Wall clock time and date at job start Mon Mar 30 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47202 * 2 1 4 4 C 1.53002 * 112.99926 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46933 * 187.13221 * 4 3 2 6 6 C 1.36932 * 120.00237 * 84.61743 * 5 4 3 7 7 H 1.08000 * 120.00528 * 176.38893 * 6 5 4 8 8 C 1.38813 * 119.99848 * 356.38226 * 6 5 4 9 9 N 1.31623 * 120.00254 * 1.21102 * 8 6 5 10 10 Si 1.86799 * 120.00021 * 181.20049 * 8 6 5 11 11 H 1.48496 * 109.47211 * 90.00373 * 10 8 6 12 12 H 1.48503 * 109.47449 * 210.00582 * 10 8 6 13 13 H 1.48500 * 109.47226 * 330.00376 * 10 8 6 14 14 C 1.46506 * 119.99992 * 264.61284 * 5 4 3 15 15 C 1.50696 * 109.46990 * 264.10422 * 14 5 4 16 16 C 1.38237 * 120.00310 * 274.24071 * 15 14 5 17 17 C 1.38231 * 120.00134 * 179.76618 * 16 15 14 18 18 C 1.38233 * 119.99957 * 0.51197 * 17 16 15 19 19 C 1.38239 * 120.00217 * 359.74402 * 18 17 16 20 20 C 1.38234 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.54038 * 113.81407 * 311.82866 * 3 2 1 22 22 O 1.44442 * 85.42585 * 91.80899 * 21 3 2 23 23 C 1.44182 * 93.37853 * 24.08522 * 22 21 3 24 24 H 1.08995 * 109.47566 * 59.99647 * 1 2 3 25 25 H 1.09007 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46749 * 299.99432 * 1 2 3 27 27 H 1.09004 * 109.46856 * 240.00058 * 2 1 3 28 28 H 1.08995 * 109.47566 * 120.00352 * 2 1 3 29 29 H 1.09002 * 109.47043 * 67.12943 * 4 3 2 30 30 H 1.08998 * 109.46772 * 307.13068 * 4 3 2 31 31 H 0.96999 * 120.00112 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46851 * 24.10031 * 14 5 4 33 33 H 1.08994 * 109.47130 * 144.10154 * 14 5 4 34 34 H 1.07996 * 119.99240 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.99930 * 180.23365 * 17 16 15 36 36 H 1.08006 * 120.00185 * 179.71932 * 18 17 16 37 37 H 1.08001 * 119.99887 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.00480 * 179.97438 * 20 19 18 39 39 H 1.09005 * 113.85793 * 205.91593 * 21 3 2 40 40 H 1.08997 * 113.86579 * 337.61997 * 21 3 2 41 41 H 1.09002 * 113.86325 * 221.76691 * 23 22 21 42 42 H 1.09007 * 113.86349 * 90.06267 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5366 -0.0006 5 7 3.9702 2.9345 0.1709 6 6 4.0612 3.4717 1.4272 7 1 4.4143 4.4840 1.5574 8 6 3.6995 2.7151 2.5334 9 7 3.2917 1.4735 2.3767 10 14 3.7917 3.4590 4.2443 11 1 2.4960 4.1055 4.5735 12 1 4.0769 2.3896 5.2344 13 1 4.8755 4.4733 4.2854 14 6 4.2761 3.7579 -1.0017 15 6 5.7635 3.7543 -1.2437 16 6 6.5738 4.6577 -0.5816 17 6 7.9387 4.6512 -0.8000 18 6 8.4922 3.7483 -1.6885 19 6 7.6814 2.8484 -2.3546 20 6 6.3170 2.8517 -2.1327 21 6 1.3613 2.3421 -1.0501 22 8 0.4264 2.6675 0.0019 23 6 1.3614 2.3421 1.0501 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9539 1.1604 -0.9477 30 1 3.9682 0.9397 0.8184 31 1 3.0393 0.9447 3.1497 32 1 3.7650 3.3513 -1.8744 33 1 3.9390 4.7794 -0.8263 34 1 6.1408 5.3657 0.1094 35 1 8.5721 5.3545 -0.2799 36 1 9.5581 3.7462 -1.8626 37 1 8.1138 2.1433 -3.0491 38 1 5.6834 2.1490 -2.6533 39 1 1.9742 3.1843 -1.3714 40 1 0.9185 1.7932 -1.8811 41 1 0.9186 1.7931 1.8812 42 1 1.9743 3.1843 1.3714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202962630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:27 Heat of formation + Delta-G solvation = 46.038198 kcal Electronic energy + Delta-G solvation = -22631.370693 eV Core-core repulsion = 19578.893291 eV Total energy + Delta-G solvation = -3052.477403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53651 -39.92578 -37.27461 -34.18106 -33.85326 -31.67485 -31.61220 -29.78584 -27.43349 -26.79421 -26.38164 -24.29439 -23.34423 -22.96910 -21.65375 -19.26283 -18.55106 -17.53215 -17.14143 -16.84993 -16.16881 -16.13622 -15.89290 -15.67227 -15.31206 -15.10198 -14.77259 -14.13732 -13.93461 -13.64283 -13.52388 -13.12207 -12.96138 -12.81223 -12.69546 -12.51248 -12.40238 -12.35764 -11.95180 -11.85596 -11.73584 -11.62360 -11.44321 -10.84140 -10.66940 -10.48489 -9.80377 -9.65464 -9.49047 -8.71409 -7.50915 -5.07895 0.64654 0.66748 1.48538 1.53272 1.56299 2.54431 3.04464 3.25995 3.49242 3.82625 3.94712 4.11141 4.20886 4.30530 4.38002 4.41413 4.50760 4.58029 4.59083 4.65777 4.77293 4.86503 4.92145 4.94891 5.02533 5.10148 5.18607 5.21057 5.30649 5.32382 5.42381 5.52476 5.63313 5.67349 5.73509 5.74209 5.76469 5.81359 5.97366 6.03244 6.08698 6.30849 6.58289 7.32716 7.98414 8.35140 9.26871 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.007547 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.260544 B = 3709.416375 C = 4848.827394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.093 4.093 4 C 0.165 3.835 5 N -0.599 5.599 6 C -0.226 4.226 7 H 0.069 0.931 8 C -0.043 4.043 9 N -0.910 5.910 10 Si 0.946 3.054 11 H -0.295 1.295 12 H -0.298 1.298 13 H -0.281 1.281 14 C 0.181 3.819 15 C -0.099 4.099 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.127 4.127 21 C 0.033 3.967 22 O -0.432 6.432 23 C 0.083 3.917 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.011 0.989 30 H 0.106 0.894 31 H 0.242 0.758 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 0.102 -8.674 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C -0.095 4.095 4 C 0.040 3.960 5 N -0.319 5.319 6 C -0.356 4.356 7 H 0.087 0.913 8 C -0.236 4.236 9 N -0.560 5.560 10 Si 0.778 3.222 11 H -0.223 1.223 12 H -0.225 1.225 13 H -0.207 1.207 14 C 0.055 3.945 15 C -0.101 4.101 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.043 4.043 22 O -0.352 6.352 23 C 0.008 3.992 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.123 0.877 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.139 0.861 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.920 0.105 -8.516 9.376 hybrid contribution 0.040 0.384 1.440 1.490 sum 3.961 0.488 -7.076 8.124 Atomic orbital electron populations 1.21653 0.95788 1.00361 1.01106 1.21051 0.95405 0.94726 1.01193 1.23691 0.98327 0.94673 0.92840 1.21314 0.91454 0.85006 0.98210 1.44224 1.77634 1.09021 1.01038 1.19409 1.34833 0.97241 0.84135 0.91327 1.25113 1.02134 0.97027 0.99335 1.70122 1.51037 1.07758 1.27123 0.85557 0.77195 0.77110 0.82355 1.22254 1.22494 1.20690 1.19919 0.89468 0.95121 0.89962 1.20994 0.98696 0.95161 0.95292 1.21096 0.94398 0.99415 0.99204 1.21353 0.94680 0.99906 0.98983 1.21358 1.00634 0.96106 0.97362 1.21385 0.93372 0.99371 1.00387 1.21179 0.95894 0.98595 0.98858 1.24159 0.90302 0.97761 0.92120 1.89472 1.35720 1.90857 1.19185 1.24057 0.87003 0.98413 0.89739 0.93065 0.92289 0.94837 0.91661 0.92668 0.97036 0.87711 0.94625 0.91718 0.93812 0.87585 0.84953 0.83996 0.84174 0.86113 0.91324 0.89813 0.93902 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 8.63 71.98 0.62 -3.82 16 2 C -0.09 -3.13 5.65 30.59 0.17 -2.96 16 3 C -0.09 -3.81 0.90 -51.48 -0.05 -3.86 16 4 C 0.17 7.22 4.83 86.38 0.42 7.64 16 5 N -0.60 -26.55 1.96 -706.35 -1.38 -27.93 16 6 C -0.23 -11.11 8.16 84.03 0.69 -10.42 16 7 H 0.07 3.39 7.83 -2.91 -0.02 3.37 16 8 C -0.04 -2.14 3.77 84.86 0.32 -1.82 16 9 N -0.91 -45.96 6.83 21.65 0.15 -45.81 16 10 Si 0.95 43.00 29.55 68.60 2.03 45.03 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.18 6.88 4.63 85.63 0.40 7.28 16 15 C -0.10 -3.51 5.42 -19.86 -0.11 -3.62 16 16 C -0.12 -4.24 9.72 22.27 0.22 -4.02 16 17 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 18 C -0.14 -3.57 10.05 22.27 0.22 -3.35 16 19 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 20 C -0.13 -3.99 9.68 22.27 0.22 -3.78 16 21 C 0.03 1.28 7.61 72.30 0.55 1.83 16 22 O -0.43 -19.32 10.87 -148.98 -1.62 -20.94 16 23 C 0.08 3.90 5.17 72.29 0.37 4.28 16 24 H 0.05 1.68 6.53 -2.39 -0.02 1.67 16 25 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 26 H 0.03 1.26 6.53 -2.39 -0.02 1.24 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.01 0.47 8.03 -2.39 -0.02 0.45 16 30 H 0.11 5.31 5.34 -5.95 -0.03 5.28 16 31 H 0.24 12.38 8.31 -92.71 -0.77 11.61 16 32 H 0.06 2.25 6.64 -2.39 -0.02 2.23 16 33 H 0.04 1.69 8.06 -2.39 -0.02 1.67 16 34 H 0.11 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.07 2.66 5.18 -2.38 -0.01 2.65 16 40 H 0.08 2.80 7.33 -2.39 -0.02 2.78 16 41 H 0.04 2.12 7.07 -2.39 -0.02 2.10 16 42 H 0.09 4.88 4.13 -2.38 -0.01 4.87 16 Total: -1.00 -53.77 320.52 4.64 -49.13 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.98 Total: 23.99 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.49 Total: -23.46 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.23 Total: -73.74 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.62 Total: -20.94 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -53.77 4.64 -49.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202962630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.168 kcal (2) G-P(sol) polarization free energy of solvation -53.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds