47694 6.56511 6.57564 6.60424 6.72203 6.79754 6.86554 6.94552 6.96990 7.05209 7.17656 7.28214 7.28636 7.40936 7.49655 7.54246 7.64799 7.86456 7.92503 8.42350 9.19507 9.75749 10.17372 11.17157 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.007547 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.260544 B = 3709.416375 C = 4848.827394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.099 4.099 4 C 0.158 3.842 5 N -0.591 5.591 6 C -0.227 4.227 7 H 0.075 0.925 8 C -0.009 4.009 9 N -0.905 5.905 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.178 3.822 15 C -0.078 4.078 16 C -0.101 4.101 17 C -0.126 4.126 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.115 4.115 21 C 0.027 3.973 22 O -0.420 6.420 23 C 0.080 3.920 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.000 1.000 30 H 0.135 0.865 31 H 0.251 0.749 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 0.634 -6.884 7.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.102 4.102 4 C 0.034 3.966 5 N -0.311 5.311 6 C -0.356 4.356 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.554 5.554 10 Si 0.737 3.263 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.051 3.949 15 C -0.081 4.081 16 C -0.120 4.120 17 C -0.144 4.144 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.134 4.134 21 C -0.050 4.050 22 O -0.340 6.340 23 C 0.005 3.995 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.019 0.981 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.833 0.620 -6.700 7.301 hybrid contribution 0.307 0.166 0.950 1.012 sum 3.140 0.786 -5.751 6.599 Atomic orbital electron populations 1.21748 0.96879 0.99010 1.02138 1.21074 0.94537 0.96149 1.00920 1.23761 0.99122 0.93618 0.93656 1.21545 0.90807 0.85311 0.98983 1.44167 1.77252 1.08772 1.00861 1.19343 1.35704 0.97542 0.83038 0.90686 1.24744 1.01357 0.96537 0.97770 1.69950 1.50353 1.07541 1.27595 0.86189 0.77827 0.78000 0.84326 1.21459 1.21642 1.20805 1.19900 0.88265 0.95963 0.90735 1.21113 0.99560 0.93735 0.93696 1.21017 0.93165 0.99082 0.98736 1.21060 0.95328 0.99257 0.98746 1.20936 0.98938 0.97255 0.98635 1.21010 0.94049 0.99095 1.00361 1.20996 0.94694 0.98759 0.98966 1.24067 0.90902 0.97895 0.92109 1.89490 1.35205 1.90717 1.18621 1.24340 0.86905 0.98771 0.89461 0.93324 0.94797 0.92644 0.93799 0.91142 0.98136 0.84863 0.93675 0.92914 0.93115 0.86536 0.87053 0.87204 0.87103 0.86928 0.91262 0.92449 0.92301 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.63 37.16 0.32 -2.17 16 2 C -0.09 -1.68 5.65 -26.73 -0.15 -1.83 16 3 C -0.10 -2.07 0.90 -153.43 -0.14 -2.20 16 4 C 0.16 3.49 4.83 -4.04 -0.02 3.47 16 5 N -0.59 -13.05 1.96 -174.61 -0.34 -13.39 16 6 C -0.23 -5.48 8.16 -15.06 -0.12 -5.60 16 7 H 0.08 1.81 7.83 -52.49 -0.41 1.39 16 8 C -0.01 -0.23 3.77 -17.43 -0.07 -0.30 16 9 N -0.90 -22.35 6.83 55.49 0.38 -21.97 16 10 Si 0.91 20.48 29.55 -169.99 -5.02 15.45 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.18 3.40 4.63 -5.19 -0.02 3.38 16 15 C -0.08 -1.41 5.42 -104.62 -0.57 -1.98 16 16 C -0.10 -1.78 9.72 -39.58 -0.38 -2.16 16 17 C -0.13 -1.97 10.05 -39.59 -0.40 -2.36 16 18 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 19 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 20 C -0.12 -1.93 9.68 -39.58 -0.38 -2.31 16 21 C 0.03 0.55 7.61 37.64 0.29 0.84 16 22 O -0.42 -9.50 10.87 -35.23 -0.38 -9.88 16 23 C 0.08 1.85 5.17 37.64 0.19 2.05 16 24 H 0.05 0.86 6.53 -51.93 -0.34 0.52 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.06 6.53 -51.93 -0.34 0.72 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 30 H 0.13 3.35 5.34 -53.73 -0.29 3.06 16 31 H 0.25 6.24 8.31 -40.82 -0.34 5.91 16 32 H 0.05 0.94 6.64 -51.93 -0.34 0.60 16 33 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.07 1.39 5.18 -51.93 -0.27 1.12 16 40 H 0.06 1.05 7.33 -51.93 -0.38 0.67 16 41 H 0.06 1.41 7.07 -51.93 -0.37 1.05 16 42 H 0.12 2.97 4.13 -51.93 -0.21 2.75 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -25.13 320.52 -9.09 -34.22 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.31 Total: 6.69 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.25 Total: -15.95 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.04 Total: -35.36 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.38 Total: -9.88 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -25.13 -9.09 -34.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202962630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.751 kcal (2) G-P(sol) polarization free energy of solvation -25.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds