Wall clock time and date at job start Mon Mar 30 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00145 * 2 1 4 4 C 1.38761 * 120.05424 * 0.29856 * 3 2 1 5 5 C 1.38116 * 119.94352 * 180.20603 * 4 3 2 6 6 C 1.50702 * 119.97391 * 179.79298 * 5 4 3 7 7 C 1.38293 * 120.05609 * 359.51762 * 5 4 3 8 8 C 1.50696 * 119.94509 * 180.25295 * 7 5 4 9 9 N 1.46899 * 109.47023 * 285.43613 * 8 7 5 10 10 C 1.47483 * 111.00239 * 270.14693 * 9 8 7 11 11 C 1.53507 * 87.93595 * 221.29939 * 10 9 8 12 12 C 1.50695 * 114.34694 * 139.68403 * 11 10 9 13 13 H 1.07998 * 120.00379 * 266.08210 * 12 11 10 14 14 C 1.37880 * 119.99958 * 86.07476 * 12 11 10 15 15 N 1.31520 * 119.99877 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00084 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47114 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47210 * 120.00273 * 16 14 12 19 19 H 1.48503 * 109.46978 * 239.99757 * 16 14 12 20 20 C 1.47486 * 111.00174 * 174.18081 * 9 8 7 21 21 C 1.38243 * 120.11155 * 0.23052 * 7 5 4 22 22 C 1.38166 * 120.05535 * 0.02562 * 21 7 5 23 23 C 1.50699 * 120.03007 * 180.02562 * 22 21 7 24 24 H 1.09001 * 109.47187 * 299.99629 * 1 2 3 25 25 H 1.09000 * 109.47052 * 60.00039 * 1 2 3 26 26 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.02781 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.46811 * 264.08978 * 6 5 4 29 29 H 1.08998 * 109.46738 * 24.08609 * 6 5 4 30 30 H 1.09003 * 109.47029 * 144.08766 * 6 5 4 31 31 H 1.08998 * 109.47029 * 45.43691 * 8 7 5 32 32 H 1.08999 * 109.47065 * 165.43696 * 8 7 5 33 33 H 1.08998 * 113.47374 * 336.07149 * 10 9 8 34 34 H 1.09007 * 113.47035 * 106.52885 * 10 9 8 35 35 H 1.09004 * 114.16960 * 272.37984 * 11 10 9 36 36 H 0.97005 * 120.00020 * 180.02562 * 15 14 12 37 37 H 1.09008 * 113.47514 * 253.47315 * 20 9 8 38 38 H 1.09003 * 113.47323 * 23.87029 * 20 9 8 39 39 H 1.07993 * 119.97277 * 180.02562 * 21 7 5 40 40 H 1.08997 * 109.47456 * 89.99654 * 23 22 21 41 41 H 1.09001 * 109.47172 * 209.99800 * 23 22 21 42 42 H 1.09007 * 109.46687 * 329.99493 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 1.1019 4.8698 0.0040 7 6 3.3019 3.6758 0.0015 8 6 3.9861 5.0185 0.0025 9 7 3.8794 5.6234 -1.3319 10 6 5.0216 5.2361 -2.1807 11 6 5.0622 6.6835 -2.6904 12 6 6.4508 7.2448 -2.8569 13 1 6.9036 7.8117 -2.0569 14 6 7.1433 7.0345 -4.0305 15 7 6.5917 6.3445 -5.0048 16 14 8.8648 7.7297 -4.2366 17 1 9.2537 8.4618 -3.0046 18 1 9.8215 6.6195 -4.4762 19 1 8.8874 8.6608 -5.3932 20 6 4.4159 6.9972 -1.3339 21 6 4.0560 2.5171 0.0005 22 6 3.4312 1.2848 -0.0005 23 6 4.2537 0.0221 -0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2128 2.3203 0.0116 28 1 0.9888 5.2310 -1.0181 29 1 0.1188 4.6655 0.4280 30 1 1.6059 5.6279 0.6036 31 1 3.5088 5.6688 0.7355 32 1 5.0374 4.8904 0.2604 33 1 5.9072 4.9506 -1.6131 34 1 4.7628 4.5110 -2.9524 35 1 4.4157 6.8732 -3.5473 36 1 7.0790 6.1962 -5.8304 37 1 3.6438 7.7648 -1.3878 38 1 5.1391 7.1821 -0.5395 39 1 5.1344 2.5752 0.0006 40 1 4.4517 -0.2830 1.0265 41 1 3.7065 -0.7678 -0.5155 42 1 5.1980 0.2039 -0.5145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203752207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:02 Heat of formation + Delta-G solvation = 10.671733 kcal Electronic energy + Delta-G solvation = -21182.544942 eV Core-core repulsion = 18128.533934 eV Total energy + Delta-G solvation = -3054.011008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30359 -38.95837 -37.45822 -33.82789 -32.72716 -31.35399 -29.08254 -28.47332 -27.49367 -25.54967 -24.72392 -24.31231 -22.54819 -21.67997 -19.87000 -18.56755 -17.39145 -16.61763 -16.42331 -15.79530 -15.06594 -14.84227 -14.39611 -14.29762 -14.03665 -13.77293 -13.43608 -13.17694 -12.96466 -12.69260 -12.32462 -12.05633 -11.95709 -11.79153 -11.75440 -11.62587 -11.36311 -11.03223 -10.86143 -10.74356 -10.67804 -10.46611 -10.18195 -9.70818 -9.21899 -8.92090 -8.48911 -8.43144 -7.96945 -7.73355 -6.04301 -4.08829 1.51605 1.61639 3.28174 3.29654 3.36598 3.39944 3.86352 4.41117 4.82616 4.89650 4.97451 5.03650 5.05755 5.19018 5.27189 5.30903 5.35222 5.39039 5.62774 5.73626 5.75058 5.77978 5.82851 5.88341 5.97848 6.01101 6.16757 6.20224 6.35855 6.47004 6.47912 6.54420 6.62029 6.69691 6.77160 6.93382 6.98347 7.19543 7.24150 7.48509 7.74233 7.92858 8.11267 8.39025 8.94707 9.56182 11.05220 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.003981 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.206627 B = 7031.906096 C = 7584.140259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.030 4.030 6 C -0.107 4.107 7 C -0.095 4.095 8 C 0.061 3.939 9 N -0.475 5.475 10 C 0.008 3.992 11 C 0.041 3.959 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.006 4.006 21 C -0.073 4.073 22 C -0.125 4.125 23 C -0.101 4.101 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 -9.986 11.359 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.074 3.926 4 C -0.227 4.227 5 C -0.031 4.031 6 C -0.164 4.164 7 C -0.095 4.095 8 C -0.068 4.068 9 N -0.198 5.198 10 C -0.121 4.121 11 C 0.022 3.978 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.141 0.859 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.177 -10.393 10.999 18.812 hybrid contribution 1.499 0.457 0.154 1.575 sum -9.678 -9.936 11.153 17.798 Atomic orbital electron populations 1.22990 0.78967 1.03423 1.01253 1.86023 1.20853 1.27177 1.89116 1.18730 0.91707 0.83876 0.98309 1.21002 0.99400 0.91823 1.10497 1.19478 0.93316 0.94345 0.95958 1.20748 0.97666 0.94638 1.03324 1.19581 0.92910 0.94846 1.02204 1.21530 0.98056 0.92603 0.94563 1.68914 1.38815 1.04519 1.07511 1.24055 0.89849 1.02267 0.95894 1.20086 0.95846 0.90482 0.91356 1.21076 0.99537 1.34244 1.00560 0.92418 1.25020 0.98016 0.94843 0.95732 1.69986 1.37392 1.39466 1.05434 0.86576 0.84628 0.78890 0.78148 1.19734 1.20998 1.20928 1.24011 0.97235 0.90983 1.01286 1.20798 0.99632 0.90605 0.98093 1.19131 0.90496 0.95944 1.07024 1.20555 0.98849 0.94587 1.01763 0.92939 0.92776 0.88627 0.85905 0.90034 0.92839 0.91384 0.91037 0.93714 0.93000 0.92008 0.91896 0.92942 0.92063 0.92900 0.85670 0.91879 0.91516 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.10 9.54 -19.41 -0.19 -4.29 16 3 C 0.12 1.72 6.66 -39.21 -0.26 1.46 16 4 C -0.21 -2.91 8.67 -39.43 -0.34 -3.25 16 5 C -0.03 -0.46 5.88 -104.65 -0.62 -1.07 16 6 C -0.11 -1.43 9.38 36.01 0.34 -1.09 16 7 C -0.09 -1.55 5.43 -104.60 -0.57 -2.12 16 8 C 0.06 1.03 4.21 -4.98 -0.02 1.01 16 9 N -0.48 -9.50 6.18 -246.10 -1.52 -11.02 16 10 C 0.01 0.19 7.25 -7.55 -0.05 0.14 16 11 C 0.04 1.04 3.76 -91.25 -0.34 0.69 16 12 C -0.52 -14.02 8.83 -34.44 -0.30 -14.33 16 13 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.65 13.26 55.43 0.74 -24.92 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.01 -0.13 7.27 -7.55 -0.05 -0.19 16 21 C -0.07 -1.14 9.32 -39.61 -0.37 -1.51 16 22 C -0.13 -1.86 5.89 -104.47 -0.62 -2.48 16 23 C -0.10 -1.25 9.79 36.01 0.35 -0.90 16 24 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 25 H 0.05 0.45 7.68 -51.93 -0.40 0.06 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 30 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 31 H 0.07 1.11 6.72 -51.93 -0.35 0.76 16 32 H 0.04 0.77 7.18 -51.93 -0.37 0.40 16 33 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 34 H 0.06 1.52 8.14 -51.92 -0.42 1.10 16 35 H 0.06 1.74 8.11 -51.93 -0.42 1.31 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.05 1.07 7.87 -51.93 -0.41 0.67 16 39 H 0.13 1.85 7.99 -52.49 -0.42 1.43 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 42 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -29.58 341.34 -9.52 -39.10 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.71 Total: 0.59 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.96 Total: -20.64 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.79 Total: -35.94 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.29 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.58 -9.52 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203752207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.773 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds